EsuBft685_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft685_7a-0001
Unique NameEsuBft685_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:436674..437227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft685_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length26
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft685_7aEsuBft685_7aEctocarpus subulatus male Bft15bgeneScaffold_233 436674..437227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_7a-0001-exonagat-exon-7539Ectocarpus subulatus male Bft15bexonScaffold_233 436674..436701 +
EsuBft685_7a-0001-exonEsuBft685_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 436988..437227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_7a-0001-cdsEsuBft685_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 436674..436701 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_7a-0001-exonagat-three_prime_utr-20245Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 437074..437227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_7a-0001EsuBft685_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 436674..437073 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft685_7a-0001 ID=EsuBft685_7a-0001|Name=EsuBft685_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=268bp|location=Sequence derived from alignment at Scaffold_233:436674..437227+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCGACGCGCTGCAAAGCTCGTTTGCTAGAGCCATCTGAGGATCT
AATGAACACGCACACATATAACGAGAAAAAGGTATCATCGAAGAGCTCGA
AGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCGTTCGACTGCAGCAGTAGCATCACCCCCTC
CCTGTCCCACTCTATACCAAAACGGAAGATGGCCGACTACAGCATAATGC
TGTCTGAAGTGCTGTCTG
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protein sequence of EsuBft685_7a-0001

>EsuBft685_7 ID=EsuBft685_7|Name=EsuBft685_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=37bp
MKATRCKARLLEPSEDLMNTHTYNEKKVSSKSSKRYT
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mRNA from alignment at Scaffold_233:436674..437227+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft685_7a-0001 ID=EsuBft685_7a-0001|Name=EsuBft685_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=554bp|location=Sequence derived from alignment at Scaffold_233:436674..437227+ (Ectocarpus subulatus male Bft15b)
ATGAAAGCGACGCGCTGCAAAGCTCGTTGTAAGTAAACCATAATCGACTT
CGTAAGTCGCGCGGGAAGGGATTGCTGTACCCTTCTCGCGATTAAAATAC
CCCAGGCAGGAACCGCCGAAGGGAGGTCCAGCCCCCCCCTTCTATGTGAC
CCCGGTTGGGTCGTCTGGCTAGTAGAAGTGGAGGAAAGGGCCAGAGGGGC
AGACGACAGAGTCCAACGATTGTTGTTGTTGTTGTTGTTGTCTTCACATT
AAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGCAATGACTCTCAGCC
TGTGGTCACGACAGTGCTAGAGCCATCTGAGGATCTAATGAACACGCACA
CATATAACGAGAAAAAGGTATCATCGAAGAGCTCGAAGAGGTACACCTAA
AAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTCCGT
CCCACCGTTCGACTGCAGCAGTAGCATCACCCCCTCCCTGTCCCACTCTA
TACCAAAACGGAAGATGGCCGACTACAGCATAATGCTGTCTGAAGTGCTG
TCTG
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Coding sequence (CDS) from alignment at Scaffold_233:436674..437227+

>EsuBft685_7a-0001 ID=EsuBft685_7a-0001|Name=EsuBft685_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=114bp|location=Sequence derived from alignment at Scaffold_233:436674..437227+ (Ectocarpus subulatus male Bft15b)
ATGAAAGCGACGCGCTGCAAAGCTCGTTTGCTAGAGCCATCTGAGGATCT
AATGAACACGCACACATATAACGAGAAAAAGGTATCATCGAAGAGCTCGA
AGAGGTACACCTAA
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