EsuBft2637_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2637_2a-0001
Unique NameEsuBft2637_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:2495..4217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004988912.1
ProteomeIdEsuBft2637_2
Protein domainsSSF56672
Protein domainsG3DSA
Protein domainsIPR000477
Protein domainsPTHR10178
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon3
Max annot lvl33154|Opisthokonta
Length1012
Hectar predicted targeting categoryother localisation
Evalue4.28e-62
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39ZVA@33154|Opisthokonta
Date last modified2016-06-15
Date creation2016-06-15
DescriptiondUTP metabolic process
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2637_2aEsuBft2637_2aEctocarpus subulatus male Bft15bgeneScaffold_246 2495..4217 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2637_2a-0001-exonagat-exon-9537Ectocarpus subulatus male Bft15bexonScaffold_246 2495..2565 +
EsuBft2637_2a-0001-exonEsuBft2637_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 3235..3646 +
EsuBft2637_2a-0001-exonagat-exon-9536Ectocarpus subulatus male Bft15bexonScaffold_246 3689..4217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2637_2a-0001-cdsEsuBft2637_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 2495..2565 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2637_2a-0001-exonagat-three_prime_utr-10624Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 4112..4217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2637_2a-0001EsuBft2637_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 2495..4111 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2637_2a-0001 ID=EsuBft2637_2a-0001|Name=EsuBft2637_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1012bp|location=Sequence derived from alignment at Scaffold_246:2495..4217+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTACCAACTTCGCTATGCAGGCAAAAATTCCGTTCAACTTCAC
CCAGAGCATAGCCTCATTCAGCGCACCCGTCAAATCTCGCCCCTACCGCG
TCAATCCCCCGGTGGCGAAACAAGTTGATGCGATCCTTGACCAGTATCTT
GCGGCAGGTTTGATCCAACATTCGACCTCGCCTTACTCGAGCCCTTTGGT
AGTCATACCGAAGAAATCTGGTGGTGTTCGCAACACCGTCAATTATCGCA
AGCTCCATAAGCTTTGTGCTTTGAGCCAGCTTCCGATTCCTCGAGTTGAT
GATACTTTGGACAAGTTGTTGAAAGGGCGAATTTATTCCCTTTTCGATAT
GAAATCTTCGTTCCGCCAAATCACGGTGCACCGCGATACAATCCCTTTGA
CGGCATTCGTGACATCTTCCGGGCTTTTCGAGTGGTTGAATATGCCTCAA
GGCAGTTCGGCTGCCCCTGGGTGGTTTTGCAAATACTTGGATGATTTGAT
CGTCTTTGATGACACCCCTGCTACTCATGTTGGTACCATGCGCGCATGCT
TTGAACGCTTGCGTACGCACAACTTGAAACTCACGCCTCCGAAAGCTACT
ATTGGCGCTACTGAAGCGGACTTCCTGGGACACACCATCTCCCCTGACGG
CGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCTCACCAAAATGCCTATGC
CTAGGGATGTCAAGCAACTACGCCGCCTTCTCGGTGGTCTCAGCTACTAC
CGTAAGTTCCTCCCCACCATGGCTAAACGCATTCGACCTCTGACTACTCT
ACTCAAGAAGCAGAAGAAGTTTACCTTCACCCCTTCCATGGAGCAAGCCG
TTCGCGTTTTACTAGCTGAGTTGGCCAATCCCCCTGTTTTGGTTTATCCA
GATTAGGATGCCGCTTCAGACGGCTCGCGACCTTGTCATCTTTACTGTGA
TGCTAGTCGCGATGAGTGTGGTGGGACTCTCGAACAAGAACAGCCACATG
GTTCCATTCTCC
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protein sequence of EsuBft2637_2a-0001

>EsuBft2637_2 ID=EsuBft2637_2|Name=EsuBft2637_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=301bp
MEATNFAMQAKIPFNFTQSIASFSAPVKSRPYRVNPPVAKQVDAILDQYL
AAGLIQHSTSPYSSPLVVIPKKSGGVRNTVNYRKLHKLCALSQLPIPRVD
DTLDKLLKGRIYSLFDMKSSFRQITVHRDTIPLTAFVTSSGLFEWLNMPQ
GSSAAPGWFCKYLDDLIVFDDTPATHVGTMRACFERLRTHNLKLTPPKAT
IGATEADFLGHTISPDGVRPNGAKVSALTKMPMPRDVKQLRRLLGGLSYY
RKFLPTMAKRIRPLTTLLKKQKKFTFTPSMEQAVRVLLAELANPPVLVYP
D
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mRNA from alignment at Scaffold_246:2495..4217+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2637_2a-0001 ID=EsuBft2637_2a-0001|Name=EsuBft2637_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1723bp|location=Sequence derived from alignment at Scaffold_246:2495..4217+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCTACCAACTTCGCTATGCAGGCAAAAATTCCGTTCAACTTCAC
CCAGAGCATAGCCTCATTCAGGTCAATTTGGTACGCAATGATGGCTCGCC
TGCCCTTGTGGGGAACTATTTGGTGGATATGCTTCCCCAATGTGCTATGT
TTTCTTCCGAGGAAAATTTTGTGCAAAATGGCTGCCAACGAATCCCTCTT
GCGGGCATCTCGTCTCTCGAACCCGGCGACGTTCTGGGTACAGCTTCGGC
TCCCCTTCTTCGAGTGCCTGTTAGCGCTGTTTCTCGCCACAGCTTGAGCG
ATGGTCTTGAAACTGCGGCTTCAGAATCCACCGCTTCTTCAGACAACTGG
GTCCCTGGTCCTGTTTCTGCAGGTGGCCTTGATTTGTCTGCCACGCACTC
CGTCTCTGACCCCTTTGTGTATAATTACACGAGCGACCCATCCCGTCGCC
AAGCGACCTAGGGACTTTAGTTCCGTCAGTCCTCCCTCTTCGTCGCCTTC
GCCTGCTCTCCTCGAGCGGTTGACGCCAGAACAGCGTCAAAGTTTCTCCC
AAGTCTGGGATAAGCTCCCCTGCCATCTCCGTGAGATTACTTTTGACCTC
CACTGCCCGGGTTGGACTCCCGATGCCATTACTCAGCTTGGTAACGTTTT
GTGCGAATACCATGATGTGTTTTCGAGTTCTCCGATCGACTGTGGATCTT
GTTCGTTTTTTCCTTTTAAGCTTACAGTTCCTCTTGGCAGCGCACCCGTC
AAATCTCGCCCCTACCGCGTCAATCCCCCGGTGGCGAAACAAGTTGATGC
GATCCTTGACCAGTATCTTGCGGCAGGTTTGATCCAACATTCGACCTCGC
CTTACTCGAGCCCTTTGGTAGTCATACCGAAGAAATCTGGTGGTGTTCGC
AACACCGTCAATTATCGCAAGCTCCATAAGCTTTGTGCTTTGAGCCAGCT
TCCGATTCCTCGAGTTGATGATACTTTGGACAAGTTGTTGAAAGGGCGAA
TTTATTCCCTTTTCGATATGAAATCTTCGTTCCGCCAAATCACGGTGCAC
CGCGATACAATCCCTTTGACGGCATTCGTGACATCTTCCGGGCTTTTCGA
GTGGTTGAATATGCCTCAAGGCAGTTCGGCTGCCCCTGGGTGGTTTTGCA
AAGTTGTCAACGAAGTCATCAAAAATCTCCGCGGTGTTGCATAGTACTTG
GATGATTTGATCGTCTTTGATGACACCCCTGCTACTCATGTTGGTACCAT
GCGCGCATGCTTTGAACGCTTGCGTACGCACAACTTGAAACTCACGCCTC
CGAAAGCTACTATTGGCGCTACTGAAGCGGACTTCCTGGGACACACCATC
TCCCCTGACGGCGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCTCACCAA
AATGCCTATGCCTAGGGATGTCAAGCAACTACGCCGCCTTCTCGGTGGTC
TCAGCTACTACCGTAAGTTCCTCCCCACCATGGCTAAACGCATTCGACCT
CTGACTACTCTACTCAAGAAGCAGAAGAAGTTTACCTTCACCCCTTCCAT
GGAGCAAGCCGTTCGCGTTTTACTAGCTGAGTTGGCCAATCCCCCTGTTT
TGGTTTATCCAGATTAGGATGCCGCTTCAGACGGCTCGCGACCTTGTCAT
CTTTACTGTGATGCTAGTCGCGATGAGTGTGGTGGGACTCTCGAACAAGA
ACAGCCACATGGTTCCATTCTCC
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Coding sequence (CDS) from alignment at Scaffold_246:2495..4217+

>EsuBft2637_2a-0001 ID=EsuBft2637_2a-0001|Name=EsuBft2637_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=906bp|location=Sequence derived from alignment at Scaffold_246:2495..4217+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCTACCAACTTCGCTATGCAGGCAAAAATTCCGTTCAACTTCAC
CCAGAGCATAGCCTCATTCAGCGCACCCGTCAAATCTCGCCCCTACCGCG
TCAATCCCCCGGTGGCGAAACAAGTTGATGCGATCCTTGACCAGTATCTT
GCGGCAGGTTTGATCCAACATTCGACCTCGCCTTACTCGAGCCCTTTGGT
AGTCATACCGAAGAAATCTGGTGGTGTTCGCAACACCGTCAATTATCGCA
AGCTCCATAAGCTTTGTGCTTTGAGCCAGCTTCCGATTCCTCGAGTTGAT
GATACTTTGGACAAGTTGTTGAAAGGGCGAATTTATTCCCTTTTCGATAT
GAAATCTTCGTTCCGCCAAATCACGGTGCACCGCGATACAATCCCTTTGA
CGGCATTCGTGACATCTTCCGGGCTTTTCGAGTGGTTGAATATGCCTCAA
GGCAGTTCGGCTGCCCCTGGGTGGTTTTGCAAATACTTGGATGATTTGAT
CGTCTTTGATGACACCCCTGCTACTCATGTTGGTACCATGCGCGCATGCT
TTGAACGCTTGCGTACGCACAACTTGAAACTCACGCCTCCGAAAGCTACT
ATTGGCGCTACTGAAGCGGACTTCCTGGGACACACCATCTCCCCTGACGG
CGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCTCACCAAAATGCCTATGC
CTAGGGATGTCAAGCAACTACGCCGCCTTCTCGGTGGTCTCAGCTACTAC
CGTAAGTTCCTCCCCACCATGGCTAAACGCATTCGACCTCTGACTACTCT
ACTCAAGAAGCAGAAGAAGTTTACCTTCACCCCTTCCATGGAGCAAGCCG
TTCGCGTTTTACTAGCTGAGTTGGCCAATCCCCCTGTTTTGGTTTATCCA
GATTAG
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