Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FP30 |
| ProteomeId | EsuBft1631_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SSF109854 |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | fk506-binding protein 5 os:rhizopus delemar (strain ra 99-880 atcc mya-4621 fgsc 9543 nrrl 43880) gn:fkbp5 pe:3 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2034 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 1.13e-149 |
| EggNOG OGs | 2CY9V@1|root,2S326@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-10_002280.1 |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1631_5a-0001 ID=EsuBft1631_5a-0001|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2034bp|location=Sequence derived from alignment at Scaffold_265:14446..16479- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGCGGCACTTGTTGGTGCAAGCAGCGAGATTCGTCCGAAGAAGCTTTGGA
GTGTGTGTGTACCACAGCCATAGACACAGCAGCTTTAGCCCTGCTATGCA
CTTCTCACCGAGACTTGTCAACACAACGGTCACGTTCCTCCGGGTTGTCG
CTGTACCGCCTTTTCGGCGCCGATGTTTCCTCAGCACAAGAACATGCTCG
CGCGCCAGCACCAATAGTAGCAGCAACGCCGACGACGCCACCGCCGGCGA
CGGAGGGACGTGTGTAGTGTCGGCAGCGATGCGTTTCCTTCAAGGCAAGA
AGAGGCTAGTGGACTGCCTTAGCCCTGCGGACTACGCCCGCATGGACCCT
GCCACCGGAGCTTCTGTAGGAGGGCACCTCAGGCATACACTCGATCACTT
CTCGAAATGCCTTCAGGCGGCGCAACAGCAACCTGCCCCCGATGAGGACG
CCGTGCCCACAACAACTCCGGTGACCATACGGTATGATCATCGGGTGAGG
GGTGGAACTATTGAGACCGACCCGGCAGCTGCATCCAGGTCCATCTCCTC
GCTTTTGCAACAACTCCAAAGCTTGCCTAGGGCCGACTATCTCCGTGCGA
AGAGGGTTGCACCAATGTTCATGCTCGGGTTGGGGGGGGGTGATAACGGC
ATCAAGGAGGAGTACGGGTTCGAGAGCAACCTCGAGCGTGAGCTCTTCTT
CTGCTGCCACCACGGCACCCATCATGACGCAATGATACGGCTGATACTGC
GGGGGATGGGGGAGAAGGGCGAGAATGCGCTGAGTCAAGCCGGCGAGGGT
TTCGGCGTTGCTCCAAGCACCATCGATTTTCTGAAGAAGAGGCATAAAAA
ATAAGGCAGTCAGTCAGGAGGAGAGGGGGAGCAACAGCAGCAGCAGGGCA
CGGATTGAGACTGTGGGAGGGGACTTTGGCTGACTGGCAGAAGAAGAGCA
AGGAGATTTCTTCCTTTGTGGCCATTTGTCTTCAACTCCGCTGGTATAGT
CTATGCGTCGATCAACAACCATCGGGGTGCGGCCTGTGAGTTGTAACGTA
CATAGTCTACTTTTACAGATATATCATCACGCAGGCCTCGTTCGGCGCGC
TTGTGATGGTACACCGTAATAAATTTCGGGTTGAGGCCCCAACCTCTGAT
GGGCTGAAAAATTCACACCCGAACTCACTTCTTGTTTGTTTGAACGGAAT
TTGTGGTCCAGCTGTGTGAGTTGCAGGACATTCGCCGTAGCTCTGTAGGC
GCTGACGGATAAATCGTCGGTTGCGGTCTGTTTCAAGTCTAAAGGGATGT
ATGTGGACTTGTGGAGATGCTGACGACTGCCTGGTGTTATTTCTCTCATG
GATTGTTGTTGGGTGTTGGAAGATGTGTCCCTTTTTGTTTCAAGTTGAAT
GTATGTGTCCTCTCGGCAGCGTGTCGCGCGAGCGGAACATGCGTGCAGTC
ACTGATGATGTGCCCAAGCAGAGCACCTCTCGTTTGTGCCATATTTTGTC
ATGGGGTCAAGGGCTACGTGTGAACCTGTGCGTCCACTGTAGAGCTGCAG
CGCGGCCGACGAACTCACTGTTGTGCCACCGGACTATTTTTAGTACCATG
AGCGATAGCTCTGAAAATACAGGAGGTCCGAAGGAGCCGATGGTTTGTCT
GAAATGTAGTTTCTTGGTCAGTGGGGACCGGAGCGGGTGCGCGCTCACTC
TCGATGCTGGCAAAGATGAATTCAACATCTGGTACTCGAACGTGCGACGT
ACCCATGGAAAGTACGGTACTGGCAAGCATGCGTAATTTTGTTGCAACAC
CGAATGCAGCTTCAACAACTGAGCTACACATGCAGATTCGGCTGCTGAGC
GTATACCGGTTCTCGCCCGTTTATGCACGGAAGTCTGAGCTACTTGCGAA
GGCACAATTTACCAATGGAAGATACCAACATATGGAATTCGTAAAATGTT
CTGATTTCCCCACACGAGTATGTCTGACGACATTGCCAGTTGTTGAAGGG
GTCATGCTGACTTAGACTTCTTTGTCACCTATCT back to topprotein sequence of EsuBft1631_5a-0001 >EsuBft1631_5 ID=EsuBft1631_5|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MHFSPRLVNTTVTFLRVVAVPPFRRRCFLSTRTCSRASTNSSSNADDATA
GDGGTCVVSAAMRFLQGKKRLVDCLSPADYARMDPATGASVGGHLRHTLD
HFSKCLQAAQQQPAPDEDAVPTTTPVTIRYDHRVRGGTIETDPAAASRSI
SSLLQQLQSLPRADYLRAKRVAPMFMLGLGGGDNGIKEEYGFESNLEREL
FFCCHHGTHHDAMIRLILRGMGEKGENALSQAGEGFGVAPSTIDFLKKRH
KK back to topmRNA from alignment at Scaffold_265:14446..16479- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1631_5a-0001 ID=EsuBft1631_5a-0001|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2034bp|location=Sequence derived from alignment at Scaffold_265:14446..16479- (Ectocarpus subulatus male Bft15b)
CGCGGCACTTGTTGGTGCAAGCAGCGAGATTCGTCCGAAGAAGCTTTGGA
GTGTGTGTGTACCACAGCCATAGACACAGCAGCTTTAGCCCTGCTATGCA
CTTCTCACCGAGACTTGTCAACACAACGGTCACGTTCCTCCGGGTTGTCG
CTGTACCGCCTTTTCGGCGCCGATGTTTCCTCAGCACAAGAACATGCTCG
CGCGCCAGCACCAATAGTAGCAGCAACGCCGACGACGCCACCGCCGGCGA
CGGAGGGACGTGTGTAGTGTCGGCAGCGATGCGTTTCCTTCAAGGCAAGA
AGAGGCTAGTGGACTGCCTTAGCCCTGCGGACTACGCCCGCATGGACCCT
GCCACCGGAGCTTCTGTAGGAGGGCACCTCAGGCATACACTCGATCACTT
CTCGAAATGCCTTCAGGCGGCGCAACAGCAACCTGCCCCCGATGAGGACG
CCGTGCCCACAACAACTCCGGTGACCATACGGTATGATCATCGGGTGAGG
GGTGGAACTATTGAGACCGACCCGGCAGCTGCATCCAGGTCCATCTCCTC
GCTTTTGCAACAACTCCAAAGCTTGCCTAGGGCCGACTATCTCCGTGCGA
AGAGGGTTGCACCAATGTTCATGCTCGGGTTGGGGGGGGGTGATAACGGC
ATCAAGGAGGAGTACGGGTTCGAGAGCAACCTCGAGCGTGAGCTCTTCTT
CTGCTGCCACCACGGCACCCATCATGACGCAATGATACGGCTGATACTGC
GGGGGATGGGGGAGAAGGGCGAGAATGCGCTGAGTCAAGCCGGCGAGGGT
TTCGGCGTTGCTCCAAGCACCATCGATTTTCTGAAGAAGAGGCATAAAAA
ATAAGGCAGTCAGTCAGGAGGAGAGGGGGAGCAACAGCAGCAGCAGGGCA
CGGATTGAGACTGTGGGAGGGGACTTTGGCTGACTGGCAGAAGAAGAGCA
AGGAGATTTCTTCCTTTGTGGCCATTTGTCTTCAACTCCGCTGGTATAGT
CTATGCGTCGATCAACAACCATCGGGGTGCGGCCTGTGAGTTGTAACGTA
CATAGTCTACTTTTACAGATATATCATCACGCAGGCCTCGTTCGGCGCGC
TTGTGATGGTACACCGTAATAAATTTCGGGTTGAGGCCCCAACCTCTGAT
GGGCTGAAAAATTCACACCCGAACTCACTTCTTGTTTGTTTGAACGGAAT
TTGTGGTCCAGCTGTGTGAGTTGCAGGACATTCGCCGTAGCTCTGTAGGC
GCTGACGGATAAATCGTCGGTTGCGGTCTGTTTCAAGTCTAAAGGGATGT
ATGTGGACTTGTGGAGATGCTGACGACTGCCTGGTGTTATTTCTCTCATG
GATTGTTGTTGGGTGTTGGAAGATGTGTCCCTTTTTGTTTCAAGTTGAAT
GTATGTGTCCTCTCGGCAGCGTGTCGCGCGAGCGGAACATGCGTGCAGTC
ACTGATGATGTGCCCAAGCAGAGCACCTCTCGTTTGTGCCATATTTTGTC
ATGGGGTCAAGGGCTACGTGTGAACCTGTGCGTCCACTGTAGAGCTGCAG
CGCGGCCGACGAACTCACTGTTGTGCCACCGGACTATTTTTAGTACCATG
AGCGATAGCTCTGAAAATACAGGAGGTCCGAAGGAGCCGATGGTTTGTCT
GAAATGTAGTTTCTTGGTCAGTGGGGACCGGAGCGGGTGCGCGCTCACTC
TCGATGCTGGCAAAGATGAATTCAACATCTGGTACTCGAACGTGCGACGT
ACCCATGGAAAGTACGGTACTGGCAAGCATGCGTAATTTTGTTGCAACAC
CGAATGCAGCTTCAACAACTGAGCTACACATGCAGATTCGGCTGCTGAGC
GTATACCGGTTCTCGCCCGTTTATGCACGGAAGTCTGAGCTACTTGCGAA
GGCACAATTTACCAATGGAAGATACCAACATATGGAATTCGTAAAATGTT
CTGATTTCCCCACACGAGTATGTCTGACGACATTGCCAGTTGTTGAAGGG
GTCATGCTGACTTAGACTTCTTTGTCACCTATCT back to topCoding sequence (CDS) from alignment at Scaffold_265:14446..16479- >EsuBft1631_5a-0001 ID=EsuBft1631_5a-0001|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_265:14446..16479- (Ectocarpus subulatus male Bft15b)
ATGCACTTCTCACCGAGACTTGTCAACACAACGGTCACGTTCCTCCGGGT
TGTCGCTGTACCGCCTTTTCGGCGCCGATGTTTCCTCAGCACAAGAACAT
GCTCGCGCGCCAGCACCAATAGTAGCAGCAACGCCGACGACGCCACCGCC
GGCGACGGAGGGACGTGTGTAGTGTCGGCAGCGATGCGTTTCCTTCAAGG
CAAGAAGAGGCTAGTGGACTGCCTTAGCCCTGCGGACTACGCCCGCATGG
ACCCTGCCACCGGAGCTTCTGTAGGAGGGCACCTCAGGCATACACTCGAT
CACTTCTCGAAATGCCTTCAGGCGGCGCAACAGCAACCTGCCCCCGATGA
GGACGCCGTGCCCACAACAACTCCGGTGACCATACGGTATGATCATCGGG
TGAGGGGTGGAACTATTGAGACCGACCCGGCAGCTGCATCCAGGTCCATC
TCCTCGCTTTTGCAACAACTCCAAAGCTTGCCTAGGGCCGACTATCTCCG
TGCGAAGAGGGTTGCACCAATGTTCATGCTCGGGTTGGGGGGGGGTGATA
ACGGCATCAAGGAGGAGTACGGGTTCGAGAGCAACCTCGAGCGTGAGCTC
TTCTTCTGCTGCCACCACGGCACCCATCATGACGCAATGATACGGCTGAT
ACTGCGGGGGATGGGGGAGAAGGGCGAGAATGCGCTGAGTCAAGCCGGCG
AGGGTTTCGGCGTTGCTCCAAGCACCATCGATTTTCTGAAGAAGAGGCAT
AAAAAATAA back to top
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