EsuBft954_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft954_10a-0001
Unique Name	EsuBft954_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_235	contig	Scaffold_235:198102..201277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft954_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	258
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-01_004510.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft954_10a	EsuBft954_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_235 198102..201277 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft954_10a-0001	EsuBft954_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_235 199039..200028 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft954_10a-0001-exon	EsuBft954_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 198102..198243 +
EsuBft954_10a-0001-exon	agat-exon-47339	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 198838..201277 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft954_10a-0001-exon	agat-five_prime_utr-15257	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_235 198102..198243 +
EsuBft954_10a-0001-exon	agat-five_prime_utr-15258	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_235 198838..199038 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft954_10a-0001-cds	EsuBft954_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_235 199039..200028 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft954_10a-0001-exon	agat-three_prime_utr-23440	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 200029..201277 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_235:198102..201277+
coding sequence from alignment at Scaffold_235:198102..201277+

spliced messenger RNA

>EsuBft954_10a-0001 ID=EsuBft954_10a-0001|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2582bp|location=Sequence derived from alignment at Scaffold_235:198102..201277+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTTGCGCACTGCACGCACATCCACCTGCCACACCGCACTTTCACA
TCTCCCATCAAGACACCAACCAAATCATCACGGAACCAAACTAAACCAAA
CCTGGCTACAAACTGGACAACACAAGGAAGCCAAGTATCTAGGTGTGTCA
TCTGTCCCGAACGTCGAACGTCAGGTTGAACTTGTCGGCGGCTTATTTTC
TGGCCAACAGGAACGGCGAACGTCAACCACACGCAACTCAGCTGTGCACT
GTCGCTACTACTGCTGTGGTACCACCAACAGCAGCGAACGAAGCAGCAAC
AGCAGCGGCACCTTCCCACGCGAGGAACGTCACAGCTAGGCACATGTCTT
CTCCGTCATGCCTTACGAGAAGGCAGCGGTCCTACGCCAGCCACGCCTCC
CACAACAACCCGCACAGCCTGGAGCCCTTTTCCGCCGCCCTGATCCCGAA
CCACGAGAGGGGAACTCTGCAAACCTTCCAAGGCGCCGGCGCCGGCGCCG
GTGCCGGCGGGCCGCGCGGTCGCCGACGAGGCTCCCCGTTCGCCGCCCTG
TCGGAAGCATACAAGCCGGCGAGGGCGCCCGTCTTCTCGCGCCCCCGCGG
CCGCGACGGCGGCGAGGTTCTCGGGCTTCGTTCGTCCTGCAGCTTCGTGG
CGTGGCCCAGGCCCGGCGGCGGAGACCAGCTGCTGCCCGCCGACCCCCGC
TACGTGCAGAAGAAAAAGCCGCAGCGGCAGGCGGGGGCGGAGGTCAAGAT
CATCACCACGACCGCGGCGAAGAAACCCGTCCTGCTGCTGCCGCGGAAGA
AGACGGACGAGAACGCGGTGCTGGAGCGATGGGTCTCCTCGTCGTCTTCG
TCTTTGATGGCGGAGGCAGCATCGACGGCGGCCACTACCCCCCCGCCCAC
GCCGTCACCGCCCTCCCGGTCCCACCGCAAGAGTGTGTCGTGGCCGGAGG
ACCTTATCCGCTCCGTCCACCGCTTTCCGGCCGCCGCGTCTCAGGCCGAC
GTCTACTCCCCGGACCTGCAGGCCGTCGAGATCGCCAAGGAGCTGGCCGT
CCGGGCGAGGAACCCGGAGCTGCGGCGGGCGGCCCTGCAGGTGGACTACT
GCCGGCGGCACGCCGCGCAGGTCGTGCGGTCCCTGACCTCGGCACAGAAC
GGCGGGCTCGACGGGGTGGAGGAGGCGTGCCGGCTGTACGGCTGGAGGGA
GGAGACGTTCCTGCGCGAGATGGACGAGCTCGTGCGGTCCATCGTCGTGG
AGGGGGGAGAGAGGGAGGTGTGGCTACTCAAGTCGAGCTTCAGAGCGGCG
CGAAGGAGGATGGAGGACGCGGAATCGGACTGAAAAAATGAAAAAAAGGA
AAGCCGGCCCTGCCGGCGTTGGTGCTCAAGCGGGGACGGGCGGAGCTGAA
TTATCGCCTCGTGTGTTGCGGTGGGAAAACGTGTTGTTGTATGAAATAGT
AAAACATGGATTATCCACTGCTTGTAGATATACATGGGTTGATTTCCACA
CCGGTGATGATGCCCACACGATGATGAACGCAAGAGAGAGAGATGATTGA
TTTGGAGATGCCGCGATAGAGCTTGTTGCCCGTTGGCGGCGGTTACACAC
CACGGGGAGGAGGGTGCGTGGGACTTCGACGCACTGAAAAAATATTCGAA
TATGCGTTGAGAAGGCTAGTAGGGCCGACGACGTTTGGTTTCTCTCAGGT
TGGCGTTTCTGTGTGAAGTGAACCCGCCGGGTGGGCTTGCAGCGTCGGAG
GCTCTGTTGCCCCCCATGGCGGCGCAGTAAGCGCGTGTGAGTATGCGTAC
ATGCCCGTCGCAGCGTATTGAGAAAAATTCGCAAAAGGCGGCCCTCGCCG
AATCGTCGGTGTTGTGTCTCCGCGAGAACCGGTGGGAGTTCTCGTGTTTT
TTTGTGTGGTGTAGAGTGTACGTGTGCATGCTCAGAAATATCATGCGTGT
TTGTCCATCGCCAAATGGACGGTTCAAAACGCAGTCACTGCATTACTAGA
GTTTTTTTTATCGTGTATCAGGTGTTTCGTTCTAGTGCCTTGCATCGTTG
ACTTTGGGGTGGGTCGGGGGGGGGCAATTTTGAGTAAAATGTATCGTTTC
AAATCAAACACAAACACGATGATGCTTAAGTCCATGGCTTTAATGTCAAA
TGACAAATACAACCGTGGTTTTGAAGCCATCCGAAGGTGTTGATTTACAT
GCCGGGGGCGAGCTTGTTCATCGGTGCGTAGTGGGCACGTACTGTACCAC
TTGTTTTTATGTTTGGTCGACTTGCTCATAACCGGCGCGATGGTATAGAA
AGTGAAGACGAGTGAGGTCTGTGTGATTGGTTGGGTAGAAACAGCTGCCT
CGGTATGTAGATGACACGAGGGCTGTTAGACGTTGGTGTTACGATACGTC
ACGGATAGAGGGTAATCGTGTTTACTCGGAGTGGAGAGTGAACAACAAAG
ATCTTGACAAAAACTTTAATTTTTCATCGCATGATGTGGGAGACAGCGGA
TGATGTGCGTCAAACATGTACGAAACGGTGTAGACTGCTGCCGCCAAATA
AAAGATGGGACGAACAAAATAAAAAAAATGGC

protein sequence of EsuBft954_10a-0001

>EsuBft954_10 ID=EsuBft954_10|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MSSPSCLTRRQRSYASHASHNNPHSLEPFSAALIPNHERGTLQTFQGAGA
GAGAGGPRGRRRGSPFAALSEAYKPARAPVFSRPRGRDGGEVLGLRSSCS
FVAWPRPGGGDQLLPADPRYVQKKKPQRQAGAEVKIITTTAAKKPVLLLP
RKKTDENAVLERWVSSSSSSLMAEAASTAATTPPPTPSPPSRSHRKSVSW
PEDLIRSVHRFPAAASQADVYSPDLQAVEIAKELAVRARNPELRRAALQV
DYCRRHAAQVVRSLTSAQNGGLDGVEEACRLYGWREETFLREMDELVRSI
VVEGGEREVWLLKSSFRAARRRMEDAESD

mRNA from alignment at Scaffold_235:198102..201277+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft954_10a-0001 ID=EsuBft954_10a-0001|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3176bp|location=Sequence derived from alignment at Scaffold_235:198102..201277+ (Ectocarpus subulatus male Bft15b)
ATGCACTTGCGCACTGCACGCACATCCACCTGCCACACCGCACTTTCACA
TCTCCCATCAAGACACCAACCAAATCATCACGGAACCAAACTAAACCAAA
CCTGGCTACAAACTGGACAACACAAGGAAGCCAAGTATCTAGGTGAGCCC
CCGACAGGAAGGCGAGCCTCTCCTGGCCATGACGGCGGTGGGAGTGGTGA
ACGGTGTGCAGCGTGGACAGAGCGTCGGATAATTTTCGCGGCCCGTTTTT
CTCTCTGTTTGAAAATTGAAAATGCATGACGTTCACCCGCACGAACGACC
CCTGGTTGTGGCGGCGCTGTGCGTCACCTCGTGCTTTCCCGAACTCCCAT
GCCGCCTTTCCGGACCTGCATGTCATGTCGTCGTTGTGGCTTGTTACAGC
TCCTGCTCCCTGTCTCACGCTTTCTGAAATATCAACGTATCGCGCTGCAT
AGCCTACACCTCACACCGGGTCAAATCGGCGGGGTGTTTTTCTTGTTGGA
TTACTTACGCACACGGATTGGTGGATTTCGAACCTTCGAACAGTCTACGT
CCCAAACCCTGTCATCGATGTCATGCTCTTTTTCGGTGAACGTTTTCCGC
GAAACCTGCGTCTGAGTGTCCCCGTCATCTCGCTTCGAGTATCTCACGCG
GCTCTTCTCCTCCCTCTCCATCCCTACCACCGCCCCGCGCCTGCTTGCCC
CGCGGCCGGCATGGTGTGCTGTCTTTCTTCCAGCAGGTGTGTCATCTGTC
CCGAACGTCGAACGTCAGGTTGAACTTGTCGGCGGCTTATTTTCTGGCCA
ACAGGAACGGCGAACGTCAACCACACGCAACTCAGCTGTGCACTGTCGCT
ACTACTGCTGTGGTACCACCAACAGCAGCGAACGAAGCAGCAACAGCAGC
GGCACCTTCCCACGCGAGGAACGTCACAGCTAGGCACATGTCTTCTCCGT
CATGCCTTACGAGAAGGCAGCGGTCCTACGCCAGCCACGCCTCCCACAAC
AACCCGCACAGCCTGGAGCCCTTTTCCGCCGCCCTGATCCCGAACCACGA
GAGGGGAACTCTGCAAACCTTCCAAGGCGCCGGCGCCGGCGCCGGTGCCG
GCGGGCCGCGCGGTCGCCGACGAGGCTCCCCGTTCGCCGCCCTGTCGGAA
GCATACAAGCCGGCGAGGGCGCCCGTCTTCTCGCGCCCCCGCGGCCGCGA
CGGCGGCGAGGTTCTCGGGCTTCGTTCGTCCTGCAGCTTCGTGGCGTGGC
CCAGGCCCGGCGGCGGAGACCAGCTGCTGCCCGCCGACCCCCGCTACGTG
CAGAAGAAAAAGCCGCAGCGGCAGGCGGGGGCGGAGGTCAAGATCATCAC
CACGACCGCGGCGAAGAAACCCGTCCTGCTGCTGCCGCGGAAGAAGACGG
ACGAGAACGCGGTGCTGGAGCGATGGGTCTCCTCGTCGTCTTCGTCTTTG
ATGGCGGAGGCAGCATCGACGGCGGCCACTACCCCCCCGCCCACGCCGTC
ACCGCCCTCCCGGTCCCACCGCAAGAGTGTGTCGTGGCCGGAGGACCTTA
TCCGCTCCGTCCACCGCTTTCCGGCCGCCGCGTCTCAGGCCGACGTCTAC
TCCCCGGACCTGCAGGCCGTCGAGATCGCCAAGGAGCTGGCCGTCCGGGC
GAGGAACCCGGAGCTGCGGCGGGCGGCCCTGCAGGTGGACTACTGCCGGC
GGCACGCCGCGCAGGTCGTGCGGTCCCTGACCTCGGCACAGAACGGCGGG
CTCGACGGGGTGGAGGAGGCGTGCCGGCTGTACGGCTGGAGGGAGGAGAC
GTTCCTGCGCGAGATGGACGAGCTCGTGCGGTCCATCGTCGTGGAGGGGG
GAGAGAGGGAGGTGTGGCTACTCAAGTCGAGCTTCAGAGCGGCGCGAAGG
AGGATGGAGGACGCGGAATCGGACTGAAAAAATGAAAAAAAGGAAAGCCG
GCCCTGCCGGCGTTGGTGCTCAAGCGGGGACGGGCGGAGCTGAATTATCG
CCTCGTGTGTTGCGGTGGGAAAACGTGTTGTTGTATGAAATAGTAAAACA
TGGATTATCCACTGCTTGTAGATATACATGGGTTGATTTCCACACCGGTG
ATGATGCCCACACGATGATGAACGCAAGAGAGAGAGATGATTGATTTGGA
GATGCCGCGATAGAGCTTGTTGCCCGTTGGCGGCGGTTACACACCACGGG
GAGGAGGGTGCGTGGGACTTCGACGCACTGAAAAAATATTCGAATATGCG
TTGAGAAGGCTAGTAGGGCCGACGACGTTTGGTTTCTCTCAGGTTGGCGT
TTCTGTGTGAAGTGAACCCGCCGGGTGGGCTTGCAGCGTCGGAGGCTCTG
TTGCCCCCCATGGCGGCGCAGTAAGCGCGTGTGAGTATGCGTACATGCCC
GTCGCAGCGTATTGAGAAAAATTCGCAAAAGGCGGCCCTCGCCGAATCGT
CGGTGTTGTGTCTCCGCGAGAACCGGTGGGAGTTCTCGTGTTTTTTTGTG
TGGTGTAGAGTGTACGTGTGCATGCTCAGAAATATCATGCGTGTTTGTCC
ATCGCCAAATGGACGGTTCAAAACGCAGTCACTGCATTACTAGAGTTTTT
TTTATCGTGTATCAGGTGTTTCGTTCTAGTGCCTTGCATCGTTGACTTTG
GGGTGGGTCGGGGGGGGGCAATTTTGAGTAAAATGTATCGTTTCAAATCA
AACACAAACACGATGATGCTTAAGTCCATGGCTTTAATGTCAAATGACAA
ATACAACCGTGGTTTTGAAGCCATCCGAAGGTGTTGATTTACATGCCGGG
GGCGAGCTTGTTCATCGGTGCGTAGTGGGCACGTACTGTACCACTTGTTT
TTATGTTTGGTCGACTTGCTCATAACCGGCGCGATGGTATAGAAAGTGAA
GACGAGTGAGGTCTGTGTGATTGGTTGGGTAGAAACAGCTGCCTCGGTAT
GTAGATGACACGAGGGCTGTTAGACGTTGGTGTTACGATACGTCACGGAT
AGAGGGTAATCGTGTTTACTCGGAGTGGAGAGTGAACAACAAAGATCTTG
ACAAAAACTTTAATTTTTCATCGCATGATGTGGGAGACAGCGGATGATGT
GCGTCAAACATGTACGAAACGGTGTAGACTGCTGCCGCCAAATAAAAGAT
GGGACGAACAAAATAAAAAAAATGGC

Coding sequence (CDS) from alignment at Scaffold_235:198102..201277+

>EsuBft954_10a-0001 ID=EsuBft954_10a-0001|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_235:198102..201277+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCTCCGTCATGCCTTACGAGAAGGCAGCGGTCCTACGCCAGCCA
CGCCTCCCACAACAACCCGCACAGCCTGGAGCCCTTTTCCGCCGCCCTGA
TCCCGAACCACGAGAGGGGAACTCTGCAAACCTTCCAAGGCGCCGGCGCC
GGCGCCGGTGCCGGCGGGCCGCGCGGTCGCCGACGAGGCTCCCCGTTCGC
CGCCCTGTCGGAAGCATACAAGCCGGCGAGGGCGCCCGTCTTCTCGCGCC
CCCGCGGCCGCGACGGCGGCGAGGTTCTCGGGCTTCGTTCGTCCTGCAGC
TTCGTGGCGTGGCCCAGGCCCGGCGGCGGAGACCAGCTGCTGCCCGCCGA
CCCCCGCTACGTGCAGAAGAAAAAGCCGCAGCGGCAGGCGGGGGCGGAGG
TCAAGATCATCACCACGACCGCGGCGAAGAAACCCGTCCTGCTGCTGCCG
CGGAAGAAGACGGACGAGAACGCGGTGCTGGAGCGATGGGTCTCCTCGTC
GTCTTCGTCTTTGATGGCGGAGGCAGCATCGACGGCGGCCACTACCCCCC
CGCCCACGCCGTCACCGCCCTCCCGGTCCCACCGCAAGAGTGTGTCGTGG
CCGGAGGACCTTATCCGCTCCGTCCACCGCTTTCCGGCCGCCGCGTCTCA
GGCCGACGTCTACTCCCCGGACCTGCAGGCCGTCGAGATCGCCAAGGAGC
TGGCCGTCCGGGCGAGGAACCCGGAGCTGCGGCGGGCGGCCCTGCAGGTG
GACTACTGCCGGCGGCACGCCGCGCAGGTCGTGCGGTCCCTGACCTCGGC
ACAGAACGGCGGGCTCGACGGGGTGGAGGAGGCGTGCCGGCTGTACGGCT
GGAGGGAGGAGACGTTCCTGCGCGAGATGGACGAGCTCGTGCGGTCCATC
GTCGTGGAGGGGGGAGAGAGGGAGGTGTGGCTACTCAAGTCGAGCTTCAG
AGCGGCGCGAAGGAGGATGGAGGACGCGGAATCGGACTGA