EsuBft2535_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2535_4a-0001
Unique NameEsuBft2535_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:33196..34084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2535_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length88
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_4aEsuBft2535_4aEctocarpus subulatus male Bft15bgeneScaffold_255 33196..34084 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_4a-0001-exonEsuBft2535_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 33196..34084 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_4a-0001-exonagat-three_prime_utr-10241Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 33196..33710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_4a-0001-cdsEsuBft2535_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 33711..33947 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_4a-0001-exonagat-five_prime_utr-6552Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 33948..34084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_4a-0001EsuBft2535_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 33711..33947 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2535_4a-0001 ID=EsuBft2535_4a-0001|Name=EsuBft2535_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=889bp|location=Sequence derived from alignment at Scaffold_255:33196..34084- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCAGACCGGGCGACGGAGATGATAACGTCGAACTCAGCTTCAAAATTG
GCACCGAGCTTCAAAAAGTCGAAGTGGTTGTGGCGAGACACCGTATTTTC
GTCACCCCCAACTTCGGTTCTCGCTTCCCAACTACTCATGCTGCGGTATA
ACATTTGCACCCACTTATGCCCCTCTTCGTCGTGCTTGATTTTTTTGTCA
AACAGAAACAGGCCCCACATGTTCTTCTTGTACAGCTGCACCAACTGCCC
TCTCCCGGTAGGCTTCCAAACCGCAATGTTGACCCCGTACATTTCGGGGA
TGAGTGAAAGCCAGCACAAGTCCAGCCACTCCGTCCGTAGCTTCTCTTGC
ACTATCGAATCCAGCCAACGGTAGGTCATCACGCCTTTGTCCGCGGGTTC
AGGTGTGTTCAGCTCATTCGGATGCATCCGGAAAGTTTCAGTGCACTGAA
GAGCGCGAGCCCGACGCGTCTGCTCAGTCAGTTGCACAGTGGTCGTGACC
GCTTGCGACGCTGATGGTCCTAGGATGTGGGAGATGATGCTGTGTTTGAG
GGCACTCTTCACACCATCAGACATTCGTGGAACAAGCATGTTCGTCTGTC
CAAGACTCGCCTGGAGACCTTTCAGCAAGGCGTGGTAAGCACAATCACCA
TCTCCGGCAACCTCGTGTGCTTGAGCTTCTCCCGGGGGCGTGAACGTGCG
GCGGGATTCCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2535_4a-0001

>EsuBft2535_4 ID=EsuBft2535_4|Name=EsuBft2535_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MLRYNICTHLCPSSSCLIFLSNRNRPHMFFLYSCTNCPLPVGFQTAMLTP
YISGMSESQHKSSHSVRSFSCTIESSQR
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mRNA from alignment at Scaffold_255:33196..34084-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2535_4a-0001 ID=EsuBft2535_4a-0001|Name=EsuBft2535_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=889bp|location=Sequence derived from alignment at Scaffold_255:33196..34084- (Ectocarpus subulatus male Bft15b)
TTCCAGACCGGGCGACGGAGATGATAACGTCGAACTCAGCTTCAAAATTG
GCACCGAGCTTCAAAAAGTCGAAGTGGTTGTGGCGAGACACCGTATTTTC
GTCACCCCCAACTTCGGTTCTCGCTTCCCAACTACTCATGCTGCGGTATA
ACATTTGCACCCACTTATGCCCCTCTTCGTCGTGCTTGATTTTTTTGTCA
AACAGAAACAGGCCCCACATGTTCTTCTTGTACAGCTGCACCAACTGCCC
TCTCCCGGTAGGCTTCCAAACCGCAATGTTGACCCCGTACATTTCGGGGA
TGAGTGAAAGCCAGCACAAGTCCAGCCACTCCGTCCGTAGCTTCTCTTGC
ACTATCGAATCCAGCCAACGGTAGGTCATCACGCCTTTGTCCGCGGGTTC
AGGTGTGTTCAGCTCATTCGGATGCATCCGGAAAGTTTCAGTGCACTGAA
GAGCGCGAGCCCGACGCGTCTGCTCAGTCAGTTGCACAGTGGTCGTGACC
GCTTGCGACGCTGATGGTCCTAGGATGTGGGAGATGATGCTGTGTTTGAG
GGCACTCTTCACACCATCAGACATTCGTGGAACAAGCATGTTCGTCTGTC
CAAGACTCGCCTGGAGACCTTTCAGCAAGGCGTGGTAAGCACAATCACCA
TCTCCGGCAACCTCGTGTGCTTGAGCTTCTCCCGGGGGCGTGAACGTGCG
GCGGGATTCCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_255:33196..34084-

>EsuBft2535_4a-0001 ID=EsuBft2535_4a-0001|Name=EsuBft2535_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_255:33196..34084- (Ectocarpus subulatus male Bft15b)
ATGCTGCGGTATAACATTTGCACCCACTTATGCCCCTCTTCGTCGTGCTT
GATTTTTTTGTCAAACAGAAACAGGCCCCACATGTTCTTCTTGTACAGCT
GCACCAACTGCCCTCTCCCGGTAGGCTTCCAAACCGCAATGTTGACCCCG
TACATTTCGGGGATGAGTGAAAGCCAGCACAAGTCCAGCCACTCCGTCCG
TAGCTTCTCTTGCACTATCGAATCCAGCCAACGGTAG
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