EsuBft321_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft321_12a-0001
Unique Name	EsuBft321_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_235	contig	Scaffold_235:127345..131986 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft321_12
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	7
Length	183
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-00_010640.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft321_12a	EsuBft321_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_235 127345..131986 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft321_12a-0001	EsuBft321_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_235 127345..131986 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft321_12a-0001-exon	agat-exon-90358	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 127345..127458 +
EsuBft321_12a-0001-exon	agat-exon-90355	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 127746..127889 +
EsuBft321_12a-0001-exon	agat-exon-90359	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 128493..128573 +
EsuBft321_12a-0001-exon	agat-exon-90357	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 129088..129205 +
EsuBft321_12a-0001-exon	EsuBft321_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 129511..129650 +
EsuBft321_12a-0001-exon	agat-exon-90354	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 130054..130221 +
EsuBft321_12a-0001-exon	agat-exon-90356	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 130916..131986 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft321_12a-0001-cds	EsuBft321_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_235 127345..127458 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_235:127345..131986+
coding sequence from alignment at Scaffold_235:127345..131986+

spliced messenger RNA

>EsuBft321_12a-0001 ID=EsuBft321_12a-0001|Name=EsuBft321_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1836bp|location=Sequence derived from alignment at Scaffold_235:127345..131986+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGCTCAAGAAGCTTCAGAAGGAAAGACTGATCGTGGCGCGGCT
AGGCTTTCCCGACAAAGCCATGGAGATCGATGAGCACATCGAAAAAATAC
GCGCGGATCTCAGGAGCGAGCGCGAAAAGGTGGACTCGAGGATTCTCGAG
GAGGAGTTGGCGGCACTAGCCATCCAGCACCGTGAAAAGCTGACTAGCCT
TGAACAAGAGCTTAAGGAAGACGAGCAAAAAGTCAGCAGGTCGTTCGAGC
GGGAAAGGGCTGTGCTCCTGCGAAAGCAGGAGAAGCAGTTTGTTCAGCTT
GTGGATGACGCTATCAAGCGAGCAATCGGCAAGAGCAAGTCGTGTTCTTG
CTCGAAGAAATACCTGTGCCACCACAACAAGACGGCCAGCTTCAACACTC
GCAGGCCAAAGAAGGAGGTCATCCACTTCCGAAAGAACGCGAAACGCCTT
CGACACGGAGGCAGACTAGACGAGTCTGCGGCATGGGAGGAGAAAGCAGC
GGAACTTGACGCGAATCATTTGGATTCCTGGCGAGAAGAGGTTGCCGCTT
CATTGACGGCTAGCGCGTGGGGAGGGAGCAGCAGTGCTCTGGACCAACTT
GCCACCCAGCATCAGCGCGAGATTAGCCGGATGGAAACGGCGCAGGCAAA
CGGGTGGACGCTGATGCTGATGCGGCACCAAACCGCTCGGAGAAACTGTC
ACAACGTCATCATGGTCGAGCGGAAGAAGGCAAGCAAGGGAAAACGCTCG
GCTGCATTTGTGCGGGACGTCGAGGGTATACTTAAGACCGTCATGGAGGA
CGGGGGTTCAGTCACAGGAGAAGCAGAAGGAAAGGAATCCCAACCCAGCG
GTGGCGTAGCGGCGGGCCGACCACCAACACGTCCGAGTAGTGCTCCGCCG
GCACGCGGAAAGAGACCGCAGCCGGCCGCCGCCACCACCAGAAACATCAA
CCAGCATGTATCGGAAACTGTGGCAGCGTCACCGTCAGCAACAGAGAATG
CTGGCGAGGGTGAGAATGTTGGCGCAGCGAACGAAGGCGTAGACGTCGAT
GACGACGATTCTTTCGGCAAAGACTCGCACGATCTCCGGTGCTTCGATGA
GCTTGAGGACGAGGCGTGGAAGAACTTTTCCTACGACGATTACCCCGCCG
CCGGTTCGCCGGAGGAACCGGAGTGGATCCACACCCCGTGGTGCGGGACG
AACAGCGGTGACATTCCCGTCCTTGACAAGGTCTCGGGCAGGAAGGTTCT
CGACAGCGATGGGGTACCGATGGTACAGCTTGTGCTACCCACGTCGGCGG
CTTCCGCTCCTCCGTCGTCCGCCTCCTCTGCGGACGGTGTCGATGGCAAT
ACCGCTACACAGCCGGTGGTCAGGGGTGGTGACGCTTCCGAAGGCTTTGG
CGACGGGGGGGACAAGGGAGTTATCGCAGAGCATAAAAGAGACGTTGGCA
GCCCCCGCAGTGGCGCACAAGATGGTGCTGACAAAGGAAGGCCGTGTTCG
GCAACTGGAGAGTTGTTTACAGGAGACCCAGCAGCTGCAATATCGCCCCT
TAGTTTTGCCGGGGAGGGGGAGGAGAGGGACAGCCAAGGCGACGGTGGCG
GTAGCGGGAGAAGTCCGGGTAGCGTAGGAGATGGCTTCACGTCGCCACGG
GCTCTGGCCGGGGGCGGCGAGCTGCGGAGGTACAACTGGCTAGGAGCTGG
CGCCGCGCCCACGAAGCCATCGCTCCTCGCGACGAGTCGGATACCGTCGG
GAAACCGTGCCGACAAGCAAAGGTTCAGAAACGCGAAGAGACAAGATTCC
AACAGAAAGGTGGATGACGCGACGACACAGGATTAG

protein sequence of EsuBft321_12a-0001

>EsuBft321_12 ID=EsuBft321_12|Name=EsuBft321_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=611bp
MAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILE
EELAALAIQHREKLTSLEQELKEDEQKVSRSFERERAVLLRKQEKQFVQL
VDDAIKRAIGKSKSCSCSKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRL
RHGGRLDESAAWEEKAAELDANHLDSWREEVAASLTASAWGGSSSALDQL
ATQHQREISRMETAQANGWTLMLMRHQTARRNCHNVIMVERKKASKGKRS
AAFVRDVEGILKTVMEDGGSVTGEAEGKESQPSGGVAAGRPPTRPSSAPP
ARGKRPQPAAATTRNINQHVSETVAASPSATENAGEGENVGAANEGVDVD
DDDSFGKDSHDLRCFDELEDEAWKNFSYDDYPAAGSPEEPEWIHTPWCGT
NSGDIPVLDKVSGRKVLDSDGVPMVQLVLPTSAASAPPSSASSADGVDGN
TATQPVVRGGDASEGFGDGGDKGVIAEHKRDVGSPRSGAQDGADKGRPCS
ATGELFTGDPAAAISPLSFAGEGEERDSQGDGGGSGRSPGSVGDGFTSPR
ALAGGGELRRYNWLGAGAAPTKPSLLATSRIPSGNRADKQRFRNAKRQDS
NRKVDDATTQD

mRNA from alignment at Scaffold_235:127345..131986+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft321_12a-0001 ID=EsuBft321_12a-0001|Name=EsuBft321_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4642bp|location=Sequence derived from alignment at Scaffold_235:127345..131986+ (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCTCAAGAAGCTTCAGAAGGAAAGACTGATCGTGGCGCGGCT
AGGCTTTCCCGACAAAGCCATGGAGATCGATGAGCACATCGAAAAAATAC
GCGCGGATCTCAGGGTGAGGTCGCTTCGTTCCGGGTCTATTCACAAGCAG
AAAGCTGTGTTGCCGTAGGCTACATAGAAAATTTGATGGGTTAGGCGTCG
TTTGTACACTACTGCGGAGCTCACTTTCTCTTTTTTTTGTGGTCCTCTGA
TGGACTGTCTGAATTTCAATTCGGGACGCTGGCAATCACGAAAACCTTTA
TCATGCTGGTTCGATTTGTGCGGTTGCACGTGTCTTGCTTGTTTCTCGTT
TGCCTGTTGGGTACATCACACCCGCTCTGGAATGGCAACATGCGTCGTCA
GAGCGAGCGCGAAAAGGTGGACTCGAGGATTCTCGAGGAGGAGTTGGCGG
CACTAGCCATCCAGCACCGTGAAAAGCTGACTAGCCTTGAACAAGAGCTT
AAGGAAGACGAGCAAAAAGTCAGCAGGTCGTTCGAGCGGGAAAGGGTACG
TGGAGAAACCAAAATACTCCACGTTGTTCAAGGGCCGTTGGCCTCTACTC
TACTGCCTTCAAGCCGAGAGTCGTGGCCTGGGTGTAGTGCGCGCGATTCA
TCGAGAAAGTTGTCTCTCGTTTTTACAAATAGACAAGCATTGACCGCCGC
CTGCCTTGTGAGCGTTTGATTTCGTGCTCAAGGTTAGTTTAGAGGAGGGA
CGGCACAAATCAGTACCTGGTCTCTTAACATTGCTACAAACCAGCATTCT
TGATCACCTCCCATTACCTCGCCGGGAGAGGAGTTGCGCACGGTGGACCA
CGCTAAATCTTAGAGTATCCCAGCTGTTGAGATGGCTAATTTAGGTGATT
GTCGGAATAACTTGACCCTCGAAAGGTGACCAGTGTGTGGGTAGCTTCGG
CTGTACTTCACGTCAAAACGCTGAGTGGCTCTGCCAGGCGTCTTCTCGGC
CCCAACCGGGATGCACAACCAATGGTCTATCGACGAAGCCAGCGATGAAT
TGAGTGCTTCTTCCCTCTCGCCTCCAGAGGTTTCGCCTTTGACCACGTTT
GACTTGATATCTCGTTGCGTCCCATGACGTGCTTATGTGAACCAACAGGC
TGTGCTCCTGCGAAAGCAGGAGAAGCAGTTTGTTCAGCTTGTGGATGACG
CTATCAAGCGAGCAATCGGCAAGAGCAAGGTAAAGCGTTGAAACTACAGA
TGATGTCCCTGTAGGAGCCATGTTTACTCTTACTTGATAATTTCAACTCG
CTTCTAGTCGAAATGCATAGCGTTTGTATCCCCCATGACCATTCTACCGC
TAACAAGGATAAGAGTTGTGACCCCTTGGTCCCGGGTTCTTGATACATCA
TACGTGGTATGACCTCAATACGCTAATTGACTTGTCAACATGGATGTTTG
TCTATAATGACAACGTTATCAGTGCTGGCACACCCTTGTGTCAATTGTTC
TCTCAAGTTCATCTTGCAAAACGTCAAATAGACCTCCCGGCTATGCTAGC
TTACGCGTTATTTGAAACAGGAGAACCCCAGAAGAAGAATTTTGCTTCAT
ACACCTCCTGTATGTCATCTGTCACATGTTCTAGCTAGTCGCCTTGTTTT
CATACCCACACTACCTCATTCCGTCCTCGACCCACCACGCACCCTGCCTG
CTGATCTGTTCGACAACACGTGACAATGACAAACACGGCTTAGTCGTGTT
CTTGCTCGAAGAAATACCTGTGCCACCACAACAAGACGGCCAGCTTCAAC
ACTCGCAGGCCAAAGAAGGAGGTCATCCACTTCCGAAAGAACGCGAAACG
CCTTCGACACGGTACGGACACACAAGGACAAAGCGACATTGTGTGTGCGG
CCATTGCTTGTAGCTAGTTCACCAACGTGTTTCGATCTCGCGTGGTGCAG
CGAGTTCTTTCCCTACACGGGGAGGTCGAGATGCTCGGGTGGCCGTCCTA
CTCGCATTTTAGCATGTTACATAGGTTGAAGCGTTTCACTCCAATTCAGC
AGTTCCGATGTACATACGAACGCTGTTTTGGGCGGAGGAAATTGGGTGAC
TCGCGTTAGATCTATTTGACAAGCACCTTCTGTTTTGCGATGGCCCGAAA
TGTACGCTATCAACAGGAGGCAGACTAGACGAGTCTGCGGCATGGGAGGA
GAAAGCAGCGGAACTTGACGCGAATCATTTGGATTCCTGGCGAGAAGAGG
TTGCCGCTTCATTGACGGCTAGCGCGTGGGGAGGGAGCAGCAGTGCTCTG
GACCAAGTGAGGATTCAGAGCAACATCTCGCCGGGGCTTCTGACTATCAT
GAGGCAACTCGGGAAGTTGTTCGGGAGGGCTCTTCTAGGCTCCATCGTCA
ACGGGAAGGCGATGTTCCTCAGAACGAACATCAAGGCGTAGATCGAAACG
CACTACATCCTCCTTTTCCCGTGGTCTCGTGATCGGCTGGTTTGGACCGG
AAGGCTTCTATTGGAAGAGAAGATGTGCATATTTTGCTGTTCCGTGCCAT
GATTCGTGTGCTAGGTACCTCTGTATGGTCCTGAAGCTACCACTACTCTC
TGTGGCTTGTGTCTCTTCACCAGCGTGAAATCGAACCCGCCCGAACCTTG
GAAAGTTTGAGTTGCGTCCTGACGGCAACGTACCTTGACCATCTGTCTCC
CATGAGCAGCTTGCCACCCAGCATCAGCGCGAGATTAGCCGGATGGAAAC
GGCGCAGGCAAACGGGTGGACGCTGATGCTGATGCGGCACCAAACCGCTC
GGAGAAACTGTCACAACGTCATCATGGTCGAGCGGAAGAAGGCAAGCAAG
GGAAAACGCTCGGCTGCATTTGTGCGGGTTCTCGCAGCGAGAAATGAATC
TTGCAGTGCTTCCGCACGAACAGCGGAGACAAGAAAAATCTGGGCGCAGT
AACTGAGCATTCGGACCTCTACTGTTGCCTGTGTAGCCTCCCTTGAGAAG
AGGTGCATCGCGAGTGCGTTTTGTGTCACCTCCATTCGTAGCCTTCTTCG
CCGACGTCCTACACACCCAATCCCCAATGTTTGTCAACTTAGCTTCGACA
CGCGTGTAAGAAGAGCGCCGAGGAAAGACATCGACGAGAGATGTTGGGGG
AGGCAGACCCGACAGAAGCAGGGGCCGCACCCTCTGGTGCTACGGACGAG
GCGAGTTGTTTGCACCCACACTACTGCTGTATCCGATTTGTCGTTGCAGT
CATCGTGTTATGTTACTTCAGCTTCGCCTCCCCTGTCCCTGTCACATCAA
TTTTCCTTAGCACAGGTTCTAACCTAACCACTCTTAAAATGAACTTCAAC
ACATTCCCCTTGACTCCCGTCTTGGGTGAGTAGTCCGTCTGTGATGGCAT
GTATAGCTATTGAAACGTGCCGGTGGTCGAAAGGGGTACTAAATAGCTTA
ACAAGCAAAGCAACAATTGAGGACTGTCCCTTCCCGTTCTCCGTCGCGCC
CCCTCATGGCCTGTTGCGCTAAACATACACGCCGACCACGAGCGATAATA
TCGTATCTCTTGTACCTGAAGGACGTCGAGGGTATACTTAAGACCGTCAT
GGAGGACGGGGGTTCAGTCACAGGAGAAGCAGAAGGAAAGGAATCCCAAC
CCAGCGGTGGCGTAGCGGCGGGCCGACCACCAACACGTCCGAGTAGTGCT
CCGCCGGCACGCGGAAAGAGACCGCAGCCGGCCGCCGCCACCACCAGAAA
CATCAACCAGCATGTATCGGAAACTGTGGCAGCGTCACCGTCAGCAACAG
AGAATGCTGGCGAGGGTGAGAATGTTGGCGCAGCGAACGAAGGCGTAGAC
GTCGATGACGACGATTCTTTCGGCAAAGACTCGCACGATCTCCGGTGCTT
CGATGAGCTTGAGGACGAGGCGTGGAAGAACTTTTCCTACGACGATTACC
CCGCCGCCGGTTCGCCGGAGGAACCGGAGTGGATCCACACCCCGTGGTGC
GGGACGAACAGCGGTGACATTCCCGTCCTTGACAAGGTCTCGGGCAGGAA
GGTTCTCGACAGCGATGGGGTACCGATGGTACAGCTTGTGCTACCCACGT
CGGCGGCTTCCGCTCCTCCGTCGTCCGCCTCCTCTGCGGACGGTGTCGAT
GGCAATACCGCTACACAGCCGGTGGTCAGGGGTGGTGACGCTTCCGAAGG
CTTTGGCGACGGGGGGGACAAGGGAGTTATCGCAGAGCATAAAAGAGACG
TTGGCAGCCCCCGCAGTGGCGCACAAGATGGTGCTGACAAAGGAAGGCCG
TGTTCGGCAACTGGAGAGTTGTTTACAGGAGACCCAGCAGCTGCAATATC
GCCCCTTAGTTTTGCCGGGGAGGGGGAGGAGAGGGACAGCCAAGGCGACG
GTGGCGGTAGCGGGAGAAGTCCGGGTAGCGTAGGAGATGGCTTCACGTCG
CCACGGGCTCTGGCCGGGGGCGGCGAGCTGCGGAGGTACAACTGGCTAGG
AGCTGGCGCCGCGCCCACGAAGCCATCGCTCCTCGCGACGAGTCGGATAC
CGTCGGGAAACCGTGCCGACAAGCAAAGGTTCAGAAACGCGAAGAGACAA
GATTCCAACAGAAAGGTGGATGACGCGACGACACAGGATTAG

Coding sequence (CDS) from alignment at Scaffold_235:127345..131986+

>EsuBft321_12a-0001 ID=EsuBft321_12a-0001|Name=EsuBft321_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1836bp|location=Sequence derived from alignment at Scaffold_235:127345..131986+ (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCTCAAGAAGCTTCAGAAGGAAAGACTGATCGTGGCGCGGCT
AGGCTTTCCCGACAAAGCCATGGAGATCGATGAGCACATCGAAAAAATAC
GCGCGGATCTCAGGAGCGAGCGCGAAAAGGTGGACTCGAGGATTCTCGAG
GAGGAGTTGGCGGCACTAGCCATCCAGCACCGTGAAAAGCTGACTAGCCT
TGAACAAGAGCTTAAGGAAGACGAGCAAAAAGTCAGCAGGTCGTTCGAGC
GGGAAAGGGCTGTGCTCCTGCGAAAGCAGGAGAAGCAGTTTGTTCAGCTT
GTGGATGACGCTATCAAGCGAGCAATCGGCAAGAGCAAGTCGTGTTCTTG
CTCGAAGAAATACCTGTGCCACCACAACAAGACGGCCAGCTTCAACACTC
GCAGGCCAAAGAAGGAGGTCATCCACTTCCGAAAGAACGCGAAACGCCTT
CGACACGGAGGCAGACTAGACGAGTCTGCGGCATGGGAGGAGAAAGCAGC
GGAACTTGACGCGAATCATTTGGATTCCTGGCGAGAAGAGGTTGCCGCTT
CATTGACGGCTAGCGCGTGGGGAGGGAGCAGCAGTGCTCTGGACCAACTT
GCCACCCAGCATCAGCGCGAGATTAGCCGGATGGAAACGGCGCAGGCAAA
CGGGTGGACGCTGATGCTGATGCGGCACCAAACCGCTCGGAGAAACTGTC
ACAACGTCATCATGGTCGAGCGGAAGAAGGCAAGCAAGGGAAAACGCTCG
GCTGCATTTGTGCGGGACGTCGAGGGTATACTTAAGACCGTCATGGAGGA
CGGGGGTTCAGTCACAGGAGAAGCAGAAGGAAAGGAATCCCAACCCAGCG
GTGGCGTAGCGGCGGGCCGACCACCAACACGTCCGAGTAGTGCTCCGCCG
GCACGCGGAAAGAGACCGCAGCCGGCCGCCGCCACCACCAGAAACATCAA
CCAGCATGTATCGGAAACTGTGGCAGCGTCACCGTCAGCAACAGAGAATG
CTGGCGAGGGTGAGAATGTTGGCGCAGCGAACGAAGGCGTAGACGTCGAT
GACGACGATTCTTTCGGCAAAGACTCGCACGATCTCCGGTGCTTCGATGA
GCTTGAGGACGAGGCGTGGAAGAACTTTTCCTACGACGATTACCCCGCCG
CCGGTTCGCCGGAGGAACCGGAGTGGATCCACACCCCGTGGTGCGGGACG
AACAGCGGTGACATTCCCGTCCTTGACAAGGTCTCGGGCAGGAAGGTTCT
CGACAGCGATGGGGTACCGATGGTACAGCTTGTGCTACCCACGTCGGCGG
CTTCCGCTCCTCCGTCGTCCGCCTCCTCTGCGGACGGTGTCGATGGCAAT
ACCGCTACACAGCCGGTGGTCAGGGGTGGTGACGCTTCCGAAGGCTTTGG
CGACGGGGGGGACAAGGGAGTTATCGCAGAGCATAAAAGAGACGTTGGCA
GCCCCCGCAGTGGCGCACAAGATGGTGCTGACAAAGGAAGGCCGTGTTCG
GCAACTGGAGAGTTGTTTACAGGAGACCCAGCAGCTGCAATATCGCCCCT
TAGTTTTGCCGGGGAGGGGGAGGAGAGGGACAGCCAAGGCGACGGTGGCG
GTAGCGGGAGAAGTCCGGGTAGCGTAGGAGATGGCTTCACGTCGCCACGG
GCTCTGGCCGGGGGCGGCGAGCTGCGGAGGTACAACTGGCTAGGAGCTGG
CGCCGCGCCCACGAAGCCATCGCTCCTCGCGACGAGTCGGATACCGTCGG
GAAACCGTGCCGACAAGCAAAGGTTCAGAAACGCGAAGAGACAAGATTCC
AACAGAAAGGTGGATGACGCGACGACACAGGATTAG