EsuBft954_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_4a-0001
Unique NameEsuBft954_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:234259..235369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft954_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length81
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_4aEsuBft954_4aEctocarpus subulatus male Bft15bgeneScaffold_235 234259..235369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_4a-0001EsuBft954_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 234259..234765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_4a-0001-exonEsuBft954_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 234259..234295 +
EsuBft954_4a-0001-exonagat-exon-47318Ectocarpus subulatus male Bft15bexonScaffold_235 234500..234988 +
EsuBft954_4a-0001-exonagat-exon-47319Ectocarpus subulatus male Bft15bexonScaffold_235 235086..235369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_4a-0001-cdsEsuBft954_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 234259..234295 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_4a-0001-exonagat-three_prime_utr-23446Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 234766..234988 +
EsuBft954_4a-0001-exonagat-three_prime_utr-23447Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 235086..235369 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_4a-0001 ID=EsuBft954_4a-0001|Name=EsuBft954_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=810bp|location=Sequence derived from alignment at Scaffold_235:234259..235369+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCAACATGGGACCTCCGTCAGGTTACGGAAGGTGGAGGCCTATC
CAATCTTAAGAGCAAGCTCGAGGAGGAGGATTACTACAGACAGCAGGGCG
AGGCGAGGAGGGAGGCATCGGCCCGTAAAGCTCGCGCGACTGCCGAAGAC
GAACGGCGAATCACAAAGTCCGCGGGGAATCACCCCGTTGATTGTCGGCG
CAGGAGTCACGGCGGGAATNGGAAAGCCCTGGGTATGGGAGACCGCAGGG
CGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGGACGG
TGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAAGTGTCG
TTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAACCG
CGATAGGCGATCTGCGCATCGTCGGCTTCTAGTGATGTGTAGTGTACGGG
GGTGGTGAAGGCAATTTTGCGTGGTCGGCACATGGGTTCGCACGACGTCA
AAGGGCTCAGTGGGCAAAGTCTACGGGCGCGTGCTTCGCTTCCGTTGGAT
GCAGCCATCCGTCAAATACGACGACCCTGGGATGCAAGATATCAGGCGGA
CTAACAGAAGCCTGACGCTGACCAGCCGGCTAGAGCGCGCGTTTTCTCCC
CTGTATTTTCTTACCCAGTTGCGCAGGGAAGTGGACGAGGGAGATTATTT
TCCCTTCGGCCGCGCTGGGTGTCCGTTGTTTTCTGGCATGGTACTTTGTT
AGTCGCAAACTGCCTGAAAGGTACGAGGATGCTGTGTGCGTTCCGGGCCT
GTGTCGTACT
back to top

protein sequence of EsuBft954_4a-0001

>EsuBft954_4 ID=EsuBft954_4|Name=EsuBft954_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MQPTWDLRQVTEGGGLSNLKSKLEEEDYYRQQGEARREASARKARATAED
ERRITKSAGNHPVDCRRRSHGGNXKALGMGDRRARRTAPYHLGRLGGRGR
back to top

mRNA from alignment at Scaffold_235:234259..235369+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_4a-0001 ID=EsuBft954_4a-0001|Name=EsuBft954_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1111bp|location=Sequence derived from alignment at Scaffold_235:234259..235369+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCAACATGGGACCTCCGTCAGGTTACGGAAGGTACGCTAACCCC
GCGTACTCCAGTGGTCGACAACTCAAGGGGAAACGTCACAAGTGAACGTC
CATNCTTAACCACTGAGGTGCGCACCCCCACCGCCGCGACAAAGCGCGAC
GCGAGAGATTCCGGTGCACGCGTCCGTCGGACGGGAGGAAAATCCCGGTC
GGGCAGGAAACGCAGGAAGAGGCCCTCTGTTGGTGTCACAGGTGGAGGCC
TATCCAATCTTAAGAGCAAGCTCGAGGAGGAGGATTACTACAGACAGCAG
GGCGAGGCGAGGAGGGAGGCATCGGCCCGTAAAGCTCGCGCGACTGCCGA
AGACGAACGGCGAATCACAAAGTCCGCGGGGAATCACCCCGTTGATTGTC
GGCGCAGGAGTCACGGCGGGAATNGGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAAGT
GTCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTA
ACCGCGATAGGCGATCTGCGCATCGTCGGCTTCTAGTGATGTGTAGTGTA
CGGGGGTGGTGAAGGCAATTTTGCGTGGTCGGCACATGGGTTCGCACGAC
GTCAAAGGGCTCAGTGGGCAAAGTCTACGGGTACGTGTCGCGATGTGATC
AACTTTGTAGCGGAGCGATTTGTTCTTACTCCATATTTCAAGCCACATTT
CGCGCGTCCTTGTTGGCGGTTAAACAGGCGCGTGCTTCGCTTCCGTTGGA
TGCAGCCATCCGTCAAATACGACGACCCTGGGATGCAAGATATCAGGCGG
ACTAACAGAAGCCTGACGCTGACCAGCCGGCTAGAGCGCGCGTTTTCTCC
CCTGTATTTTCTTACCCAGTTGCGCAGGGAAGTGGACGAGGGAGATTATT
TTCCCTTCGGCCGCGCTGGGTGTCCGTTGTTTTCTGGCATGGTACTTTGT
TAGTCGCAAACTGCCTGAAAGGTACGAGGATGCTGTGTGCGTTCCGGGCC
TGTGTCGTACT
back to top

Coding sequence (CDS) from alignment at Scaffold_235:234259..235369+

>EsuBft954_4a-0001 ID=EsuBft954_4a-0001|Name=EsuBft954_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_235:234259..235369+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCAACATGGGACCTCCGTCAGGTTACGGAAGGTGGAGGCCTATC
CAATCTTAAGAGCAAGCTCGAGGAGGAGGATTACTACAGACAGCAGGGCG
AGGCGAGGAGGGAGGCATCGGCCCGTAAAGCTCGCGCGACTGCCGAAGAC
GAACGGCGAATCACAAAGTCCGCGGGGAATCACCCCGTTGATTGTCGGCG
CAGGAGTCACGGCGGGAATNGGAAAGCCCTGGGTATGGGAGACCGCAGGG
CGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGGACGG
TGA
back to top