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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Status | Manually annotated |
| Seed ortholog | 2880.D7G3V2 |
| ProteomeId | EsuBft321_8 |
| Protein domains | PTHR24063 |
| Protein domains | IPR003663 |
| Protein domains | IPR005828 |
| Protein domains | G3DSA |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | IPR020846 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | plastidic glucose transporter 4 os:arabidopsis thaliana gn:at5g16150 pe:1 sv:2 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1219 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.18e-186 |
| EggNOG OGs | KOG0254@1|root,KOG0254@2759|Eukaryota |
| Date last modified | 2016-09-23 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K08150,ko:K20286 |
| KEGG TC | 2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8 |
| GOs | GO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0022804,GO:0022857,GO:0022890,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0034219,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:1902600,GO:1904659 |
| Description | Solute carrier family 2, facilitated glucose transporter member |
| Description | glucose import |
| COG category | U |
| BRITE | ko00000,ko02000,ko04131 |
| Note | Groisillier A., annotator |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0044281 |
| GO | 0015149 |
| GO | 0031982 |
| GO | 0015519 |
| GO | 0005887 |
| GO | 0005975 |
| GO | 0043229 |
| GO | 0055085 |
| GO | 0008645 |
| GO | 0005737 |
| GO | 0008643 |
| TCDB | 2.A.1.1.. |
| GO | 0015753 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft321_8a-0001 ID=EsuBft321_8a-0001|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1219bp|location=Sequence derived from alignment at Scaffold_235:104329..109610- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGACGACGAGATTGGCCGCGAGGTAGATGGCATGGGGGGGAACAAGGGCG
AGGAGTACAAGGGCAACGTGTCGTGGGCTGAGGTGTTCGCGTACCGGAGG
CCCGTGATGATCGGAGTATTGCTGATGCTGATTCAGGCGTTCACGGGAAT
CAACACGGTCGTCTTCTACTCGACGACCATCTTCGAGCTGGCAGGCGTCG
ACAACACGGTTTTGGCGACCGTTTCCGTGGGACTGACCCTCGTCGTGATG
ACCTCCGTGTCCGGGAGCCTGGTCGACAAGGCCGGGCGGAGAAGCCTCAT
GCTGATAGGCACGCTCGTCATGGCCCTCGCCCTGGCCATCCTGAGCGGCT
CGCTGCTTTGGCTCAACGCAACGCCTCGGGCGCAGGGATGTCTGGCGGTG
GCTGCGACTCTCCTCTTTATCTCGGGTTTCTCCCTCGGCCAGGGATCCGT
CTGCTGGATCCTGCTCACGGAGATCGTCCCGTCCAGGATCCGCGCACAGG
CGTTCTCCATCTTCACGGCCATCAACTGGCTATCGAACCTCTTCATCGGC
CTCTTCACCCTCTCGGCGATAGACGCCATGGGAGAGTGGTTGCTCCCGTC
GTCGGGAGGCGGGTCGTCGTCGCCGTCCGCGAGGGACCAGCAGAAGGTCG
GCGTCGCCGGGCTGTACGCCCTCTTCTGCGTCCTGAGCGTGCTGGCGGTG
GCATTTATCTACTTCTTCGTGCGCGAGACGATGGGGAAGTCTCTCGAAGA
GCTCGAGGAAGGAGGAGGCGGTGGTGGGTTGGCAGGCGGGGGGAGCGCGG
ACCGGCTTGCGTTTGACATCGGGGGAGCACGCGAAGGGCTTGGCGATGAC
AGCGATTCCACGAACGCCCTGTTGCAGCTGTCCGAGCACGGTGATGCCGA
TGATGAGGACGGAGAGGGTGCATGCCGAGTATTGATATAGTGTAGTGCTT
GCGCGGGAATGTGCAACGTGCTTTATCTCATGATTGCGGTATTTTTTGTT
TTTTTACCCGTGCCGTGGGTGATAGATCGATCAATGAACAATAGTTAGTG
GTGTGCGTTTTAGGGATTGTGCCGGTGACGGGGGTCGTTGTAGGAGGCGA
CGACAACTCTGGACCGCTCTTGTCCGGAAGGAGGAGAAGTACAGCGTACC
CGGAGATAACCTACAAGAAGTCGGTTGTTTACCCAGGACCTTGGGAAGAA
CGCTTGCCGAAGAACATTC back to topprotein sequence of EsuBft321_8a-0001 >EsuBft321_8 ID=EsuBft321_8|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MGGNKGEEYKGNVSWAEVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTI
FELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALA
LAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVP
SRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSA
RDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELEEGGGGGGL
AGGGSADRLAFDIGGAREGLGDDSDSTNALLQLSEHGDADDEDGEGACRV
LI back to topmRNA from alignment at Scaffold_235:104329..109610- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft321_8a-0001 ID=EsuBft321_8a-0001|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5282bp|location=Sequence derived from alignment at Scaffold_235:104329..109610- (Ectocarpus subulatus male Bft15b)
CGACGACGAGATTGGCCGCGAGGTAGATGGCATGGGGGGGAACAAGGGCG
AGGAGTACAAGGGCAACGTGTCGTGGGCTGAGGTACGTCGGGTAAAAAAG
CGAGCTAGGATTGGGATTGGCGAAGCCGCTCGTTTGTCCATTCGGTGGTT
GGATTGTGCGGCTGCCTGCTTCTCTTCAGTTTTCTGAATGAGCCCGACGA
AAGGTGGACGAACCAACCACAACGACCATTATCACTATTTACCACTTTTC
ACTGCCACCACCATCATGACTTGCTCCTGCAGATCATGATCTCACTTTCG
GCTATCGCGGCGTAATTTCAACCTCGACCTTACTGCTGCCATGTCAATCG
ACCGGGGCGATATGCACGGAGCAAGCAGAAGGACATACCTCCCGTGAAGC
GGGAGCGCGAGCAGAGACCGTTTGTTGGTGTATTCCTCTGACACATGCTC
TTTGAGTGTTATCATCTCATCCCGTATACCGTGCCCCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCATGA
ACGATCGGTTCGTGCCTCTGGTATGTGTGTCACGCCATCTGTTTCGCGCG
TCAGACTACGGTATATGTGGACGCATGGTTTCACAGAGAGAAGGGCCCGC
GGGAGTTTTTTTCCCCCACGGTCAATTTAGAATAGAAACGTGACCCGCCT
CGAAGTATGCGCGCTCTACCTAGCCATTTGTGGAGGCAAACATTGAATGA
CCCCCCCTTCCTCCCCCCCCCGCCTGTTGTAAATGCTTTGACGCCGAAGG
TGTTCGCGTACCGGAGGCCCGTGATGATCGGAGTATTGCTGATGCTGATT
CAGGTACGCCTTTCAGACACCAAGGTGTTACCATGGTTGCCACCAAACAC
CTGGAAATGCAACGCTATCACCCGTTCACCCCGTATGCTGTCATTCGGTG
ATCACAGCAGCTGACGATTTGGCGCACGCACAAGGTTGGGTCAGAGGGGG
AAAGACCCCGGGACCAAGTTGACCACCCCTAAGGTTGACACCAATAGTGG
CCACACTGCGCGCGGTTGCTCGCTTTACCCTGCCGGGGTAGTGCACGATA
TGGGGCAAAATCAATCTGTTGTCGCGTACAGCATGCCGCGTTTCCTTGTT
ACGTTTTCACCACCCTCACGCTGCACGCATCACGCACGCACACTCAGGCG
TTCACGGGAATCAACACGGTCGTCTTCTACTCGACGACCATCTTCGAGCT
GGCAGGCGTCGACAACACGGTAAGAGAACGGAAACGAGGACCTGTACAGC
AGTAGTCATCGGAAAAGTTCCGGTGTGTTTTTTCTTATGGTTCAGCGCGC
GACGGCTTGCTTGGTTTGGGTCTGAAGAACGGGAGGGCTGAACGTGCCAA
GAAGCAAAGTAGACAAGTATAGAGTTGGCTTAGGGTAAGGAATAAGGTTT
AAGGTTATGGCCCGAATCGCGATTGGGGTCGGGCGATATACCGCAATCAG
GGTTAGAGTCGAGAGCAACCAACCTTTCCAGAACGTGTCTAGAGCATGCC
CTGGTGCAATACATTCCGTGTCTAGTGAGAAACTGCTTTTCAAGGTGGCT
TCGGTCAGCTTCTTCTCGATGATGACGAATATTGGGTGTTCTCTGCGCCG
CGGCTCTACGTGCTAGCCGAGCACACGCGTAGGACTTGTATGACGCGAGA
GTGCTTGCGGGGCGGTCCAAACCTCGAACGGGTGTTCGTTTTGGCTTCAG
CAGCCCTCTCCCTTCTCGTGGCGCCCGATATCGCGAACTCTCGACCCAGG
ACAGCACGGCTTCGCCGCATCCCCGCGATGACGACTCTGCGCAGTCCGCA
CGCCGTCAGCCAGTTCGACGTTTTTCAATGAACTCGGTCCTTTTTTTTTT
TGCTTTGGCGTGACGGCGATAAGACACGAATCTCATCATTACTGCTTGAG
TTTCCCGGCAGTCGACGTGTGTGACACGGCGGACTGAGGTTTCTCTTCGT
CCGAGAACAAGGCGGGCTTTTTTTTCGACAGCGTGGCGTGCCGTTGATAC
TGAACACATAATTCGACCCATGAACGGTTTGTGTTATCGCCGTCGCCACC
ACCGCCGTCCTAACGTGCGGGGGCCAACTCGCACTGCCACAAAAAAATAT
ATATATATGTGCAGGTTTTGGCGACCGTTTCCGTGGGACTGACCCTCGTC
GTGATGACCTCCGTGTCCGGGAGCCTGGTCGACAAGGCCGGGCGGAGAAG
CCTCATGCTGATAGGCACGCTCGTCATGGCCCTCGCCCTGGCCATCCTGA
GCGGCTCGCTGCTTTGGCTCAACGCAACGCCTCGGGCGCAGGGATGTCTG
GTGAGCCACTGCTGTTGTCGACGTCGTTTTTCACGTTCGAAATGTTTTTT
TCATAGGCACGGCAATGTAGTACGATTAGTTGTTGTTTCTGTCGTGACTT
CAAAGTTGTGGTGTTGGCCTCTACTACCAAGCGATTCCGCATTCCGATGA
AAAACCGTGTGAGCTACTGTCGCCTGCTCATGGTGCCGCATGGGTTGGGA
TACTCGACTGCTGACCCTCATTTCTTTGCTCGGCTACGTATTGAGCGCGG
GGTCATTCCTCCTGTGCGTCCAGCGTCATACTTGAAGGCGGTCTTTTGCT
TCCGCTATGAAGGGCATGTGGGATATGGGGAAGGGACGCTAGCGAACAGG
GTTAATACTTTCGTTAGACCCTGTTGAACAACTCGAAGACCTACACCTTT
TCCCATCGCACCCTTATGTGCGTTCACGGGAAAGTGCGCCTGTTTCTTTC
GTCCCCTCTCGCTTTCCGGCTAGACATTTACTCGCCGCCACGCTTCGCTC
CGCCCCCCTCGCCCCTCCTAGTCTGCCCTTGATCATGCCCTCCTCTCCTT
TTTGCCGCGATTGCGATAATCGCTCTCTTCTGTATTTCTGAGCGTTTTCT
GTCGTTCCGTCTCCTTTCAGAACGTGTTTTCCTCTGTCTCTTTTGGTCTG
CATTTGATAGTATCACCCCCCCCTTTCCCCCCCTCTCTCGTCTCTTCGCG
ACATTCCTTCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTACGCAGCTGTCATCCGTACGCAAGGAAGT
AGGCACAAGATGCCAAACACCCTTAACAGGATGCAGCGCACCCTTCATGC
GACTCGCCGAATACCTAACGGTACCNGGGTTTTCGTCGCTTGGCAGCGAT
GTTGTATAACAAGCCGATCACTTCGTGAGCTCGGCAACCAGGTTACCGCT
TCATTTCCCTTCTTTGTTTCTTTTGCAGTAACCACAATGGTGGTCGAGTA
GATCATGTTGTGCGGAGTCGAGAACCCTCACTCCGCGCAAGGGGGATAAT
CGCACCACGTTGTGTCAAATTGGTCAAAGCACCCTCGAGGCAGTTACACA
GTGCTTACAACTGTCTCCGGAAGTAAAAGCACCAGAAAATAAATTTAGTC
ATACGCAGCTGTCATCCGTACGCAAGGAAGTAGGCACAAGATGCCAAACA
CCCTTAACAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATACCTAAC
GGTACCTCGCGCTTGGTGATGTGAGAGGCTGGTCCGGTGAGAACCCGGCG
TACTCCGTCCCAGCTGTAGGGCTGCGAGGTCAATGGTCTAACGAATACGG
CATGCACGACTATGAGTATGAGTATGAGAACACCCCCCCTCTCCCCTTCC
ATTCCTCTAGGCTGCTGGGTTGATTTACGTTGTGCTCCATCCCTGTAAGT
TAACCTGCTCTTGATCATTCTCTGCTTCTCTTCCTGCCTGCCCCCTCGTC
GCGACACTCATTCCCTTCTTATTGGTCGGTCTACTACATCTACATGACCC
CTTACAGGCGGTGGCTGCGACTCTCCTCTTTATCTCGGGTTTCTCCCTCG
GCCAGGGATCCGTCTGCTGGATCCTGCTCACGGAGATCGTCCCGTCCAGG
ATCCGCGCACAGGCGTTCTCCATCTTCACGGCCATCAACTGGCTATCGAA
CCTCTTCATCGGCCTCTTCACCCTCTCGGCGATAGACGCCATGGGAGAGT
GGTTGCTCCCGTCGTCGGGAGGCGGGTCGTCGTCGCCGTCCGCGAGGGAC
CAGCAGAAGGTCGGCGTCGCCGGGCTGTACGCCCTCTTCTGCGTCCTGAG
CGTGCTGGCGGTGGCATTTATCTACTTCTTCGTGCGCGAGACGATGGGGA
AGTCTCTCGAAGAGCTCGAGGAAGGAGGAGGCGGTGGTGGGTTGGCAGGC
GGGGGGAGCGCGGACCGGCTTGCGTTTGACATCGGGGGAGCACGCGAAGG
GCTTGGCGATGACAGCGATTCCACGAACGCCCTGTTGCAGCTGTCCGAGC
ACGGTGATGCCGATGATGAGGACGGAGAGGGTGCATGCCGAGTATTGATA
TAGTGTAGTGCTTGCGCGGGAATGTGCAACGTGCTTTATCTCATGATTGC
GGTATTTTTTGTTTTTTTACCCGTGCCGTGGGTGATAGATCGATCAATGA
ACAATAGTTAGTGGTGTGCGTTTTAGGGATTGTGCCGGTGACGGGGGTCG
TTGTAGGAGGCGACGACAACTCTGGACCGCTCTTGTCCGGAAGGAGGAGA
AGTACAGCGTACCCGGAGATAACCTACAAGAAGTCGGTTGTTTACCCAGG
ACCTTGGGAAGAACGCTTGCCGAAGAACATTC back to topCoding sequence (CDS) from alignment at Scaffold_235:104329..109610- >EsuBft321_8a-0001 ID=EsuBft321_8a-0001|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_235:104329..109610- (Ectocarpus subulatus male Bft15b)
ATGGGGGGGAACAAGGGCGAGGAGTACAAGGGCAACGTGTCGTGGGCTGA
GGTGTTCGCGTACCGGAGGCCCGTGATGATCGGAGTATTGCTGATGCTGA
TTCAGGCGTTCACGGGAATCAACACGGTCGTCTTCTACTCGACGACCATC
TTCGAGCTGGCAGGCGTCGACAACACGGTTTTGGCGACCGTTTCCGTGGG
ACTGACCCTCGTCGTGATGACCTCCGTGTCCGGGAGCCTGGTCGACAAGG
CCGGGCGGAGAAGCCTCATGCTGATAGGCACGCTCGTCATGGCCCTCGCC
CTGGCCATCCTGAGCGGCTCGCTGCTTTGGCTCAACGCAACGCCTCGGGC
GCAGGGATGTCTGGCGGTGGCTGCGACTCTCCTCTTTATCTCGGGTTTCT
CCCTCGGCCAGGGATCCGTCTGCTGGATCCTGCTCACGGAGATCGTCCCG
TCCAGGATCCGCGCACAGGCGTTCTCCATCTTCACGGCCATCAACTGGCT
ATCGAACCTCTTCATCGGCCTCTTCACCCTCTCGGCGATAGACGCCATGG
GAGAGTGGTTGCTCCCGTCGTCGGGAGGCGGGTCGTCGTCGCCGTCCGCG
AGGGACCAGCAGAAGGTCGGCGTCGCCGGGCTGTACGCCCTCTTCTGCGT
CCTGAGCGTGCTGGCGGTGGCATTTATCTACTTCTTCGTGCGCGAGACGA
TGGGGAAGTCTCTCGAAGAGCTCGAGGAAGGAGGAGGCGGTGGTGGGTTG
GCAGGCGGGGGGAGCGCGGACCGGCTTGCGTTTGACATCGGGGGAGCACG
CGAAGGGCTTGGCGATGACAGCGATTCCACGAACGCCCTGTTGCAGCTGT
CCGAGCACGGTGATGCCGATGATGAGGACGGAGAGGGTGCATGCCGAGTA
TTGATATAG back to top
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