EsuBft1065_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1065_6a-0001
Unique Name	EsuBft1065_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:891300..893354 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1065_6
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	205
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_6a	EsuBft1065_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 891300..893354 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_6a-0001-exon	EsuBft1065_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 891300..893354 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_6a-0001-exon	agat-three_prime_utr-640	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 891300..892364 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_6a-0001-cds	EsuBft1065_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 892365..893354 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_6a-0001	EsuBft1065_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 892365..893354 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:891300..893354-
coding sequence from alignment at Scaffold_246:891300..893354-

spliced messenger RNA

>EsuBft1065_6a-0001 ID=EsuBft1065_6a-0001|Name=EsuBft1065_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2055bp|location=Sequence derived from alignment at Scaffold_246:891300..893354- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCAAGGCCCTGAGGACGCAAGTTC
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGAAAGGTACC
ATGAAGGCAAGCAAGAAGGAGGGGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCC
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCTGTCAGGGCGACACAGCGGCGGAGCAGG
GGGCTTTGTCCCTCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATAGTAGTGCCATGGGAGATGATGGTGCTGCTGCTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACGCTTCTCCTCC
GTTCAGCGGCAAATCGAAAAATTTTAACGAATGGCTAAATGATTTCCGCA
TGGCAGCTAATGGCGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGC
TTGGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CTCACGCGTTGAAAGAAAAAGATGGGAAGATCATGAAGAGGGCAGAGACG
CCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACAACCCTGAATCATC
TGTACAGCCGTCAGAGGGCCTCAAGTCCCTTATGTCGACCAAGATCTCTA
GAGGTGAAAACCCCCAAAATGCCCTAAATGAGATTTTCCAGACCGCAAAA
GTCCTTATCCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACC
TGTTCCTGGATGTCGTTTCGGACGAGTATGCCATGACTAAGCACAACCTG
CGACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGAC
CAAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGG
CGAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGACCGCAGGGAG
CGGTACTCAAGTCGGAGTCAGGGACAAGGTCGTGGTCGTGGCGGCGGCCG
TGGCCGCAGCAGCAGTCGTGACCGCGGCGGAGGCGGTCGCGGCGGCGGCG
GCGGCGGTCGCGGCGGCCGCTCTGGCGGATCCGGAGGAGTCGAGGAGAGC
AAGGGAAGTAGCAGTGGAGGCGCCGATGGCGGTGGTGGCGGGGATTATAA
GTTCCCGGGTCGGTGCTTTAGGTGTGGACATCTTGGACATCAAGCGATCG
GCTGCACTACCAACGAGAAGGACTTCGTGCGTGGTGTGCGCGCTGCGAGG
GGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCG
CAAGTGGTGTAGCATGAGAGCGACGTGGACTCCGTGGAAGACCAGGCGTT
TTGTGCCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCGTTGGTGAAGTAG
GTCTAGTGGGGATTGTGGAACAAAGGCCAGGCGGTGTACGTGGCCGACAC
AGCGTCCACGTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACC
GTGAGCGTAGCAGTTAGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTT
CCTCTTCTAGGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGG
TGGAATACCGGTACCAGTACTGAATGCTGCCCATGTACCAGAGGCCCCCT
ACAACCTCCTCTCGCTGTCTTCGTTGGCGGAGGAGAGCCACACGTATTCG
GGGGTGAAGGGGGGCCTCACGCTGACCATGAAAGCCGGGGGGAGTTGTGG
TTCCCCGGGACTGGAAAGCTGCTGACCCAACGAGGCTATCAAATAAAGCC
AACGCTACACACCGCCTGTGCCGCACTCATTGTTCCTGGCGATGAGAAAG
CAGCC

protein sequence of EsuBft1065_6a-0001

>EsuBft1065_6 ID=EsuBft1065_6|Name=EsuBft1065_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MSGRKDGGDSSSDSAAEDRKRSREELKALRTQVRSLTDQMSQLMSLVKGT
MKASKKEGPAGTMEGAADRGDARESAAAESTNAQGGAPWTGSAQDGRYLR
EPVRESGLSGRHSGGAGGFVPQEVRVAAAHNQDYSSAMGDDGAAAGFGYG
ATTPATGYQSVRYASPPFSGKSKNFNEWLNDFRMAANGANLLEQFEESGS
LEIPVNSGKSKFSLSQQYRSEQVELAFHAWNFLSHALKEKDGKIMKRAET
PQGALRELKTIHNPESSVQPSEGLKSLMSTKISRGENPQNALNEIFQTAK
VLIRERTNCQRNVRPSPVPGCRFGRVCHD

mRNA from alignment at Scaffold_246:891300..893354-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1065_6a-0001 ID=EsuBft1065_6a-0001|Name=EsuBft1065_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2055bp|location=Sequence derived from alignment at Scaffold_246:891300..893354- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCAAGGCCCTGAGGACGCAAGTTC
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGAAAGGTACC
ATGAAGGCAAGCAAGAAGGAGGGGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCC
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCTGTCAGGGCGACACAGCGGCGGAGCAGG
GGGCTTTGTCCCTCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATAGTAGTGCCATGGGAGATGATGGTGCTGCTGCTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACGCTTCTCCTCC
GTTCAGCGGCAAATCGAAAAATTTTAACGAATGGCTAAATGATTTCCGCA
TGGCAGCTAATGGCGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGC
TTGGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CTCACGCGTTGAAAGAAAAAGATGGGAAGATCATGAAGAGGGCAGAGACG
CCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACAACCCTGAATCATC
TGTACAGCCGTCAGAGGGCCTCAAGTCCCTTATGTCGACCAAGATCTCTA
GAGGTGAAAACCCCCAAAATGCCCTAAATGAGATTTTCCAGACCGCAAAA
GTCCTTATCCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACC
TGTTCCTGGATGTCGTTTCGGACGAGTATGCCATGACTAAGCACAACCTG
CGACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGAC
CAAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGG
CGAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGACCGCAGGGAG
CGGTACTCAAGTCGGAGTCAGGGACAAGGTCGTGGTCGTGGCGGCGGCCG
TGGCCGCAGCAGCAGTCGTGACCGCGGCGGAGGCGGTCGCGGCGGCGGCG
GCGGCGGTCGCGGCGGCCGCTCTGGCGGATCCGGAGGAGTCGAGGAGAGC
AAGGGAAGTAGCAGTGGAGGCGCCGATGGCGGTGGTGGCGGGGATTATAA
GTTCCCGGGTCGGTGCTTTAGGTGTGGACATCTTGGACATCAAGCGATCG
GCTGCACTACCAACGAGAAGGACTTCGTGCGTGGTGTGCGCGCTGCGAGG
GGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCG
CAAGTGGTGTAGCATGAGAGCGACGTGGACTCCGTGGAAGACCAGGCGTT
TTGTGCCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCGTTGGTGAAGTAG
GTCTAGTGGGGATTGTGGAACAAAGGCCAGGCGGTGTACGTGGCCGACAC
AGCGTCCACGTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACC
GTGAGCGTAGCAGTTAGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTT
CCTCTTCTAGGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGG
TGGAATACCGGTACCAGTACTGAATGCTGCCCATGTACCAGAGGCCCCCT
ACAACCTCCTCTCGCTGTCTTCGTTGGCGGAGGAGAGCCACACGTATTCG
GGGGTGAAGGGGGGCCTCACGCTGACCATGAAAGCCGGGGGGAGTTGTGG
TTCCCCGGGACTGGAAAGCTGCTGACCCAACGAGGCTATCAAATAAAGCC
AACGCTACACACCGCCTGTGCCGCACTCATTGTTCCTGGCGATGAGAAAG
CAGCC

Coding sequence (CDS) from alignment at Scaffold_246:891300..893354-

>EsuBft1065_6a-0001 ID=EsuBft1065_6a-0001|Name=EsuBft1065_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_246:891300..893354- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCAAGGCCCTGAGGACGCAAGTTC
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGAAAGGTACC
ATGAAGGCAAGCAAGAAGGAGGGGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCC
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCTGTCAGGGCGACACAGCGGCGGAGCAGG
GGGCTTTGTCCCTCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATAGTAGTGCCATGGGAGATGATGGTGCTGCTGCTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACGCTTCTCCTCC
GTTCAGCGGCAAATCGAAAAATTTTAACGAATGGCTAAATGATTTCCGCA
TGGCAGCTAATGGCGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGC
TTGGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CTCACGCGTTGAAAGAAAAAGATGGGAAGATCATGAAGAGGGCAGAGACG
CCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACAACCCTGAATCATC
TGTACAGCCGTCAGAGGGCCTCAAGTCCCTTATGTCGACCAAGATCTCTA
GAGGTGAAAACCCCCAAAATGCCCTAAATGAGATTTTCCAGACCGCAAAA
GTCCTTATCCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACC
TGTTCCTGGATGTCGTTTCGGACGAGTATGCCATGACTAA