EsuBft509_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft509_13a-0001
Unique NameEsuBft509_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:257013..257442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft509_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length43
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft509_13aEsuBft509_13aEctocarpus subulatus male Bft15bgeneScaffold_235 257013..257442 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_13a-0001-exonEsuBft509_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 257013..257442 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_13a-0001-exonagat-three_prime_utr-17417Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 257013..257241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_13a-0001-cdsEsuBft509_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 257242..257442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft509_13a-0001EsuBft509_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 257242..257442 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft509_13a-0001 ID=EsuBft509_13a-0001|Name=EsuBft509_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=430bp|location=Sequence derived from alignment at Scaffold_235:257013..257442- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATGAAATTACACAAAACTGGGAGACCACTCCCGTGTGCCGCACA
ATTTGACACAGATGCATGCATATGCATACCAAACTCAATTACTTACCAAA
TCATATTCCTCGCGTTAAATGCATACCAAACTGGAAATACACGTGTAAAA
TGGATGGAGATCCACAACCAACAGGGTGCCACACATAAAACACCCAACTA
ACTAACAGCCCAACACTTTTCGTCTACACCTTCCCAACATAACATATATA
AGACACACAACACAGCTACCAAACTGTCTTGTTGAGCCTGTTATCCGCAG
GGGAGATGTCCATATATGCTGTCTGGGAAATCGTGGACACACAACAGGTA
GTTTTCTTTGACGCTATGATTCCATTGCTAATCTGTCTTTGACTCTTTTC
TCTGACGGAAATGGACTCGTTGTGTTGTAT
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protein sequence of EsuBft509_13a-0001

>EsuBft509_13 ID=EsuBft509_13|Name=EsuBft509_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=66bp
MGMKLHKTGRPLPCAAQFDTDACICIPNSITYQIIFLALNAYQTGNTRVK
WMEIHNQQGATHKTPN
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mRNA from alignment at Scaffold_235:257013..257442-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft509_13a-0001 ID=EsuBft509_13a-0001|Name=EsuBft509_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=430bp|location=Sequence derived from alignment at Scaffold_235:257013..257442- (Ectocarpus subulatus male Bft15b)
ATGGGCATGAAATTACACAAAACTGGGAGACCACTCCCGTGTGCCGCACA
ATTTGACACAGATGCATGCATATGCATACCAAACTCAATTACTTACCAAA
TCATATTCCTCGCGTTAAATGCATACCAAACTGGAAATACACGTGTAAAA
TGGATGGAGATCCACAACCAACAGGGTGCCACACATAAAACACCCAACTA
ACTAACAGCCCAACACTTTTCGTCTACACCTTCCCAACATAACATATATA
AGACACACAACACAGCTACCAAACTGTCTTGTTGAGCCTGTTATCCGCAG
GGGAGATGTCCATATATGCTGTCTGGGAAATCGTGGACACACAACAGGTA
GTTTTCTTTGACGCTATGATTCCATTGCTAATCTGTCTTTGACTCTTTTC
TCTGACGGAAATGGACTCGTTGTGTTGTAT
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Coding sequence (CDS) from alignment at Scaffold_235:257013..257442-

>EsuBft509_13a-0001 ID=EsuBft509_13a-0001|Name=EsuBft509_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=201bp|location=Sequence derived from alignment at Scaffold_235:257013..257442- (Ectocarpus subulatus male Bft15b)
ATGGGCATGAAATTACACAAAACTGGGAGACCACTCCCGTGTGCCGCACA
ATTTGACACAGATGCATGCATATGCATACCAAACTCAATTACTTACCAAA
TCATATTCCTCGCGTTAAATGCATACCAAACTGGAAATACACGTGTAAAA
TGGATGGAGATCCACAACCAACAGGGTGCCACACATAAAACACCCAACTA
A
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