EsuBft1094_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_20a-0001
Unique NameEsuBft1094_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:398963..399480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1094_20
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length51
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_20aEsuBft1094_20aEctocarpus subulatus male Bft15bgeneScaffold_26 398963..399480 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_20a-0001-exonEsuBft1094_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 398963..399480 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_20a-0001-exonagat-five_prime_utr-569Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_26 398963..399024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_20a-0001-cdsEsuBft1094_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 399025..399408 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_20a-0001-exonagat-three_prime_utr-907Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_26 399409..399480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_20a-0001EsuBft1094_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 399025..399408 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_20a-0001 ID=EsuBft1094_20a-0001|Name=EsuBft1094_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_26:398963..399480+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGACCAACCAATGAAATTGCACGGAACCGTCGGAACCTCCCGAAAAGAC
CCTCTGACGCACATGCGCGAGGGCGAGGCTCGCCTGTGTGCTTTGCGCCC
TGCTATGGGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACA
TGTCTCATGACACACCCGAGCAGCAGCCGGGCGGTGAAGCCACGCATACC
CCTGCCGCCGCCGCCGCTGCTGCTGAAAAAACCAGCAGCAGCAGCAGCAG
CGGCGGCGGCAGCTGCGAGGTTGAGCCTGGCTCTCTTCCACAATTTATTA
CTATTGACCAACTCCTCCTTCGTTTCCTCCAGCGTTCTCTCTACGATGGT
GAGGCTGCCGCGTTCGAAGCGCGCCGCGTGTTATCTTCTGCTGACGCGGC
AACCATACACTGCCCCGTCCTCTCTTCAAACTTCGTTTTGTATTGATTCA
GCTTTCGCGCAGCGCGCCTCCTGCTGCCGAACGGCGCGGACCTCGATTTT
TTTTTGGGAGGGTCTGTT
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protein sequence of EsuBft1094_20a-0001

>EsuBft1094_20 ID=EsuBft1094_20|Name=EsuBft1094_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=127bp
MREGEARLCALRPAMGHSTTPLRGPTLEHMSHDTPEQQPGGEATHTPAAA
AAAAEKTSSSSSSGGGSCEVEPGSLPQFITIDQLLLRFLQRSLYDGEAAA
FEARRVLSSADAATIHCPVLSSNFVLY
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mRNA from alignment at Scaffold_26:398963..399480+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_20a-0001 ID=EsuBft1094_20a-0001|Name=EsuBft1094_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_26:398963..399480+ (Ectocarpus subulatus male Bft15b)
TCGACCAACCAATGAAATTGCACGGAACCGTCGGAACCTCCCGAAAAGAC
CCTCTGACGCACATGCGCGAGGGCGAGGCTCGCCTGTGTGCTTTGCGCCC
TGCTATGGGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACA
TGTCTCATGACACACCCGAGCAGCAGCCGGGCGGTGAAGCCACGCATACC
CCTGCCGCCGCCGCCGCTGCTGCTGAAAAAACCAGCAGCAGCAGCAGCAG
CGGCGGCGGCAGCTGCGAGGTTGAGCCTGGCTCTCTTCCACAATTTATTA
CTATTGACCAACTCCTCCTTCGTTTCCTCCAGCGTTCTCTCTACGATGGT
GAGGCTGCCGCGTTCGAAGCGCGCCGCGTGTTATCTTCTGCTGACGCGGC
AACCATACACTGCCCCGTCCTCTCTTCAAACTTCGTTTTGTATTGATTCA
GCTTTCGCGCAGCGCGCCTCCTGCTGCCGAACGGCGCGGACCTCGATTTT
TTTTTGGGAGGGTCTGTT
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Coding sequence (CDS) from alignment at Scaffold_26:398963..399480+

>EsuBft1094_20a-0001 ID=EsuBft1094_20a-0001|Name=EsuBft1094_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=384bp|location=Sequence derived from alignment at Scaffold_26:398963..399480+ (Ectocarpus subulatus male Bft15b)
ATGCGCGAGGGCGAGGCTCGCCTGTGTGCTTTGCGCCCTGCTATGGGGCA
CAGCACAACACCATTGCGCGGTCCCACTCTAGAACACATGTCTCATGACA
CACCCGAGCAGCAGCCGGGCGGTGAAGCCACGCATACCCCTGCCGCCGCC
GCCGCTGCTGCTGAAAAAACCAGCAGCAGCAGCAGCAGCGGCGGCGGCAG
CTGCGAGGTTGAGCCTGGCTCTCTTCCACAATTTATTACTATTGACCAAC
TCCTCCTTCGTTTCCTCCAGCGTTCTCTCTACGATGGTGAGGCTGCCGCG
TTCGAAGCGCGCCGCGTGTTATCTTCTGCTGACGCGGCAACCATACACTG
CCCCGTCCTCTCTTCAAACTTCGTTTTGTATTGA
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