EsuBft927_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft927_10a-0001
Unique Name	EsuBft927_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:510444..512448 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G2U2
ProteomeId	EsuBft927_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	115
Hectar predicted targeting category	other localisation
Evalue	3.73e-67
EggNOG OGs	2D4WP@1\|root,2SWJ7@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Ubiquitin associated domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft927_10a	EsuBft927_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 510444..512448 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_10a-0001-exon	EsuBft927_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 510444..510908 +
EsuBft927_10a-0001-exon	agat-exon-37125	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 511759..512448 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_10a-0001-cds	EsuBft927_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 510444..510908 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_10a-0001	EsuBft927_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 510444..512448 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:510444..512448+
coding sequence from alignment at Scaffold_245:510444..512448+

spliced messenger RNA

>EsuBft927_10a-0001 ID=EsuBft927_10a-0001|Name=EsuBft927_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_245:510444..512448+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCAGAGAACACCCCCTCCGCAGCCTCCTCGGCGCCTGCTCCTA
CATATTCAACTCCGCCCTCGAGATGACCGCGGGGCCCCCCGACGGCTCGT
CGGCTCCCGCTAGCCCTACGTCGCCGTTCAAGGGCGGGGTTGTTGGAGAG
GAGGGCCAGAATTATGGGGGGGTCACCGCCGCTATCTGTGGAGACAACCG
GGCGACGGCGGCGGCGGGTTCGGGCGGTCAGCAAGGCTGGGAGGCGTTCA
ACCGGTCGATGGACGGCCGCGACGAGGAGGTGCGGAAGGCGGCGGCGGGG
GCGGCGGCCGGCGGGGAGAAGGTCAAGGAGCGGGAGCTCCCGGCCCCGAT
GCTGGAGGTGCTGAAGGTGGCGCTGTCGCTACTGCGGCGGCTATCGAACC
GGAACCTGACCGCGGCGGGGCCGTTTGCGTCCACGATGCAGATGTGGCCG
TCGGGGCATCCCCAGCGGCGGGACTGGGAGGCCGCCCTGGCCATGGCCGG
CGAGCCCCCCCCGTCCATCGACGCGGCGTCGTCGTCGTCGTCATCGTCTC
GTTCGGCGTTGGCACCGGCGTCAGCGTCCGCAGCATCGGGGTCCGCAGGT
TCGGGTGCGGCGGCGGCGTCGCGAGGATGGTCAACGTCGGCAGCAGCAGC
GGCTATGGAGGCGGAGATGGCGGCAATCCGCCGGCACGGTGGTAGCGGTG
GTAGCGGTGGTGGTGCAGGTCGCGGCGGCGGCACCGGCGGTGGCGGCGGC
GGCGGCGGTGTGGAGGAAGAAAAGGGCGAGACCGACCCCGAGCGAAACGG
CGGCGGCGGCGGCGGCGGAGACGGTGACAATAACGACGACGACGATGACG
GTAGCCCACCGGAGGCCGGAGGCGCAGCAGCGGCGGCGGCGGCGGCGGCG
GCCGCTGATACCACCGCCGGGAGGAGCGGCACAATGTCGCCGCCGCAACC
GCAGGCACCGGGGACTCCGACCCCGATGGCCGTGGCAACGCCGATGGCTG
TTGAGCCGCCGTCGACCCCCGACGCGCCTTCGCGAGCAGCGGGATCGAGA
GGCGGTAGTGGGGCCGCCGCTACTGCTGATTCCACGCTTGCCGAAGGCAG
AAATCAGTCGTCGAAGGTGCGGCAGGGACTTGTGATTAAGAAAAAAAATG
CGTAG

protein sequence of EsuBft927_10a-0001

>EsuBft927_10 ID=EsuBft927_10|Name=EsuBft927_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=384bp
MERREHPLRSLLGACSYIFNSALEMTAGPPDGSSAPASPTSPFKGGVVGE
EGQNYGGVTAAICGDNRATAAAGSGGQQGWEAFNRSMDGRDEEVRKAAAG
AAAGGEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWP
SGHPQRRDWEAALAMAGEPPPSIDAASSSSSSSRSALAPASASAASGSAG
SGAAAASRGWSTSAAAAAMEAEMAAIRRHGGSGGSGGGAGRGGGTGGGGG
GGGVEEEKGETDPERNGGGGGGGDGDNNDDDDDGSPPEAGGAAAAAAAAA
AADTTAGRSGTMSPPQPQAPGTPTPMAVATPMAVEPPSTPDAPSRAAGSR
GGSGAAATADSTLAEGRNQSSKVRQGLVIKKKNA

mRNA from alignment at Scaffold_245:510444..512448+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft927_10a-0001 ID=EsuBft927_10a-0001|Name=EsuBft927_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2005bp|location=Sequence derived from alignment at Scaffold_245:510444..512448+ (Ectocarpus subulatus male Bft15b)
ATGGAGCGCAGAGAACACCCCCTCCGCAGCCTCCTCGGCGCCTGCTCCTA
CATATTCAACTCCGCCCTCGAGATGACCGCGGGGCCCCCCGACGGCTCGT
CGGCTCCCGCTAGCCCTACGTCGCCGTTCAAGGGCGGGGTTGTTGGAGAG
GAGGGCCAGAATTATGGGGGGGTCACCGCCGCTATCTGTGGAGACAACCG
GGCGACGGCGGCGGCGGGTTCGGGCGGTCAGCAAGGCTGGGAGGCGTTCA
ACCGGTCGATGGACGGCCGCGACGAGGAGGTGCGGAAGGCGGCGGCGGGG
GCGGCGGCCGGCGGGGAGAAGGTCAAGGAGCGGGAGCTCCCGGCCCCGAT
GCTGGAGGTGCTGAAGGTGGCGCTGTCGCTACTGCGGCGGCTATCGAACC
GGAACCTGACCGCGGCGGGGCCGTTTGCGTCCACGATGCAGATGTGGCCG
TCGGGGCATCCCCAGGTACTAATTTTGCGCTGTTCTTCCCCATTGGAGAC
ACAAGATATCACACCCCGTGGGGTGATTTTTCAAAGCTCGATTACTCCAC
GGCAGAGAGAGAGGCTGGCGGCGTTAGCACCGTCTCGTCGGCAGAAAGAG
TGGTGGCGTCGAGAATGGCGGTGTTGGAACCGAAAACGTATCGCTCGACG
CGTTATACATCCTAGCTCGCCGTGGAACTATGGAGCCTTTAGTATGGGTC
CAGGGGATGTGCTATTCCTTACGTCAGCTATGTACGGCGCGCTGCCGAGA
ATCGCTGCTTTCCCGGAGGCCTTTCTAGTGTGGTGGCGCGGCTGCTTCGC
AACACAACACCAAACAGTCTTGCTGCACGTTCTGTAAAAGTTCAAATGAA
AGTAAAAATGTAAGAATATAGAATAAAGCAAAGCAAGAGAACAACAGGAA
CGGTGTGGACTGCCGCCAAGAACACAGACGCGACGAAAACGTGCACCACA
CACGTGTCACACCTTTAGGGTCTGCGGGAAAGTGTTCGTATCAACTCATC
TTGCCGCCACGACAGAAGAAATACTATCTATCGGGGGGGTGACGCTACGT
GTTCCTTCGCGGCGGGGGGGTGACACTGTGTGTCGACGTCCCCACACGAA
TGGGAGCAGGAGGTTCTTGTTTTCTTCATCTCTACTGTGGCGGCTATAAT
AGTAGTGTTGATGATGTACTTATTTTCGTTCATCAAAGGCGGGTTCAATT
TTCAGTACGAATCTGGACGTAGGCGTGTACTTGTCGCACGCCTCTTCAAT
CTTCCATGCAAGCACACAGCAACGCCGACTGCCAATCATCTGACATTACC
CCCTTTGGAACACAGCGGCGGGACTGGGAGGCCGCCCTGGCCATGGCCGG
CGAGCCCCCCCCGTCCATCGACGCGGCGTCGTCGTCGTCGTCATCGTCTC
GTTCGGCGTTGGCACCGGCGTCAGCGTCCGCAGCATCGGGGTCCGCAGGT
TCGGGTGCGGCGGCGGCGTCGCGAGGATGGTCAACGTCGGCAGCAGCAGC
GGCTATGGAGGCGGAGATGGCGGCAATCCGCCGGCACGGTGGTAGCGGTG
GTAGCGGTGGTGGTGCAGGTCGCGGCGGCGGCACCGGCGGTGGCGGCGGC
GGCGGCGGTGTGGAGGAAGAAAAGGGCGAGACCGACCCCGAGCGAAACGG
CGGCGGCGGCGGCGGCGGAGACGGTGACAATAACGACGACGACGATGACG
GTAGCCCACCGGAGGCCGGAGGCGCAGCAGCGGCGGCGGCGGCGGCGGCG
GCCGCTGATACCACCGCCGGGAGGAGCGGCACAATGTCGCCGCCGCAACC
GCAGGCACCGGGGACTCCGACCCCGATGGCCGTGGCAACGCCGATGGCTG
TTGAGCCGCCGTCGACCCCCGACGCGCCTTCGCGAGCAGCGGGATCGAGA
GGCGGTAGTGGGGCCGCCGCTACTGCTGATTCCACGCTTGCCGAAGGCAG
AAATCAGTCGTCGAAGGTGCGGCAGGGACTTGTGATTAAGAAAAAAAATG
CGTAG

Coding sequence (CDS) from alignment at Scaffold_245:510444..512448+

>EsuBft927_10a-0001 ID=EsuBft927_10a-0001|Name=EsuBft927_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1155bp|location=Sequence derived from alignment at Scaffold_245:510444..512448+ (Ectocarpus subulatus male Bft15b)
ATGGAGCGCAGAGAACACCCCCTCCGCAGCCTCCTCGGCGCCTGCTCCTA
CATATTCAACTCCGCCCTCGAGATGACCGCGGGGCCCCCCGACGGCTCGT
CGGCTCCCGCTAGCCCTACGTCGCCGTTCAAGGGCGGGGTTGTTGGAGAG
GAGGGCCAGAATTATGGGGGGGTCACCGCCGCTATCTGTGGAGACAACCG
GGCGACGGCGGCGGCGGGTTCGGGCGGTCAGCAAGGCTGGGAGGCGTTCA
ACCGGTCGATGGACGGCCGCGACGAGGAGGTGCGGAAGGCGGCGGCGGGG
GCGGCGGCCGGCGGGGAGAAGGTCAAGGAGCGGGAGCTCCCGGCCCCGAT
GCTGGAGGTGCTGAAGGTGGCGCTGTCGCTACTGCGGCGGCTATCGAACC
GGAACCTGACCGCGGCGGGGCCGTTTGCGTCCACGATGCAGATGTGGCCG
TCGGGGCATCCCCAGCGGCGGGACTGGGAGGCCGCCCTGGCCATGGCCGG
CGAGCCCCCCCCGTCCATCGACGCGGCGTCGTCGTCGTCGTCATCGTCTC
GTTCGGCGTTGGCACCGGCGTCAGCGTCCGCAGCATCGGGGTCCGCAGGT
TCGGGTGCGGCGGCGGCGTCGCGAGGATGGTCAACGTCGGCAGCAGCAGC
GGCTATGGAGGCGGAGATGGCGGCAATCCGCCGGCACGGTGGTAGCGGTG
GTAGCGGTGGTGGTGCAGGTCGCGGCGGCGGCACCGGCGGTGGCGGCGGC
GGCGGCGGTGTGGAGGAAGAAAAGGGCGAGACCGACCCCGAGCGAAACGG
CGGCGGCGGCGGCGGCGGAGACGGTGACAATAACGACGACGACGATGACG
GTAGCCCACCGGAGGCCGGAGGCGCAGCAGCGGCGGCGGCGGCGGCGGCG
GCCGCTGATACCACCGCCGGGAGGAGCGGCACAATGTCGCCGCCGCAACC
GCAGGCACCGGGGACTCCGACCCCGATGGCCGTGGCAACGCCGATGGCTG
TTGAGCCGCCGTCGACCCCCGACGCGCCTTCGCGAGCAGCGGGATCGAGA
GGCGGTAGTGGGGCCGCCGCTACTGCTGATTCCACGCTTGCCGAAGGCAG
AAATCAGTCGTCGAAGGTGCGGCAGGGACTTGTGATTAAGAAAAAAAATG
CGTAG