EsuBft5611_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft5611_2a-0001
Unique Name	EsuBft5611_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:486..1935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft5611_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	145
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft5611_2a	EsuBft5611_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 486..1935 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5611_2a-0001-exon	EsuBft5611_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 486..1935 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5611_2a-0001-exon	agat-five_prime_utr-11701	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_265 486..721 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5611_2a-0001-cds	EsuBft5611_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 722..874 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5611_2a-0001-exon	agat-three_prime_utr-18411	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_265 875..1935 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5611_2a-0001	EsuBft5611_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 722..874 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:486..1935+
coding sequence from alignment at Scaffold_265:486..1935+

spliced messenger RNA

>EsuBft5611_2a-0001 ID=EsuBft5611_2a-0001|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1450bp|location=Sequence derived from alignment at Scaffold_265:486..1935+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCTGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTCGCACTTAG
GGTTCTCGGTCTGAAGATTCTCGCGCCGAAGGGTCAACCAGCCCAATCAG
CTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGA
GACAGTACAGCTCCCTCTAACAAACCTAGGGCCGTGTACATAGTTCCCGT
CCACCTTCTGACGGTGTCTGCCTCCGCGCACAAAAAATGAGATGGGCATC
GCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTACATTTTTTCGCCTG
ACCCCATCAGTGCCGACCCAACTACACCACCACGCGCATGCCTCGCGGCG
GATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTA
GCCCTGCTCGCCAGAAAGACCCCCCCCTTCGCTACAACCCATGTCTAAGC
AAACGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAGCCTGCCTGAGGTAT
TTTTATCGCGAGAAGGGTACAAACAGCCTAACATCTATGTTGAGGATGGT
GCTTTTCGTTGAGGATGAAACGCACGCGGAAATGTTTCCAGCAACTGCAA
AATTATTTTTGGACAGAAACGTTTGTGTAGTAGAGGGGAGCACCCCGCGG
CGATTAGCTGTTAGTGGTGCCACCGGGGATGCCGTCTCTATCGAGCCGGT
ATTATACTTGGAATATTACATGCACGTATGGGTGTTCCTTCTTCTTAGCA
ACAACAAGAACATAATAGTTTATTACGGTGAACACTTGCGCAGTAGTTAG
GAGTAGTAATACATACTCGAGTATTGGTTGTGTCCTCTGTGGCGGTGGAT
TTGTACTACGACATACTCGGAGTACTAATAATACGGAGTATTCTCGTCGT
CTCTGTCTTGCGCTTGATGTTATTGTGCCTCTTCTTTTTGTTCTCCTCCG
AGTGTCATACTACTACTACTACTACTACTACTACTACTACTACTACTAAT
AATAATACTAATAATAATAATAATCGGTTGAACGGCGCTAGATAGACAAA
AAATGTTCTTTCATCATTTCGCGTGGTCGCAGGCTTCCTCGTTCTCCTCC
TGCTGCTGCTGTGTAACAACGGGCGGAATTCCAACTCCATCTAGTTGTGT
AGTAGTAGAAGAGCCCCTGCCCCCACGAACGAGTACTAACCCGAAGACCA
AGCTGCTCGAAAACTACCACACGCAGCAACAACAACGGCCAAACCGACGG
ACAGACAGGCTGAGACAGACATTTGATATTCTTCGTTTCAAGTTCCTCCA
AACGAAATCTCACGCTCGCTTGTTAAAAGATATAGGCAAAAAACAAATAG
AAAGGGGTATCCTCACATCCAATCTTCATTCACGTTAAAAACTACGTGTT
TGCAGCTGTGTTTGACTTCATCAATCAATCGAGAATCCCCCCGCTCCTCC

protein sequence of EsuBft5611_2a-0001

>EsuBft5611_2 ID=EsuBft5611_2|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRWASLPTPTARGPRIYIFSPDPISADPTTPPRACLAADMRSSKKVSVIP

mRNA from alignment at Scaffold_265:486..1935+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft5611_2a-0001 ID=EsuBft5611_2a-0001|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1450bp|location=Sequence derived from alignment at Scaffold_265:486..1935+ (Ectocarpus subulatus male Bft15b)
GTTGCTGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTCGCACTTAG
GGTTCTCGGTCTGAAGATTCTCGCGCCGAAGGGTCAACCAGCCCAATCAG
CTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGA
GACAGTACAGCTCCCTCTAACAAACCTAGGGCCGTGTACATAGTTCCCGT
CCACCTTCTGACGGTGTCTGCCTCCGCGCACAAAAAATGAGATGGGCATC
GCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTACATTTTTTCGCCTG
ACCCCATCAGTGCCGACCCAACTACACCACCACGCGCATGCCTCGCGGCG
GATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTA
GCCCTGCTCGCCAGAAAGACCCCCCCCTTCGCTACAACCCATGTCTAAGC
AAACGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAGCCTGCCTGAGGTAT
TTTTATCGCGAGAAGGGTACAAACAGCCTAACATCTATGTTGAGGATGGT
GCTTTTCGTTGAGGATGAAACGCACGCGGAAATGTTTCCAGCAACTGCAA
AATTATTTTTGGACAGAAACGTTTGTGTAGTAGAGGGGAGCACCCCGCGG
CGATTAGCTGTTAGTGGTGCCACCGGGGATGCCGTCTCTATCGAGCCGGT
ATTATACTTGGAATATTACATGCACGTATGGGTGTTCCTTCTTCTTAGCA
ACAACAAGAACATAATAGTTTATTACGGTGAACACTTGCGCAGTAGTTAG
GAGTAGTAATACATACTCGAGTATTGGTTGTGTCCTCTGTGGCGGTGGAT
TTGTACTACGACATACTCGGAGTACTAATAATACGGAGTATTCTCGTCGT
CTCTGTCTTGCGCTTGATGTTATTGTGCCTCTTCTTTTTGTTCTCCTCCG
AGTGTCATACTACTACTACTACTACTACTACTACTACTACTACTACTAAT
AATAATACTAATAATAATAATAATCGGTTGAACGGCGCTAGATAGACAAA
AAATGTTCTTTCATCATTTCGCGTGGTCGCAGGCTTCCTCGTTCTCCTCC
TGCTGCTGCTGTGTAACAACGGGCGGAATTCCAACTCCATCTAGTTGTGT
AGTAGTAGAAGAGCCCCTGCCCCCACGAACGAGTACTAACCCGAAGACCA
AGCTGCTCGAAAACTACCACACGCAGCAACAACAACGGCCAAACCGACGG
ACAGACAGGCTGAGACAGACATTTGATATTCTTCGTTTCAAGTTCCTCCA
AACGAAATCTCACGCTCGCTTGTTAAAAGATATAGGCAAAAAACAAATAG
AAAGGGGTATCCTCACATCCAATCTTCATTCACGTTAAAAACTACGTGTT
TGCAGCTGTGTTTGACTTCATCAATCAATCGAGAATCCCCCCGCTCCTCC

Coding sequence (CDS) from alignment at Scaffold_265:486..1935+

>EsuBft5611_2a-0001 ID=EsuBft5611_2a-0001|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_265:486..1935+ (Ectocarpus subulatus male Bft15b)
ATGAGATGGGCATCGCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTA
CATTTTTTCGCCTGACCCCATCAGTGCCGACCCAACTACACCACCACGCG
CATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCT
TGA