EsuBft1094_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1094_5a-0001
Unique NameEsuBft1094_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_26contigScaffold_26:279585..281196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1094_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length127
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_5aEsuBft1094_5aEctocarpus subulatus male Bft15bgeneScaffold_26 279585..281196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_5a-0001-exonagat-exon-88948Ectocarpus subulatus male Bft15bexonScaffold_26 279585..280304 -
EsuBft1094_5a-0001-exonEsuBft1094_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_26 280555..280567 -
EsuBft1094_5a-0001-exonagat-exon-88947Ectocarpus subulatus male Bft15bexonScaffold_26 280655..281196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_5a-0001-cdsEsuBft1094_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_26 279585..280304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1094_5a-0001EsuBft1094_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_26 279585..281196 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1094_5a-0001 ID=EsuBft1094_5a-0001|Name=EsuBft1094_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1275bp|location=Sequence derived from alignment at Scaffold_26:279585..281196- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGATGGGTGGTTCGACGAAGACCTTTGGGACGCCCATCTTCCA
AGGACCGCCGGTCACTCCACCGCTGGAGCTGCACTTCCGGCAGGACCCCT
GCCTGTTCCGTGAGCGGCTGACGGACGCCTTTAGGATGGTAGGCATGGGA
ATCGTCCGCCTGGAGGAGGACGCCCCGACCGCCGCTGGCGCGGGGACCGT
CATGAAGCCCTGGCCTGACGACCGGACTGCTCTACGTTTCAGCATCGTCT
TCGACATGTTCCACAAGACCATGGCTGTCATGGCTTCCATCGCCCGCGGC
CAGGATGTCCAGGTTCATAATCTCAACGGGAGCATGGCGTGGGTGCGCTT
TCAGCACTTTTCCGTCACGGACGCCCTTCGACTTTTGGTGGCGGAAACAG
CGCGCCACAGCATCTCCGGCCGCCACGCGGCGCACGCCCTGGACAACATC
CGCCTACAGGAAGGGGAGTATTGGGAGACGGGCCTCAATCGCCTAGCACG
CATTGCGCGCGCTGCGAGCGTCCTCCCCGATCGCCCCTACCTCGCGTGGA
CCAAGGATGCCTTCTCGCGCCAAGCCAAGCAGCGCGGCTCATCCCTTGCG
CTGCTTGAAGGGGAGACTGCTGGCGTCCCGCTGTCGGTGGATCGCCAGGG
TTCGACTTCGGACTCGGACGCCGACCGAGTCGACGCCCATGTTGCTGCGG
TCGACACTGCTGGGGACGGACCCCCGGCGACCCATGCGGCCCCTCGGGCC
CCGTTCGACAGTTGCGCTACGCGGCCAGCTGGTCAATCGCGCCTTCAGGA
CTTCAGGAAGCGGGAGCGGACGCGTGGCCAAGCGGGTGATGCCGGTACAG
GAGTGCGCGACTCGAGTCGCCAGCACCGCACAGAGAGTCAAGCGCCTCAG
CCCGCAACCCGAGGGCAGCCGGCCGAGCGTGGACCACCCTCCGGCGCCCC
ACAGCTTGCCGCCGATGCGCCAGCACCCGACGCTGATCAAACGCAGATCC
AGAAGTTCATCATGCTCGATGGGGTCTGCTTCAACTATGCGACGGGATTT
CCGTGCCAAAGGATGATGCAGGATCACCACTGTCACCACCTGCACACCGG
CGAGCCCATCCCCGTCAAGGCATACCCGCGACCGCCGTCCTGGAACGCGA
CCACCCCGGTGGCGGCCGTGCAGGAATACGACGAAAACGTCCTGTACGCG
GCTGATGCCTTCGCCAGCTGGACAGACTCCTGCGGGCACGAAGCAGCGGA
GGACACGCCGGATGCCAGCGCCTGA
back to top

protein sequence of EsuBft1094_5a-0001

>EsuBft1094_5 ID=EsuBft1094_5|Name=EsuBft1094_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=424bp
MRMMGGSTKTFGTPIFQGPPVTPPLELHFRQDPCLFRERLTDAFRMVGMG
IVRLEEDAPTAAGAGTVMKPWPDDRTALRFSIVFDMFHKTMAVMASIARG
QDVQVHNLNGSMAWVRFQHFSVTDALRLLVAETARHSISGRHAAHALDNI
RLQEGEYWETGLNRLARIARAASVLPDRPYLAWTKDAFSRQAKQRGSSLA
LLEGETAGVPLSVDRQGSTSDSDADRVDAHVAAVDTAGDGPPATHAAPRA
PFDSCATRPAGQSRLQDFRKRERTRGQAGDAGTGVRDSSRQHRTESQAPQ
PATRGQPAERGPPSGAPQLAADAPAPDADQTQIQKFIMLDGVCFNYATGF
PCQRMMQDHHCHHLHTGEPIPVKAYPRPPSWNATTPVAAVQEYDENVLYA
ADAFASWTDSCGHEAAEDTPDASA
back to top

mRNA from alignment at Scaffold_26:279585..281196-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1094_5a-0001 ID=EsuBft1094_5a-0001|Name=EsuBft1094_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1612bp|location=Sequence derived from alignment at Scaffold_26:279585..281196- (Ectocarpus subulatus male Bft15b)
ATGCGCATGATGGGTGGTTCGACGAAGACCTTTGGGACGCCCATCTTCCA
AGGACCGCCGGTCACTCCACCGCTGGAGCTGCACTTCCGGCAGGACCCCT
GCCTGTTCCGTGAGCGGCTGACGGACGCCTTTAGGATGGTAGGCATGGGA
ATCGTCCGCCTGGAGGAGGACGCCCCGACCGCCGCTGGCGCGGGGACCGT
CATGAAGCCCTGGCCTGACGACCGGACTGCTCTACGTTTCAGCATCGTCT
TCGACATGTTCCACAAGACCATGGCTGTCATGGCTTCCATCGCCCGCGGC
CAGGATGTCCAGGTTCATAATCTCAACGGGAGCATGGCGTGGGTGCGCTT
TCAGCACTTTTCCGTCACGGACGCCCTTCGACTTTTGGTGGCGGAAACAG
CGCGCCACAGCATCTCCGGCCGCCACGCGGCGCACGCCCTGGACAACATC
CGCCTACAGGAAGGGGAGTATTGGGAGACGGGCCTCAATCGCCTAGCACG
CATTGCGCGCGCTGCGAGCGTCCTCCCCGATCGCCCCTACCTGTCCGAAG
AGCCATACTTTTGGACGGCAATGCGGTGGAGGACCTTCAAAATCTCATGA
ACCACGCGGTGGCCCTCTGCTTCCCGCAGCGCGTGGACCAAGGTCCGTTC
CACGCGTACCTCGTCAGCGTCATGGAGCACACCCGGCACTTGCTCCAGCA
GCACCCCATCGAATCGCACGCCCTTGGGCTCCCACCAGATGCGCCTGCGC
GGTGACCTGCAAGACTGTTATCGCAAGTTCGTCACAACCCTGGGCCAGAT
TTCGTACTACTACGCCCAACCGAGCAACCAATCGGGCGGGCAAGGCCATG
TCAGCGCTTCAGCCCCACTCTAAGCGCCTACCCCCGGGGCAGGATGCCTT
CTCGCGCCAAGCCAAGCAGCGCGGCTCATCCCTTGCGCTGCTTGAAGGGG
AGACTGCTGGCGTCCCGCTGTCGGTGGATCGCCAGGGTTCGACTTCGGAC
TCGGACGCCGACCGAGTCGACGCCCATGTTGCTGCGGTCGACACTGCTGG
GGACGGACCCCCGGCGACCCATGCGGCCCCTCGGGCCCCGTTCGACAGTT
GCGCTACGCGGCCAGCTGGTCAATCGCGCCTTCAGGACTTCAGGAAGCGG
GAGCGGACGCGTGGCCAAGCGGGTGATGCCGGTACAGGAGTGCGCGACTC
GAGTCGCCAGCACCGCACAGAGAGTCAAGCGCCTCAGCCCGCAACCCGAG
GGCAGCCGGCCGAGCGTGGACCACCCTCCGGCGCCCCACAGCTTGCCGCC
GATGCGCCAGCACCCGACGCTGATCAAACGCAGATCCAGAAGTTCATCAT
GCTCGATGGGGTCTGCTTCAACTATGCGACGGGATTTCCGTGCCAAAGGA
TGATGCAGGATCACCACTGTCACCACCTGCACACCGGCGAGCCCATCCCC
GTCAAGGCATACCCGCGACCGCCGTCCTGGAACGCGACCACCCCGGTGGC
GGCCGTGCAGGAATACGACGAAAACGTCCTGTACGCGGCTGATGCCTTCG
CCAGCTGGACAGACTCCTGCGGGCACGAAGCAGCGGAGGACACGCCGGAT
GCCAGCGCCTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_26:279585..281196-

>EsuBft1094_5a-0001 ID=EsuBft1094_5a-0001|Name=EsuBft1094_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1275bp|location=Sequence derived from alignment at Scaffold_26:279585..281196- (Ectocarpus subulatus male Bft15b)
ATGCGCATGATGGGTGGTTCGACGAAGACCTTTGGGACGCCCATCTTCCA
AGGACCGCCGGTCACTCCACCGCTGGAGCTGCACTTCCGGCAGGACCCCT
GCCTGTTCCGTGAGCGGCTGACGGACGCCTTTAGGATGGTAGGCATGGGA
ATCGTCCGCCTGGAGGAGGACGCCCCGACCGCCGCTGGCGCGGGGACCGT
CATGAAGCCCTGGCCTGACGACCGGACTGCTCTACGTTTCAGCATCGTCT
TCGACATGTTCCACAAGACCATGGCTGTCATGGCTTCCATCGCCCGCGGC
CAGGATGTCCAGGTTCATAATCTCAACGGGAGCATGGCGTGGGTGCGCTT
TCAGCACTTTTCCGTCACGGACGCCCTTCGACTTTTGGTGGCGGAAACAG
CGCGCCACAGCATCTCCGGCCGCCACGCGGCGCACGCCCTGGACAACATC
CGCCTACAGGAAGGGGAGTATTGGGAGACGGGCCTCAATCGCCTAGCACG
CATTGCGCGCGCTGCGAGCGTCCTCCCCGATCGCCCCTACCTCGCGTGGA
CCAAGGATGCCTTCTCGCGCCAAGCCAAGCAGCGCGGCTCATCCCTTGCG
CTGCTTGAAGGGGAGACTGCTGGCGTCCCGCTGTCGGTGGATCGCCAGGG
TTCGACTTCGGACTCGGACGCCGACCGAGTCGACGCCCATGTTGCTGCGG
TCGACACTGCTGGGGACGGACCCCCGGCGACCCATGCGGCCCCTCGGGCC
CCGTTCGACAGTTGCGCTACGCGGCCAGCTGGTCAATCGCGCCTTCAGGA
CTTCAGGAAGCGGGAGCGGACGCGTGGCCAAGCGGGTGATGCCGGTACAG
GAGTGCGCGACTCGAGTCGCCAGCACCGCACAGAGAGTCAAGCGCCTCAG
CCCGCAACCCGAGGGCAGCCGGCCGAGCGTGGACCACCCTCCGGCGCCCC
ACAGCTTGCCGCCGATGCGCCAGCACCCGACGCTGATCAAACGCAGATCC
AGAAGTTCATCATGCTCGATGGGGTCTGCTTCAACTATGCGACGGGATTT
CCGTGCCAAAGGATGATGCAGGATCACCACTGTCACCACCTGCACACCGG
CGAGCCCATCCCCGTCAAGGCATACCCGCGACCGCCGTCCTGGAACGCGA
CCACCCCGGTGGCGGCCGTGCAGGAATACGACGAAAACGTCCTGTACGCG
GCTGATGCCTTCGCCAGCTGGACAGACTCCTGCGGGCACGAAGCAGCGGA
GGACACGCCGGATGCCAGCGCCTGA
back to top