EsuBft2017_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2017_5a-0001
Unique NameEsuBft2017_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:844660..848779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G934
ProteomeIdEsuBft2017_5
Protein domainsIPR023215
Protein domainsPF13242
Protein domainsPTHR19288
Protein domainsIPR006349
Protein domainsIPR023214
Protein domainsIPR006357
Ownerapollo_admin@sb-roscoff.fr
Notephosphoglycolate phosphatase 2 os:arabidopsis thaliana gn:pglp2 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1596
Hectar predicted targeting categorymitochondrion
Evalue4.29e-220
EggNOG OGsCOG0647@1|root,KOG2882@2759|Eukaryota
Ec32 ortholog descriptionHAD-superfamily hydrolase, subfamily IIA
Ec32 orthologEc-15_002020.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
EC3.1.3.18,3.1.3.41,3.1.3.48
Descriptionphosphoglycolate phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0031256
GO0010564
GO0031253
GO0046872
GO0051302
GO0005773
GO0030027
GO0004721
GO0005515
GO0005856
GO0006470
GO0043169
GO0033043
GO0009570
EC3.1.3.18
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_5aEsuBft2017_5aEctocarpus subulatus male Bft15bgeneScaffold_242 844660..848779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_5a-0001EsuBft2017_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 844694..848396 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_5a-0001-exonEsuBft2017_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 844660..844983 +
EsuBft2017_5a-0001-exonagat-exon-43762Ectocarpus subulatus male Bft15bexonScaffold_242 845919..845986 +
EsuBft2017_5a-0001-exonagat-exon-43759Ectocarpus subulatus male Bft15bexonScaffold_242 846346..846504 +
EsuBft2017_5a-0001-exonagat-exon-43758Ectocarpus subulatus male Bft15bexonScaffold_242 846814..846980 +
EsuBft2017_5a-0001-exonagat-exon-43761Ectocarpus subulatus male Bft15bexonScaffold_242 847304..847486 +
EsuBft2017_5a-0001-exonagat-exon-43760Ectocarpus subulatus male Bft15bexonScaffold_242 848085..848779 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_5a-0001-exonagat-five_prime_utr-4983Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 844660..844693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_5a-0001-cdsEsuBft2017_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 844694..844983 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_5a-0001-exonagat-three_prime_utr-7701Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 848397..848779 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2017_5a-0001 ID=EsuBft2017_5a-0001|Name=EsuBft2017_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1596bp|location=Sequence derived from alignment at Scaffold_242:844660..848779+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGACGCATGTGTCATGATCACAGGCACAGAGCATGTCGTACGCGTCAC
CCGTGCGATCACGCTGGTCAGCCATAGTATCGTTCAGAACACTGTCGCGT
CTTGCTACCCTTAGCACCGGAATCGTTCGTTGCGGCGCGTGGCTTGCAGT
GGGTGCTAGAGGTCGTACGAGCAATATCTCCGCCTTTGTCGGCAGCAACT
CGGCCGTCGCCCGACCACGCAAGACCAGCATCAACAGCATGGCTGCAAGC
CCTCTCATGGAAGGTGCAGGGAATCACATCCAGCGGGTCGATACTCTGGA
AACCGAGAGAGCGCTTGTCAGCAAGTACGAAGCCTTCGTGTTCGATTGCG
ATGGCGTTTTATGGGGAGGCAGCCACGCCATCGAAGGTTCACTGGACACG
GTGAAGGCGCTACGGCGCGCCGGCAAGCGCACCTTCTTCGTGACGAATAA
CTCGAGCAAGAGCCGAAGACAGTACTGTGTCAAGCTCGAGGGCTTCGGGG
TGCATGGCGTTGGTGTCGAAGACATCGTCACGTCTGGTTCGGCGATCGCT
GCCTACGTTAAGCTCTCTCATCCGGATGTACGGACCGTGTACATGATCGG
GGAGGAGGGACTCGAAGAGGAGCTTGAGATGGTTGGGCTGAGGGTCGTGA
AGGAGGACGCGAGGCCAGCTCCGGGTATGACGGAGGACGAGTTTCGTGAG
AATGTCACGGACCCAGAGGTTGGGGCTGTTGTGGTGGGACTGGACACGTC
CTTCGGGTTTCGCCAGCTGTGTGTCGCCTCCAGCTACATCCAGAGCGGGG
CTCACTTCTTGGGGACAAACCCGGACGTCGCCGACCGAGTAGGAAGCCTG
CTCATGCCTGGAACAGGGCCTATGTTGGCCAGCATACAAACAGCCTCAGG
GGTGGCACCAGTGGTCGTCGGCAAGCCCAACCCTCTCCTCATCCGCCAAC
TGATGAACCAGAATGGCCTCGCAGCATCCAAGACGCTCATGGTCGGCGAC
AGGTTGGACACGGACATAATGTTCGGCAACGCCGGAGGGGTTTCCAGCGC
GCTGGTGTTGACAGGGGTCAGCGAGATGTCCGATGTCGTGGGGCTGCAGG
CCGGCGGCGACAAAACGCCCACATATCTCTTGGAGAGGTTGGGAGCTTTG
TTGCCCGCAGCGACCGAGGCAGCAGCGGCGGCGACAGAAACTTCGGCCGT
CGCGAAGATGTGAACGAAGGATTTCGAGAGTTTTTTTGGTTTGTGCTTCG
CCATGTGGCTGGGGGGTGCGGACGAGTATCACTCTCTGTCAGACCGCGGC
ATTGCCATGTTTCTTGTCGATTGAGGGCATACGGCACACCCAGATGATGA
GCACACGACAACGATACCACGATACCACGGCTTGATAGTTTTTGTTGCTC
CTGGCTAGAGAATTTTTTCAGGTTCTTGTACGAAAGTGCCGCTGACGCCC
TGTGAAAAGTTGATACAATTGCCTCTGGCCATTAGAGCGTTGGATCCCTC
GGCTTCTTGTTACAAACGCTCTCCTGACTTGGCGGTTGTGGGCTATAAGA
GCCGTGCGTGTGCACGGATTGCGGCTACTCTTTAGGGAAGAGGCTA
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protein sequence of EsuBft2017_5a-0001

>EsuBft2017_5 ID=EsuBft2017_5|Name=EsuBft2017_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=392bp
MSYASPVRSRWSAIVSFRTLSRLATLSTGIVRCGAWLAVGARGRTSNISA
FVGSNSAVARPRKTSINSMAASPLMEGAGNHIQRVDTLETERALVSKYEA
FVFDCDGVLWGGSHAIEGSLDTVKALRRAGKRTFFVTNNSSKSRRQYCVK
LEGFGVHGVGVEDIVTSGSAIAAYVKLSHPDVRTVYMIGEEGLEEELEMV
GLRVVKEDARPAPGMTEDEFRENVTDPEVGAVVVGLDTSFGFRQLCVASS
YIQSGAHFLGTNPDVADRVGSLLMPGTGPMLASIQTASGVAPVVVGKPNP
LLIRQLMNQNGLAASKTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSD
VVGLQAGGDKTPTYLLERLGALLPAATEAAAAATETSAVAKM
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mRNA from alignment at Scaffold_242:844660..848779+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2017_5a-0001 ID=EsuBft2017_5a-0001|Name=EsuBft2017_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4120bp|location=Sequence derived from alignment at Scaffold_242:844660..848779+ (Ectocarpus subulatus male Bft15b)
TGCGACGCATGTGTCATGATCACAGGCACAGAGCATGTCGTACGCGTCAC
CCGTGCGATCACGCTGGTCAGCCATAGTATCGTTCAGAACACTGTCGCGT
CTTGCTACCCTTAGCACCGGAATCGTTCGTTGCGGCGCGTGGCTTGCAGT
GGGTGCTAGAGGTCGTACGAGCAATATCTCCGCCTTTGTCGGCAGCAACT
CGGCCGTCGCCCGACCACGCAAGACCAGCATCAACAGCATGGCTGCAAGC
CCTCTCATGGAAGGTGCAGGGAATCACATCCAGCGGGTCGATACTCTGGA
AACCGAGAGAGCGCTTGTCAGCAAGTAAGGGAAACACCTTTGCTTGTGTA
CCAAACAGTCGGAGGATTGAAGTAGGTCCGCAACGTATGCGTCGGGTCTC
GCCGTAGGCAATGCTGCTGCCACGTAGGGAGAGCAGTGACTGCCGCAGTG
CCCAAGTAGAATATTTTGCACCATCAAACCCTAGGACATATGAAGTACAG
CATGCCGTAATCACGTCTATATGTGCCCGTTATACCTCGAACGCAACGGC
CGTGCATCATTGTGTAGGGTTTCGCGAAGGCGATCTACTGCTGTACTGCA
TCATTACACTGCAGTTGTTTTCGAATCGATCGGTCGTTCGTCGCCGTCGG
ATGGTGTTGGGAACGGTACAGCAGTAGTAGGGTCGAGTCCTTCGGGCGGC
CTTGGGCCACCTTGGCCGATCACGCCGCCGTCGCACGCCGTTACTGAGAC
AAGACGTACAACGTAGCAGAGTGGTGTGAGCAGCCGCTGCAGACCCGGAA
AAGATATCTGTAGGTCTGGGAAGGCGGAAGATAACGGTTTCGACCCAGAA
TTACGGAGTTTTCGGACCAAACTGCTGCCTTCTACAGCACAGCCCCGCAG
CAGTACGCCCGGACGCGCCAGCACGCACGTCACTGCTGCATGATCCTTTT
TACGTGCATGGCAGTTCAGGTCGGGACTCCGCACATGCGAATGGCCCTTC
AAAGCTCCGGCAGGGTTGGCTTGTCTTCTAGAGTCGTGAAATGTTTGCAA
TGTGTGTCCATGAGAAGATTGGTGCTGCTTCATCACGTGGTGCGTGACAG
TTGAGAACGCCATCGACGGCAGCAGAAGACAACAGTTATTTGTTCAAAAA
TCGCTGTCAATTGGGCTCTGTGTTAGCTGCATGCACACGTTTTGGCACCT
CGCTAAAACCTTGTCGGCCATGGTCGACCTCGTTACCTCAACGTCGCATT
GAATGAAAGGTACGAAGCCTTCGTGTTCGATTGCGATGGCGTTTTATGGG
GAGGCAGCCACGCCATCGAAGGTTCACGTGAGTACTTGCGCGTCAAGCAC
AAGGCATCGCTTCCCCTCTACCACGGTCACACGAGATGGAAGCTACAAGC
CTGATGCACGACAAGTTAGTGTGTGTGTCTAGGACATCGGAAAAATCAGC
ACTTAGGACTTGGAATACGACGAGCTTGGAGGTGGCACATGGGAGCTCCT
CAGGTCCACCGTGATACTTGGGCAAATTTAGTTCAAAGAAAAACACAGCA
GTAATGTGAAAGAGGGAACTATCCTACCTTGAGAGCATCACCCATCCCAA
CACATGCTCGTATCTTTCCGACTCTTCACTGTCACATCCCGTCATCGCTG
CCGTTGTCATGATGTGGTAATGGCGTGAACCAATAGTGGACACGGTGAAG
GCGCTACGGCGCGCCGGCAAGCGCACCTTCTTCGTGACGAATAACTCGAG
CAAGAGCCGAAGACAGTACTGTGTCAAGCTCGAGGGCTTCGGGGTGCATG
GCGTTGGTGTCGAAGACATCGTCACGTCTGGTTCGGCGATCGCTGGTGAG
AGAGCAGCGTGGGTTGATCTACGAACAGTCGCTGGTGGTGTCGCCTACAA
TCAATGCCTGTGTTGGCTCGGGCCCCAAGAATTTTTTTGTAGCGTAGGCA
ACAGCATGCGTAGTCACGTCCTGATGTTCACGTGAGAAGCTCGCACCTAA
CCGACGCAACCTCTGTCCTCATTTGGAGCCTTCTCGTGCTCAAGCGTTTT
CGCAACTTATACTGTAGCAAACACTATTCCCTCGCATTTTCTCGCATGCA
AACAAGGCTCTCATTTCCTCCTCTTGATCGTGTTTGTTGCGCGTTATTGT
TCAGCCTACGTTAAGCTCTCTCATCCGGATGTACGGACCGTGTACATGAT
CGGGGAGGAGGGACTCGAAGAGGAGCTTGAGATGGTTGGGCTGAGGGTCG
TGAAGGAGGACGCGAGGCCAGCTCCGGGTATGACGGAGGACGAGTTTCGT
GAGAATGTCACGGACCCAGAGGTAGGGCATGTTGCAAGTGTGGTGCCATG
TTGAGCGTGGTGCTGCATTGGTTGTGGTGGTTGTGCTGTAGGTGTTGGCA
TCGGTGGTGAATGGTGTTTATAGAGATGAGGCCGCTGGTGGTAGTGTTGG
CTGGTATACCGGTGTTTGCATGAGGTGCTGCTCTTAACTCCGACCGCCAA
CTCCCCCCAGAAAACGGAGTAACCAGAGTACGCTCTCGGAAACGAACCCA
TGCTTATCGTGTTCAGCAAACTAGCATTTTTTTTAGCCCTGCTTATCTCT
CCCAACCCACCCATATTGTCGGCGCTATTCGTCGGCCAAACCAGGTTGGG
GCTGTTGTGGTGGGACTGGACACGTCCTTCGGGTTTCGCCAGCTGTGTGT
CGCCTCCAGCTACATCCAGAGCGGGGCTCACTTCTTGGGGACAAACCCGG
ACGTCGCCGACCGAGTAGGAAGCCTGCTCATGCCTGGAACAGGGCCTATG
TTGGCCAGCATACAAACAGCCTCAGGGGTGAGGCGACCCCTGCCTGCCCA
TCTGCAAGACTGTTGGTTGGGGGACGAGGAAGGGGATGGCATTTCGCGTG
ATGGAGTTACGACCCATGGGCTAGTTGGTCTCCCGTCTCGGCATGCATCG
TGTTGCCCGAATATTTGCATTTTCAGAAAAGCGTCCCTGCCGGTGTGAAG
TGTAGCTCTGCCGTCAATTTTCGCTCTTCGATGAGTTTACTCTGTCGGCA
ACCTCTCCACCCACGCCTCTCGCGCACCTCGAACTATTTTCCTACTGATG
TTCCCGTCGCGTTTGGCACAAGCGTTACGCAACTCTAGCCGGCGCCTGTT
GCTACTATCATTGCGAGTATCCCCCTCGTGCTAGCAGAACCCCAAACAAG
AACCACGCCGGCCTGTTGTACTTCTCTAGGTACCCGAGCACTCCCCGTGA
GAAAGGCGTGCACGCGTACATATGCGTGCAAGTCCGCCCCCCCCCCCCCG
TCGGGGGACCCCGAGGACTAGAAGGCCGATGTTTTTCCTTGAGCCGTCCG
ATTTTCTTTGTCGATACGTCGATGCCAATTCGAATGAAAAAAACACTCGC
ACACGCACGCTTACACGCGCTACAGGTGGCACCAGTGGTCGTCGGCAAGC
CCAACCCTCTCCTCATCCGCCAACTGATGAACCAGAATGGCCTCGCAGCA
TCCAAGACGCTCATGGTCGGCGACAGGTTGGACACGGACATAATGTTCGG
CAACGCCGGAGGGGTTTCCAGCGCGCTGGTGTTGACAGGGGTCAGCGAGA
TGTCCGATGTCGTGGGGCTGCAGGCCGGCGGCGACAAAACGCCCACATAT
CTCTTGGAGAGGTTGGGAGCTTTGTTGCCCGCAGCGACCGAGGCAGCAGC
GGCGGCGACAGAAACTTCGGCCGTCGCGAAGATGTGAACGAAGGATTTCG
AGAGTTTTTTTGGTTTGTGCTTCGCCATGTGGCTGGGGGGTGCGGACGAG
TATCACTCTCTGTCAGACCGCGGCATTGCCATGTTTCTTGTCGATTGAGG
GCATACGGCACACCCAGATGATGAGCACACGACAACGATACCACGATACC
ACGGCTTGATAGTTTTTGTTGCTCCTGGCTAGAGAATTTTTTCAGGTTCT
TGTACGAAAGTGCCGCTGACGCCCTGTGAAAAGTTGATACAATTGCCTCT
GGCCATTAGAGCGTTGGATCCCTCGGCTTCTTGTTACAAACGCTCTCCTG
ACTTGGCGGTTGTGGGCTATAAGAGCCGTGCGTGTGCACGGATTGCGGCT
ACTCTTTAGGGAAGAGGCTA
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Coding sequence (CDS) from alignment at Scaffold_242:844660..848779+

>EsuBft2017_5a-0001 ID=EsuBft2017_5a-0001|Name=EsuBft2017_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1179bp|location=Sequence derived from alignment at Scaffold_242:844660..848779+ (Ectocarpus subulatus male Bft15b)
ATGTCGTACGCGTCACCCGTGCGATCACGCTGGTCAGCCATAGTATCGTT
CAGAACACTGTCGCGTCTTGCTACCCTTAGCACCGGAATCGTTCGTTGCG
GCGCGTGGCTTGCAGTGGGTGCTAGAGGTCGTACGAGCAATATCTCCGCC
TTTGTCGGCAGCAACTCGGCCGTCGCCCGACCACGCAAGACCAGCATCAA
CAGCATGGCTGCAAGCCCTCTCATGGAAGGTGCAGGGAATCACATCCAGC
GGGTCGATACTCTGGAAACCGAGAGAGCGCTTGTCAGCAAGTACGAAGCC
TTCGTGTTCGATTGCGATGGCGTTTTATGGGGAGGCAGCCACGCCATCGA
AGGTTCACTGGACACGGTGAAGGCGCTACGGCGCGCCGGCAAGCGCACCT
TCTTCGTGACGAATAACTCGAGCAAGAGCCGAAGACAGTACTGTGTCAAG
CTCGAGGGCTTCGGGGTGCATGGCGTTGGTGTCGAAGACATCGTCACGTC
TGGTTCGGCGATCGCTGCCTACGTTAAGCTCTCTCATCCGGATGTACGGA
CCGTGTACATGATCGGGGAGGAGGGACTCGAAGAGGAGCTTGAGATGGTT
GGGCTGAGGGTCGTGAAGGAGGACGCGAGGCCAGCTCCGGGTATGACGGA
GGACGAGTTTCGTGAGAATGTCACGGACCCAGAGGTTGGGGCTGTTGTGG
TGGGACTGGACACGTCCTTCGGGTTTCGCCAGCTGTGTGTCGCCTCCAGC
TACATCCAGAGCGGGGCTCACTTCTTGGGGACAAACCCGGACGTCGCCGA
CCGAGTAGGAAGCCTGCTCATGCCTGGAACAGGGCCTATGTTGGCCAGCA
TACAAACAGCCTCAGGGGTGGCACCAGTGGTCGTCGGCAAGCCCAACCCT
CTCCTCATCCGCCAACTGATGAACCAGAATGGCCTCGCAGCATCCAAGAC
GCTCATGGTCGGCGACAGGTTGGACACGGACATAATGTTCGGCAACGCCG
GAGGGGTTTCCAGCGCGCTGGTGTTGACAGGGGTCAGCGAGATGTCCGAT
GTCGTGGGGCTGCAGGCCGGCGGCGACAAAACGCCCACATATCTCTTGGA
GAGGTTGGGAGCTTTGTTGCCCGCAGCGACCGAGGCAGCAGCGGCGGCGA
CAGAAACTTCGGCCGTCGCGAAGATGTGA
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