EsuBft1631_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1631_2a-0001
Unique Name	EsuBft1631_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:34271..36547 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	15368.BRADI5G27155.1
ProteomeId	EsuBft1631_2
Protein domains	IPR013103
Protein domains	SSF56672
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	35493\|Streptophyta
Length	2094
Hectar predicted targeting category	other localisation
Evalue	1.86e-68
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37V5Q@33090\|Viridiplantae,3GFFK@35493\|Streptophyta,3M7B5@4447\|Liliopsida,3IKJW@38820\|Poales
Date last modified	2016-06-15
Date creation	2016-06-15
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_2a	EsuBft1631_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 34271..36547 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_2a-0001-exon	EsuBft1631_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 34271..34654 +
EsuBft1631_2a-0001-exon	agat-exon-92250	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 34761..36222 +
EsuBft1631_2a-0001-exon	agat-exon-92251	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 36300..36547 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_2a-0001-cds	EsuBft1631_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 34271..34654 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_2a-0001	EsuBft1631_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 34271..36547 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:34271..36547+
coding sequence from alignment at Scaffold_265:34271..36547+

spliced messenger RNA

>EsuBft1631_2a-0001 ID=EsuBft1631_2a-0001|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2094bp|location=Sequence derived from alignment at Scaffold_265:34271..36547+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGGCGGACGCGGGAATGATCGCAGGAGCCGAAACTCTGGAAGT
CGTGGTCGGGCTCAGGATACCGGCCGCAACCGTCAAAGGACGTTGCAGAT
ACTGCCGTAACAGCACCGAGCACGGGTGGGACGAATGCCCGCTCCGCCGG
AGGCACGAGGCGGAGGACAACAACACAGGACAGGTGCACAACACGCAAGA
CTCCACCACGCAGGCTTGGTACACGCGGGTGGAGGCGGCGGACGATGAGC
TTGAAGATTTCGCCATCGTCTTCGATAACGACAAGCAGGAGCTGAACGCC
CCTGCTGTGGCGTTGCCGAGGGAGCGCGCTGCTGCTGGTGACCAGGAGCA
AGACGCGGCTGCACCGGCGCTGCCGGACGGAGTCGAATTCGCGGAGCCTG
CGGCAGCGACGGACCTCGATATCACTACCCCTCCTGACTCTCCGGCCGAG
AAAGTGACAGAGCTGGTAAGGTGCACTAGCGTGTTTCAGGTGGAACAAGC
TCTTCTGACAGGGGGTGTACTCGGAAACGTCGGGACGGGCAACCCTGGAG
AAATAGGTTCCAGGTCTCCCGACCCGACCAACCAAGACGACGCAACACGT
GGACCAGATGCTGACCACTGGAGGGAGAGTATGCGCGAAGAAAATCGTTC
GCTCACGGAACTCGGCGTATACGATTGGGTGAAACGGCCGGCGGACGGTG
ATATACTTCCGTCAAGATACCTGTACAAACGGAAGTATGCAGCACACGGA
GAACTAGCTATACTGAAGAGTCGTATCGTGGTCCAAGGCTTCCATCAAGA
AGACACGGGGGAAGACAAGGCATCATCAGTGGCGACATTGGAGGCGGTAC
ATCTAGTAGTCGCCGTCGCTGCTCAGAATGGCCTTGTTCTAAAACAGGCT
GACATCAAGACAGCGTTCCTACATGCCAGGATCCCCGCTAACGCAGACCC
GATTTATGTTCGTCCTCCGAAGGGTTTCGAATGCTCTCCAGAACAAGCAC
GGCAGGTTTGGCGGCTAAAGGCATGGCTCTACGGATTGCGTCTCTCCCCG
AAAGGATGGTGCAGCACCTCCCACGACTTCCTGATTGAGAAAGGGTTCGT
ACAGAGTAAAGCAGACCCCTGTCACTACATTCTCGAAGCGGAAGGAGTTA
TCCTTTTCGTGTACGTTGACGACATTCTGCTGTCGGGGAAGGACGAGGAT
AAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAGCACGGTGTT
CTTGGAGGATGCTCAGCACCTGCTTGGTATGAAGCTCGAAAGGAACGTCG
ACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTC
AACCAGTTGGGAATGACCGAATCGCGCCCGGTGAAGACACCGGCGGAACC
TGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATTTCCAGAGGACACCA
AATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGGGCTCA
AGACCGAACATAACACACTCGGTGATGATGCTCGCGAAGAGTATGGCGAA
GCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTATCCAA
AAGGAACGACCTCTATCGGAATCACATACACCGAAGACGCCGACGGCGGA
GATAAAGTCACGGCGTACGTGGACCCTGATTTTGCAGGTGACCAAGACAA
AGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGG
ACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCT
GAAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCTGGA
CTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCTG
AAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCGTAAT
TTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGATAGTGTTTGA
GGACAACACAAGCGCTATAGCGTTTGCTAAGGGCGCCAAACTCACGCCCC
GTACTAAACATATCGACGTCAAGTATCACCACGTCCGGTACTAA

protein sequence of EsuBft1631_2a-0001

>EsuBft1631_2 ID=EsuBft1631_2|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=697bp
MRMADAGMIAGAETLEVVVGLRIPAATVKGRCRYCRNSTEHGWDECPLRR
RHEAEDNNTGQVHNTQDSTTQAWYTRVEAADDELEDFAIVFDNDKQELNA
PAVALPRERAAAGDQEQDAAAPALPDGVEFAEPAAATDLDITTPPDSPAE
KVTELVRCTSVFQVEQALLTGGVLGNVGTGNPGEIGSRSPDPTNQDDATR
GPDADHWRESMREENRSLTELGVYDWVKRPADGDILPSRYLYKRKYAAHG
ELAILKSRIVVQGFHQEDTGEDKASSVATLEAVHLVVAVAAQNGLVLKQA
DIKTAFLHARIPANADPIYVRPPKGFECSPEQARQVWRLKAWLYGLRLSP
KGWCSTSHDFLIEKGFVQSKADPCHYILEAEGVILFVYVDDILLSGKDED
KVMMVVDLLKERFSTVFLEDAQHLLGMKLERNVDAGTIFLSQETYAKTVL
NQLGMTESRPVKTPAEPGPISIEEEKVLFPEDTKYYRSATGSLLYLSRGS
RPNITHSVMMLAKSMAKPGPRAMTKLKRVLRYPKGTTSIGITYTEDADGG
DKVTAYVDPDFAGDQDKGYSTTGAVLYLAGAPVDWISKKQTVLAISTFEA
EAFALSKACNIVIHFLDWISKKQTVLAISTFEAEAFALSKACNIVIHFRN
LLKSLNMKQEQPTIVFEDNTSAIAFAKGAKLTPRTKHIDVKYHHVRY

mRNA from alignment at Scaffold_265:34271..36547+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1631_2a-0001 ID=EsuBft1631_2a-0001|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2277bp|location=Sequence derived from alignment at Scaffold_265:34271..36547+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGCGGACGCGGGAATGATCGCAGGAGCCGAAACTCTGGAAGT
CGTGGTCGGGCTCAGGATACCGGCCGCAACCGTCAAAGGACGTTGCAGAT
ACTGCCGTAACAGCACCGAGCACGGGTGGGACGAATGCCCGCTCCGCCGG
AGGCACGAGGCGGAGGACAACAACACAGGACAGGTGCACAACACGCAAGA
CTCCACCACGCAGGCTTGGTACACGCGGGTGGAGGCGGCGGACGATGAGC
TTGAAGATTTCGCCATCGTCTTCGATAACGACAAGCAGGAGCTGAACGCC
CCTGCTGTGGCGTTGCCGAGGGAGCGCGCTGCTGCTGGTGACCAGGAGCA
AGACGCGGCTGCACCGGCGCTGCCGGACGGAGTCGTAATATATGATCCGC
AAGTATGGGAGTGCGCTGCTGGAGATGAGCAGACGCACGATGTGGACCGA
GTCGGCGCTGCCGAATGTGCGCGCCACTGACGACCTGCAGGAATTCGCGG
AGCCTGCGGCAGCGACGGACCTCGATATCACTACCCCTCCTGACTCTCCG
GCCGAGAAAGTGACAGAGCTGGTAAGGTGCACTAGCGTGTTTCAGGTGGA
ACAAGCTCTTCTGACAGGGGGTGTACTCGGAAACGTCGGGACGGGCAACC
CTGGAGAAATAGGTTCCAGGTCTCCCGACCCGACCAACCAAGACGACGCA
ACACGTGGACCAGATGCTGACCACTGGAGGGAGAGTATGCGCGAAGAAAA
TCGTTCGCTCACGGAACTCGGCGTATACGATTGGGTGAAACGGCCGGCGG
ACGGTGATATACTTCCGTCAAGATACCTGTACAAACGGAAGTATGCAGCA
CACGGAGAACTAGCTATACTGAAGAGTCGTATCGTGGTCCAAGGCTTCCA
TCAAGAAGACACGGGGGAAGACAAGGCATCATCAGTGGCGACATTGGAGG
CGGTACATCTAGTAGTCGCCGTCGCTGCTCAGAATGGCCTTGTTCTAAAA
CAGGCTGACATCAAGACAGCGTTCCTACATGCCAGGATCCCCGCTAACGC
AGACCCGATTTATGTTCGTCCTCCGAAGGGTTTCGAATGCTCTCCAGAAC
AAGCACGGCAGGTTTGGCGGCTAAAGGCATGGCTCTACGGATTGCGTCTC
TCCCCGAAAGGATGGTGCAGCACCTCCCACGACTTCCTGATTGAGAAAGG
GTTCGTACAGAGTAAAGCAGACCCCTGTCACTACATTCTCGAAGCGGAAG
GAGTTATCCTTTTCGTGTACGTTGACGACATTCTGCTGTCGGGGAAGGAC
GAGGATAAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAGCAC
GGTGTTCTTGGAGGATGCTCAGCACCTGCTTGGTATGAAGCTCGAAAGGA
ACGTCGACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACC
GTGCTCAACCAGTTGGGAATGACCGAATCGCGCCCGGTGAAGACACCGGC
GGAACCTGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATTTCCAGAGG
ACACCAAATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGG
GGCTCAAGACCGAACATAACACACTCGGTGATGATGCTCGCGAAGAGTAT
GGCGAAGCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGT
ATCCAAAAGGAACGACCTCTATCGGAATCACATACACCGAAGACGCCGAC
GGCGGAGATAAAGTCACGGCGTACGTGGACCCTGATTTTGCAGGTGACCA
AGACAAAGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCC
CAGTGGACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTT
GAGGCTGAAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTT
TCGTAATTTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGATAG
TGTTTGAGGACAACACAANGGTGCCCCAGTGGACTGGATATCCAAGAAGC
AAACGGTGCTGGCCATCTCCACGTTTGAGGCTGAAGCCTTTGCCCTGTCC
AAGGCGTGCAATATTGTCATCCACTTTCGTAATTTGCTGAAGTCGCTGAA
CATGAAGCAGGAGCAGCCCACGATAGTGTTTGAGGACAACACAAGCGCTA
TAGCGTTTGCTAAGGGCGCCAAACTCACGCCCCGTACTAAACATATCGAC
GTCAAGTATCACCACGTCCGGTACTAA

Coding sequence (CDS) from alignment at Scaffold_265:34271..36547+

>EsuBft1631_2a-0001 ID=EsuBft1631_2a-0001|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2094bp|location=Sequence derived from alignment at Scaffold_265:34271..36547+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGCGGACGCGGGAATGATCGCAGGAGCCGAAACTCTGGAAGT
CGTGGTCGGGCTCAGGATACCGGCCGCAACCGTCAAAGGACGTTGCAGAT
ACTGCCGTAACAGCACCGAGCACGGGTGGGACGAATGCCCGCTCCGCCGG
AGGCACGAGGCGGAGGACAACAACACAGGACAGGTGCACAACACGCAAGA
CTCCACCACGCAGGCTTGGTACACGCGGGTGGAGGCGGCGGACGATGAGC
TTGAAGATTTCGCCATCGTCTTCGATAACGACAAGCAGGAGCTGAACGCC
CCTGCTGTGGCGTTGCCGAGGGAGCGCGCTGCTGCTGGTGACCAGGAGCA
AGACGCGGCTGCACCGGCGCTGCCGGACGGAGTCGAATTCGCGGAGCCTG
CGGCAGCGACGGACCTCGATATCACTACCCCTCCTGACTCTCCGGCCGAG
AAAGTGACAGAGCTGGTAAGGTGCACTAGCGTGTTTCAGGTGGAACAAGC
TCTTCTGACAGGGGGTGTACTCGGAAACGTCGGGACGGGCAACCCTGGAG
AAATAGGTTCCAGGTCTCCCGACCCGACCAACCAAGACGACGCAACACGT
GGACCAGATGCTGACCACTGGAGGGAGAGTATGCGCGAAGAAAATCGTTC
GCTCACGGAACTCGGCGTATACGATTGGGTGAAACGGCCGGCGGACGGTG
ATATACTTCCGTCAAGATACCTGTACAAACGGAAGTATGCAGCACACGGA
GAACTAGCTATACTGAAGAGTCGTATCGTGGTCCAAGGCTTCCATCAAGA
AGACACGGGGGAAGACAAGGCATCATCAGTGGCGACATTGGAGGCGGTAC
ATCTAGTAGTCGCCGTCGCTGCTCAGAATGGCCTTGTTCTAAAACAGGCT
GACATCAAGACAGCGTTCCTACATGCCAGGATCCCCGCTAACGCAGACCC
GATTTATGTTCGTCCTCCGAAGGGTTTCGAATGCTCTCCAGAACAAGCAC
GGCAGGTTTGGCGGCTAAAGGCATGGCTCTACGGATTGCGTCTCTCCCCG
AAAGGATGGTGCAGCACCTCCCACGACTTCCTGATTGAGAAAGGGTTCGT
ACAGAGTAAAGCAGACCCCTGTCACTACATTCTCGAAGCGGAAGGAGTTA
TCCTTTTCGTGTACGTTGACGACATTCTGCTGTCGGGGAAGGACGAGGAT
AAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAGCACGGTGTT
CTTGGAGGATGCTCAGCACCTGCTTGGTATGAAGCTCGAAAGGAACGTCG
ACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTC
AACCAGTTGGGAATGACCGAATCGCGCCCGGTGAAGACACCGGCGGAACC
TGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATTTCCAGAGGACACCA
AATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGGGCTCA
AGACCGAACATAACACACTCGGTGATGATGCTCGCGAAGAGTATGGCGAA
GCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTATCCAA
AAGGAACGACCTCTATCGGAATCACATACACCGAAGACGCCGACGGCGGA
GATAAAGTCACGGCGTACGTGGACCCTGATTTTGCAGGTGACCAAGACAA
AGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGG
ACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCT
GAAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCTGGA
CTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCTG
AAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCGTAAT
TTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGATAGTGTTTGA
GGACAACACAAGCGCTATAGCGTTTGCTAAGGGCGCCAAACTCACGCCCC
GTACTAAACATATCGACGTCAAGTATCACCACGTCCGGTACTAA