EsuBft685_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft685_9a-0001
Unique Name	EsuBft685_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_233	contig	Scaffold_233:423597..425142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft685_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	101
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft685_9a	EsuBft685_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_233 423597..425142 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft685_9a-0001-exon	EsuBft685_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 423597..424044 +
EsuBft685_9a-0001-exon	agat-exon-7545	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 424462..424841 +
EsuBft685_9a-0001-exon	agat-exon-7546	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 424960..425142 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft685_9a-0001-cds	EsuBft685_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_233 423597..424044 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft685_9a-0001	EsuBft685_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_233 423597..425142 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:423597..425142+
coding sequence from alignment at Scaffold_233:423597..425142+

spliced messenger RNA

>EsuBft685_9a-0001 ID=EsuBft685_9a-0001|Name=EsuBft685_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1011bp|location=Sequence derived from alignment at Scaffold_233:423597..425142+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCCGAAGGAGGCGACGACCGGCTGGAGAGGCCGGCTGGCTCGGA
GTCAAGCCCGCGACCCAAAGACCAGCCCCGATCGCCGGCGGACGTCAGCC
TCATCGACACTCTCGTGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGAG
GATGAATACAGGGAAGTCCTTNTTTATCAAGGAGCAGGTCAAGATCAAAT
TGATGAAGCAGCAGCAGCAGAGCGCCCCGCAGCACAGAGCGAGGGCATGC
CTTCCGAAGGAGGCGACGACCGGCTGGAGAGGCCGGCTGGCTCGGAGTCA
AGCCCGCGACCCAAAGACCAGCCCCGATCGCCGGCGGACGTCAGCCTCAT
CGACACTCTCGTGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGAGGATG
AATACAGGGAAGTCCTTACCCCTAAAGAAACAATACGTATTAGCGCAGTA
CTTCGCCAGAAACTAGAAGCGTACGGTTGGGTGCAATCCGATCATGATGC
TAACGTCCACTATGTACGCAACCTTCTCCCGATCGATTTCAACGTGCAGA
GGAGCGTGTTGTTGGCACATTCGGAGGTCAAGACGGAATTGGTAGAGAAG
GTGATTCTGACTGCCTGGGCGGAGACGGAGGCCGCTAAGAAGAGGGCGTC
GGAGAGCGTGGGGCCGTATGCCCTCGTCACTGGCGGTGACAACCGTGGTG
GCGGGCGCGGGAACATGGGGGAGAGCGGGAAGACGAGAAGACAACGGAGG
ACGGCAGCGTGGCAACAGCAGCAACAACCGCAGCAGCCACAGCAGCAGCA
TCAGCCGTTCTTCAAGCAGCAGCAACAGGTGCGAGCTACGGCGGAAGGCA
CAGGCCCCAGCATGGGGGCCGGGGCTGTTCTGGAGGAGGACGTCATCAGC
AGCAGCCGACAGGAGGAAGATTCGGGGGGCGTGGCGCCGCTTCCGGTGGG
AGGGGCACGGGCCCTTTTCACCAGGAACCGCCGGGCAGCAACCTCCCCGC
CTACCCTGTAA

protein sequence of EsuBft685_9a-0001

>EsuBft685_9 ID=EsuBft685_9|Name=EsuBft685_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=336bp
MPSEGGDDRLERPAGSESSPRPKDQPRSPADVSLIDTLVRALQRVKIKPE
DEYREVLXYQGAGQDQIDEAAAAERPAAQSEGMPSEGGDDRLERPAGSES
SPRPKDQPRSPADVSLIDTLVRALQRVKIKPEDEYREVLTPKETIRISAV
LRQKLEAYGWVQSDHDANVHYVRNLLPIDFNVQRSVLLAHSEVKTELVEK
VILTAWAETEAAKKRASESVGPYALVTGGDNRGGGRGNMGESGKTRRQRR
TAAWQQQQQPQQPQQQHQPFFKQQQQVRATAEGTGPSMGAGAVLEEDVIS
SSRQEEDSGGVAPLPVGGARALFTRNRRAATSPPTL

mRNA from alignment at Scaffold_233:423597..425142+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft685_9a-0001 ID=EsuBft685_9a-0001|Name=EsuBft685_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1546bp|location=Sequence derived from alignment at Scaffold_233:423597..425142+ (Ectocarpus subulatus male Bft15b)
ATGCCTTCCGAAGGAGGCGACGACCGGCTGGAGAGGCCGGCTGGCTCGGA
GTCAAGCCCGCGACCCAAAGACCAGCCCCGATCGCCGGCGGACGTCAGCC
TCATCGACACTCTCGTGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGAG
GATGAATACAGGGAAGTCCTTNTTTATCAAGGAGCAGGTCAAGATCAAAT
TGATGAAGCAGCAGCAGCAGAGCGCCCCGCAGCACAGAGCGAGGGCATGC
CTTCCGAAGGAGGCGACGACCGGCTGGAGAGGCCGGCTGGCTCGGAGTCA
AGCCCGCGACCCAAAGACCAGCCCCGATCGCCGGCGGACGTCAGCCTCAT
CGACACTCTCGTGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGAGGATG
AATACAGGGAAGTCCTTACCCCTAAAGAAACAATACGTATTAGCGCAGGT
ATCACAATCCCTGCATTTACCGGGAAGTTTAGCCATTAGGACGATGTACA
AACGGCGGTAATGTTTTTTTCCAGTCAATTTCGATCTTTTTTGGAGCAGG
AGCGTTGCCTAGGGGCAATAGAATCGAAGAACACGATTTGTGTAGGGGAA
GACGGATGCGAATATCTCGGCATTGAAGGTGGAGCATGGGACGGAAGCTG
TAGATCGGGCGGTTAAGGCTTGGCAGCTGATTATATCCAAGATACAAGTA
CCGACAATAGTCCCTGCAATCCTAGCTAGTGGTCGCCCCACTGAATCGTG
GGATCAATTCCTCAACTTTTACCGAGTGCACGCCAGTTGGAGTTGCAGGG
GCAGTGGTACTCGTTGAAGCAGCAAGTAGGGTAGGAGCCCCGGCGCTATC
TCACAAGAGCATCAGTACTTCGCCAGAAACTAGAAGCGTACGGTTGGGTG
CAATCCGATCATGATGCTAACGTCCACTATGTACGCAACCTTCTCCCGAT
CGATTTCAACGTGCAGAGGAGCGTGTTGTTGGCACATTCGGAGGTCAAGA
CGGAATTGGTAGAGAAGGTGATTCTGACTGCCTGGGCGGAGACGGAGGCC
GCTAAGAAGAGGGCGTCGGAGAGCGTGGGGCCGTATGCCCTCGTCACTGG
CGGTGACAACCGTGGTGGCGGGCGCGGGAACATGGGGGAGAGCGGGAAGA
CGAGAAGACAACGGAGGACGGCAGCGTGGCAACAGCAGCAACAACCGCAG
CAGCCACAGCAGCAGCATCAGCCGTTCTTCAAGCAGCAGCAACAGGTATT
CCCGCCGCCGTACCCGCCTGAGATAAAATATTGTGACCTTCACAACTCCT
CGTCCCACAGCAACGAGGAATGTCGCTGGCAGCGGGGTTGGCGAGGTCCC
TCGGGCGGCCAAGGTGCGAGCTACGGCGGAAGGCACAGGCCCCAGCATGG
GGGCCGGGGCTGTTCTGGAGGAGGACGTCATCAGCAGCAGCCGACAGGAG
GAAGATTCGGGGGGCGTGGCGCCGCTTCCGGTGGGAGGGGCACGGGCCCT
TTTCACCAGGAACCGCCGGGCAGCAACCTCCCCGCCTACCCTGTAA

Coding sequence (CDS) from alignment at Scaffold_233:423597..425142+

>EsuBft685_9a-0001 ID=EsuBft685_9a-0001|Name=EsuBft685_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1011bp|location=Sequence derived from alignment at Scaffold_233:423597..425142+ (Ectocarpus subulatus male Bft15b)
ATGCCTTCCGAAGGAGGCGACGACCGGCTGGAGAGGCCGGCTGGCTCGGA
GTCAAGCCCGCGACCCAAAGACCAGCCCCGATCGCCGGCGGACGTCAGCC
TCATCGACACTCTCGTGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGAG
GATGAATACAGGGAAGTCCTTNTTTATCAAGGAGCAGGTCAAGATCAAAT
TGATGAAGCAGCAGCAGCAGAGCGCCCCGCAGCACAGAGCGAGGGCATGC
CTTCCGAAGGAGGCGACGACCGGCTGGAGAGGCCGGCTGGCTCGGAGTCA
AGCCCGCGACCCAAAGACCAGCCCCGATCGCCGGCGGACGTCAGCCTCAT
CGACACTCTCGTGCGGGCCTTGCAGAGGGTCAAGATAAAACCGGAGGATG
AATACAGGGAAGTCCTTACCCCTAAAGAAACAATACGTATTAGCGCAGTA
CTTCGCCAGAAACTAGAAGCGTACGGTTGGGTGCAATCCGATCATGATGC
TAACGTCCACTATGTACGCAACCTTCTCCCGATCGATTTCAACGTGCAGA
GGAGCGTGTTGTTGGCACATTCGGAGGTCAAGACGGAATTGGTAGAGAAG
GTGATTCTGACTGCCTGGGCGGAGACGGAGGCCGCTAAGAAGAGGGCGTC
GGAGAGCGTGGGGCCGTATGCCCTCGTCACTGGCGGTGACAACCGTGGTG
GCGGGCGCGGGAACATGGGGGAGAGCGGGAAGACGAGAAGACAACGGAGG
ACGGCAGCGTGGCAACAGCAGCAACAACCGCAGCAGCCACAGCAGCAGCA
TCAGCCGTTCTTCAAGCAGCAGCAACAGGTGCGAGCTACGGCGGAAGGCA
CAGGCCCCAGCATGGGGGCCGGGGCTGTTCTGGAGGAGGACGTCATCAGC
AGCAGCCGACAGGAGGAAGATTCGGGGGGCGTGGCGCCGCTTCCGGTGGG
AGGGGCACGGGCCCTTTTCACCAGGAACCGCCGGGCAGCAACCTCCCCGC
CTACCCTGTAA