EsuBft336_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft336_8a-0001
Unique Name	EsuBft336_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:161429..165219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G6Q2
ProteomeId	EsuBft336_8
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	IPR027806
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	TMhelix
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	338
Hectar predicted targeting category	signal peptide
Evalue	9.26e-213
EggNOG OGs	2AWDH@1\|root,2RZYI@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft336_8a	EsuBft336_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 161429..165219 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_8a-0001-exon	agat-exon-15417	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 161429..162006 +
EsuBft336_8a-0001-exon	EsuBft336_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 162412..165219 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_8a-0001-exon	agat-five_prime_utr-8354	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 161429..161692 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_8a-0001-cds	EsuBft336_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 161693..162006 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_8a-0001-exon	agat-three_prime_utr-13176	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 163256..165219 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_8a-0001	EsuBft336_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 161693..163255 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:161429..165219+
coding sequence from alignment at Scaffold_255:161429..165219+

spliced messenger RNA

>EsuBft336_8a-0001 ID=EsuBft336_8a-0001|Name=EsuBft336_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3386bp|location=Sequence derived from alignment at Scaffold_255:161429..165219+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGTTCCCACGTTAAATTGACCCGAAAATTTTGGACTGAGATAGATTG
ACACGAAAACAAGTGACGGTTGGCAAATTGACACGAAAATAGGTACCGGT
TGGTAAATTGACACGAAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGC
CAGCAGCGGCGCAGCCTCAAGTTCCAAAAAATTCAACCCCAGCTGCATCG
CTGCACCGCCGGGAAACCCAACGGTCGCGCTCCCTCATCGCCGCATCCGA
CACGGAGCGAGGGGATGGCGCGCCTTGCGCGAGGAAGAATCCGCTACGAG
CGGTATGATGAGTGCATGCTGGTTCTTCTGCTTGCTGTGTTGTGTGCGCT
AGCTGGAGAGGAGGACATGTTCCTCGTGATGGCCATGTTTGGCCTAGCAA
AGCTGGAGGCGTATGAAGAACTGATAGCCCCAACGATCCTGGAGGGTGTG
TGCCCGATGTACAATTTCTTCGATGCAATTGGAGGCTTGGACTTTAAGGA
GCTCTTTAGGTTCGAGAAGCCTCACTTCCGCGAGCTGCTGCACGAGCTGC
AGCTCCCTGAGGAGATCGAAATTCACAGGGGAGGGTTTGGAGTTTCCAGG
GTTCCTATCGACCTTGCGCTGGCGGTGACGATCTGGCGCCTGGCATGTCC
GACGACGCTGATCCGGGACCGGCTCTTTTGGGGGATAGCGGAACAGATGA
TATGCGATATCTTCAACCTCACCATCGAAGCGATCTTTGATCGCTGGGGT
CACCTGGTAAACCAGCTGCAACATGATGCAATTCTATCAAAGATAGATAT
GTTCTGTCAGGCAATTCATGAGAAAGGTGCCCCGCTCACGCGTTGTTGGG
GCTTTATCGACGGCACTATTCGCGCGATCTCGCGACCTAAGCGTAATCAG
AGATTGTGGTACAATGGTTGGAAGCGAAAGCACGCGTTGAAGTATCAAGC
GATCGACACCCCCGATGGGATAATTCGCATGCTTTGGGGTCCCATACTCG
GGCGTCGCCACGATGTCGCCATGGTAGGGGAAAGTGGTCTGCTGCAAGAT
CTGCAGCAGTGGTTCAACGACGCAGCAGGCACCCCTTACTACGTATTCGG
CGACCCTGCGTACAGCCTTTCGCCCTGGTTGCTGGCGCCGTACAAGGGGG
TTTTAAACGCCTTCGAACAGACCTTCAACACCGCAATGAGCTCCGTCAGA
GTCTCGGTTGAATGGGGGTTCGGAAAAATCGTGGCCCTCTGGCCGTACGT
TGACTATGCCAAGAAGCAGCAGGTGGCGCTCAGCGCTTGCGGGCTTGGTA
AACAGTATGCGGTCGCCGGCATTCTGACGAATTGTCACTCGTCCTTCTAC
CGCAACAACACTTCTTTCTACTTCGGTGTAAAACCCCCGTCGCTTCGCAG
CTACCTGAACGGCGAAGGGTAGAGTGTGGGTTGATAGGCTGTAAGTGTCA
GTGGCATGGGGTGATGGTCGGGGGCGCTGGCAGAAGGTGCCGCTGAGACT
CTAGTAGTAACGAATGGCATGCTCGCTGATATGTTTGCAGAGAAGCTGAA
AGCTGATGCGGAGGTCATACTTGAGAAGGGTGATCACGTCTTCAAGAGGG
CTGCGTTCGTCCACAGGCTCGGTTAGCTGTACCACGTGAATAACGGGAGT
ATTGAACTTCATTCAAATGTGCTCCATCACCCAACGCGGTGCGCTGAAAC
GCACTGCCCGTCTACAGCAGCTCAACCACGGCATCACGCCTGAAGACGTA
GTCCTGAATACTTTCGCTTGGCCACTCTCGAGATGCACGTGACGATAAAC
CTATCGTGAACCCTGTGTTTGAACACTGCATGTCAAGAAACATGACACCC
GACTGGCTACCAGTGATGCACCACAAGCCGAATCCCGTCTAGCAACAACA
AGCAAGGGACAGACTCAAACCGAGGCAGCCACGAACGAAAATTTGCATGC
CCTACGTCCACCACGAGGCGGCGGGTTGTTCTTGCGGCCCTCAATTGGCA
GGGCCGGAGTAGCGGTAGACATACGTGACGTTTGTTTCGCGTCGGTAGTA
GCGTCTCATCGGAGCAACCATAGCCGGCATGAAGCGAAGATTACAAATGT
CTACCGCTACTCCACAATCGGAAGACAGCAATGGCTAAGAAGTGCAGAAA
CACCAAGGCGAAAACGAAAGAAACAATACAGGACGCAAGCAACCCACGGT
ACCATGCAGTGACGGAGTAGCGGTAGACATGTGTGATGTTTGTTTCATGT
CGGTAGTGACCTCTTCACTGGGGAAGCTATTGCCGGCATGAAGCAAAGAG
CGCAGATGTCTGATGGTACATCCGCCACCGGCATAAGGCAGCGAGCTAAA
ATACAGAAACATCGTAGAAGAAAGGACAAAGAAAGACAAGAAGACAAACG
CAAACATTACAAAGGGGAAAAAAATAGAAATATAACTGCAAGAAGTGGGG
GGTGGGCGGGGGCGAAGCCAGTCCGTTCCAACCTTGTAACAGAGTCAGCC
GTGAGCCATGGATGAAGGCAGGATGACGTTATAGCCGCTCCCCCCGAGGC
ACAACAACACCAAAAAAAAAATCCGGCAACCACGCCGCAGGGGCAACAGC
CGGTATGTGTATGTTGGGGGTGGGCTGGGGGGTGGGGCGGGAGATTCAGG
GTCTCCAGGAGACTCTCCCCTTAACACACGAAGAAAACACGCATTAGGGA
ACAGGAATGTCGAGGACGCAGGTGTGGGAACGCCCACGTCCAACTAAACA
ACAGGTAGGCCGATAAGGCTGGAGCGCGCAAGAGGCGTCCTTTGTAGTCA
AAATCCGTTCGCACTAGACTACAAAGACGACAGCAAGCGAACGTCGACGA
GCGGAAAATAACTGCAGGGTAGCGCACATAGAGGGGATATTCAAGAGAGA
AACAAACATGGCAGCGAAACGCGAAACGCGAAACGCACGCCGTTGGGCCC
AAGCCGCAGGGGGGGGGGGGGGACGCCGTCTGGCAATCCCAGAAAACGAA
GACACGCAAGGTCCAACCGGCGACCCGATATAGTGCACGCAGGCACCTCC
TCCATCGTACACACTCTCCGAAAGCGCTTCAATACACCACACTGGCAGAC
GGACAAAAGACAAAACACAAGACACGAAGGACAAAGATGACGCCAGAGTA
CCTTTGAGGGGAGGCAGATGAACCACCTAGCTCTAGACTGGTCTCCAAGC
CGGCTGCACGAAATTCGAACTGCCGCTCTTAATCCCTGTCCCAGCTCTCC
GCCCCCCACGCTCTGGCCTCCGGAATAAGCCCCCCCCCCTAACCCCGACA
GGACGCTTCTCATTGCCGCCAGCATCCGGGGCTCGACCGCCTCCCGTTCC
ACGCCCCCCAGTCACCCGGCCTCCCGAAGGCGCCCC

protein sequence of EsuBft336_8a-0001

>EsuBft336_8 ID=EsuBft336_8|Name=EsuBft336_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=385bp
MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMAMFGLAKLEAY
EELIAPTILEGVCPMYNFFDAIGGLDFKELFRFEKPHFRELLHELQLPEE
IEIHRGGFGVSRVPIDLALAVTIWRLACPTTLIRDRLFWGIAEQMICDIF
NLTIEAIFDRWGHLVNQLQHDAILSKIDMFCQAIHEKGAPLTRCWGFIDG
TIRAISRPKRNQRLWYNGWKRKHALKYQAIDTPDGIIRMLWGPILGRRHD
VAMVGESGLLQDLQQWFNDAAGTPYYVFGDPAYSLSPWLLAPYKGVLNAF
EQTFNTAMSSVRVSVEWGFGKIVALWPYVDYAKKQQVALSACGLGKQYAV
AGILTNCHSSFYRNNTSFYFGVKPPSLRSYLNGEG

mRNA from alignment at Scaffold_255:161429..165219+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft336_8a-0001 ID=EsuBft336_8a-0001|Name=EsuBft336_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3791bp|location=Sequence derived from alignment at Scaffold_255:161429..165219+ (Ectocarpus subulatus male Bft15b)
CTGGGTTCCCACGTTAAATTGACCCGAAAATTTTGGACTGAGATAGATTG
ACACGAAAACAAGTGACGGTTGGCAAATTGACACGAAAATAGGTACCGGT
TGGTAAATTGACACGAAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGC
CAGCAGCGGCGCAGCCTCAAGTTCCAAAAAATTCAACCCCAGCTGCATCG
CTGCACCGCCGGGAAACCCAACGGTCGCGCTCCCTCATCGCCGCATCCGA
CACGGAGCGAGGGGATGGCGCGCCTTGCGCGAGGAAGAATCCGCTACGAG
CGGTATGATGAGTGCATGCTGGTTCTTCTGCTTGCTGTGTTGTGTGCGCT
AGCTGGAGAGGAGGACATGTTCCTCGTGATGGCCATGTTTGGCCTAGCAA
AGCTGGAGGCGTATGAAGAACTGATAGCCCCAACGATCCTGGAGGGTGTG
TGCCCGATGTACAATTTCTTCGATGCAATTGGAGGCTTGGACTTTAAGGA
GCTCTTTAGGTTCGAGAAGCCTCACTTCCGCGAGCTGCTGCACGAGCTGC
AGCTCCCTGAGGAGATCGAAATTCACAGGTCAGTCGGAGTCGTGTGCGTT
TGAGAACTCTGCGGTAGTTGCTGTATGCGACGGGCAGGGCGCGTCGGGGT
TGTGCTACTGCTGTGGACAGGCTTCTCATCTCAGCACGTAGGAATCATAC
CCGTGTCCTGAGTATCACGGAGGTGCACATAGTTTCAGACAGCATCAATG
ATAGCGAAGCAGTTGATACAGCAGTAGTCTAGACTATTGATTTTTGAAAT
GTGTTTTTGAGGTCATACCTGCTGTACTACAGCAGTCTACACGTGTAGCA
CATATAGTCACCGCACTCTCCATGCGTTCACCACGCGTGGTACTTCTCCC
CCCGCCCGTTTTCGCCCTATAGCACCGAAACTGACGGCAGCAATGGAACA
TGACTTTGCTCCTTGTGTCTGTCCGGTCAACAGGGGAGGGTTTGGAGTTT
CCAGGGTTCCTATCGACCTTGCGCTGGCGGTGACGATCTGGCGCCTGGCA
TGTCCGACGACGCTGATCCGGGACCGGCTCTTTTGGGGGATAGCGGAACA
GATGATATGCGATATCTTCAACCTCACCATCGAAGCGATCTTTGATCGCT
GGGGTCACCTGGTAAACCAGCTGCAACATGATGCAATTCTATCAAAGATA
GATATGTTCTGTCAGGCAATTCATGAGAAAGGTGCCCCGCTCACGCGTTG
TTGGGGCTTTATCGACGGCACTATTCGCGCGATCTCGCGACCTAAGCGTA
ATCAGAGATTGTGGTACAATGGTTGGAAGCGAAAGCACGCGTTGAAGTAT
CAAGCGATCGACACCCCCGATGGGATAATTCGCATGCTTTGGGGTCCCAT
ACTCGGGCGTCGCCACGATGTCGCCATGGTAGGGGAAAGTGGTCTGCTGC
AAGATCTGCAGCAGTGGTTCAACGACGCAGCAGGCACCCCTTACTACGTA
TTCGGCGACCCTGCGTACAGCCTTTCGCCCTGGTTGCTGGCGCCGTACAA
GGGGGTTTTAAACGCCTTCGAACAGACCTTCAACACCGCAATGAGCTCCG
TCAGAGTCTCGGTTGAATGGGGGTTCGGAAAAATCGTGGCCCTCTGGCCG
TACGTTGACTATGCCAAGAAGCAGCAGGTGGCGCTCAGCGCTTGCGGGCT
TGGTAAACAGTATGCGGTCGCCGGCATTCTGACGAATTGTCACTCGTCCT
TCTACCGCAACAACACTTCTTTCTACTTCGGTGTAAAACCCCCGTCGCTT
CGCAGCTACCTGAACGGCGAAGGGTAGAGTGTGGGTTGATAGGCTGTAAG
TGTCAGTGGCATGGGGTGATGGTCGGGGGCGCTGGCAGAAGGTGCCGCTG
AGACTCTAGTAGTAACGAATGGCATGCTCGCTGATATGTTTGCAGAGAAG
CTGAAAGCTGATGCGGAGGTCATACTTGAGAAGGGTGATCACGTCTTCAA
GAGGGCTGCGTTCGTCCACAGGCTCGGTTAGCTGTACCACGTGAATAACG
GGAGTATTGAACTTCATTCAAATGTGCTCCATCACCCAACGCGGTGCGCT
GAAACGCACTGCCCGTCTACAGCAGCTCAACCACGGCATCACGCCTGAAG
ACGTAGTCCTGAATACTTTCGCTTGGCCACTCTCGAGATGCACGTGACGA
TAAACCTATCGTGAACCCTGTGTTTGAACACTGCATGTCAAGAAACATGA
CACCCGACTGGCTACCAGTGATGCACCACAAGCCGAATCCCGTCTAGCAA
CAACAAGCAAGGGACAGACTCAAACCGAGGCAGCCACGAACGAAAATTTG
CATGCCCTACGTCCACCACGAGGCGGCGGGTTGTTCTTGCGGCCCTCAAT
TGGCAGGGCCGGAGTAGCGGTAGACATACGTGACGTTTGTTTCGCGTCGG
TAGTAGCGTCTCATCGGAGCAACCATAGCCGGCATGAAGCGAAGATTACA
AATGTCTACCGCTACTCCACAATCGGAAGACAGCAATGGCTAAGAAGTGC
AGAAACACCAAGGCGAAAACGAAAGAAACAATACAGGACGCAAGCAACCC
ACGGTACCATGCAGTGACGGAGTAGCGGTAGACATGTGTGATGTTTGTTT
CATGTCGGTAGTGACCTCTTCACTGGGGAAGCTATTGCCGGCATGAAGCA
AAGAGCGCAGATGTCTGATGGTACATCCGCCACCGGCATAAGGCAGCGAG
CTAAAATACAGAAACATCGTAGAAGAAAGGACAAAGAAAGACAAGAAGAC
AAACGCAAACATTACAAAGGGGAAAAAAATAGAAATATAACTGCAAGAAG
TGGGGGGTGGGCGGGGGCGAAGCCAGTCCGTTCCAACCTTGTAACAGAGT
CAGCCGTGAGCCATGGATGAAGGCAGGATGACGTTATAGCCGCTCCCCCC
GAGGCACAACAACACCAAAAAAAAAATCCGGCAACCACGCCGCAGGGGCA
ACAGCCGGTATGTGTATGTTGGGGGTGGGCTGGGGGGTGGGGCGGGAGAT
TCAGGGTCTCCAGGAGACTCTCCCCTTAACACACGAAGAAAACACGCATT
AGGGAACAGGAATGTCGAGGACGCAGGTGTGGGAACGCCCACGTCCAACT
AAACAACAGGTAGGCCGATAAGGCTGGAGCGCGCAAGAGGCGTCCTTTGT
AGTCAAAATCCGTTCGCACTAGACTACAAAGACGACAGCAAGCGAACGTC
GACGAGCGGAAAATAACTGCAGGGTAGCGCACATAGAGGGGATATTCAAG
AGAGAAACAAACATGGCAGCGAAACGCGAAACGCGAAACGCACGCCGTTG
GGCCCAAGCCGCAGGGGGGGGGGGGGGACGCCGTCTGGCAATCCCAGAAA
ACGAAGACACGCAAGGTCCAACCGGCGACCCGATATAGTGCACGCAGGCA
CCTCCTCCATCGTACACACTCTCCGAAAGCGCTTCAATACACCACACTGG
CAGACGGACAAAAGACAAAACACAAGACACGAAGGACAAAGATGACGCCA
GAGTACCTTTGAGGGGAGGCAGATGAACCACCTAGCTCTAGACTGGTCTC
CAAGCCGGCTGCACGAAATTCGAACTGCCGCTCTTAATCCCTGTCCCAGC
TCTCCGCCCCCCACGCTCTGGCCTCCGGAATAAGCCCCCCCCCCTAACCC
CGACAGGACGCTTCTCATTGCCGCCAGCATCCGGGGCTCGACCGCCTCCC
GTTCCACGCCCCCCAGTCACCCGGCCTCCCGAAGGCGCCCC

Coding sequence (CDS) from alignment at Scaffold_255:161429..165219+

>EsuBft336_8a-0001 ID=EsuBft336_8a-0001|Name=EsuBft336_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1158bp|location=Sequence derived from alignment at Scaffold_255:161429..165219+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTTGCGCGAGGAAGAATCCGCTACGAGCGGTATGATGAGTG
CATGCTGGTTCTTCTGCTTGCTGTGTTGTGTGCGCTAGCTGGAGAGGAGG
ACATGTTCCTCGTGATGGCCATGTTTGGCCTAGCAAAGCTGGAGGCGTAT
GAAGAACTGATAGCCCCAACGATCCTGGAGGGTGTGTGCCCGATGTACAA
TTTCTTCGATGCAATTGGAGGCTTGGACTTTAAGGAGCTCTTTAGGTTCG
AGAAGCCTCACTTCCGCGAGCTGCTGCACGAGCTGCAGCTCCCTGAGGAG
ATCGAAATTCACAGGGGAGGGTTTGGAGTTTCCAGGGTTCCTATCGACCT
TGCGCTGGCGGTGACGATCTGGCGCCTGGCATGTCCGACGACGCTGATCC
GGGACCGGCTCTTTTGGGGGATAGCGGAACAGATGATATGCGATATCTTC
AACCTCACCATCGAAGCGATCTTTGATCGCTGGGGTCACCTGGTAAACCA
GCTGCAACATGATGCAATTCTATCAAAGATAGATATGTTCTGTCAGGCAA
TTCATGAGAAAGGTGCCCCGCTCACGCGTTGTTGGGGCTTTATCGACGGC
ACTATTCGCGCGATCTCGCGACCTAAGCGTAATCAGAGATTGTGGTACAA
TGGTTGGAAGCGAAAGCACGCGTTGAAGTATCAAGCGATCGACACCCCCG
ATGGGATAATTCGCATGCTTTGGGGTCCCATACTCGGGCGTCGCCACGAT
GTCGCCATGGTAGGGGAAAGTGGTCTGCTGCAAGATCTGCAGCAGTGGTT
CAACGACGCAGCAGGCACCCCTTACTACGTATTCGGCGACCCTGCGTACA
GCCTTTCGCCCTGGTTGCTGGCGCCGTACAAGGGGGTTTTAAACGCCTTC
GAACAGACCTTCAACACCGCAATGAGCTCCGTCAGAGTCTCGGTTGAATG
GGGGTTCGGAAAAATCGTGGCCCTCTGGCCGTACGTTGACTATGCCAAGA
AGCAGCAGGTGGCGCTCAGCGCTTGCGGGCTTGGTAAACAGTATGCGGTC
GCCGGCATTCTGACGAATTGTCACTCGTCCTTCTACCGCAACAACACTTC
TTTCTACTTCGGTGTAAAACCCCCGTCGCTTCGCAGCTACCTGAACGGCG
AAGGGTAG