EsuBft359_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft359_11a-0001
Unique Name	EsuBft359_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_233	contig	Scaffold_233:259856..262380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft359_11
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	218
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft359_11a	EsuBft359_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_233 259856..262380 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_11a-0001-exon	EsuBft359_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 259856..260536 +
EsuBft359_11a-0001-exon	agat-exon-31452	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 260875..262380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_11a-0001-cds	EsuBft359_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_233 259856..260443 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_11a-0001-exon	agat-three_prime_utr-13871	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_233 260444..260536 +
EsuBft359_11a-0001-exon	agat-three_prime_utr-13872	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_233 260875..262380 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_11a-0001	EsuBft359_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_233 259856..260443 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:259856..262380+
coding sequence from alignment at Scaffold_233:259856..262380+

spliced messenger RNA

>EsuBft359_11a-0001 ID=EsuBft359_11a-0001|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2187bp|location=Sequence derived from alignment at Scaffold_233:259856..262380+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAG
CTTCTGCCATCGCAGAAAATTCGTGTTCGAGGAATTTGATCTGCTCGTGT
TGTACCAGACCATGCCGAGGAGCGACAAAACATGCGAGGTCCCCCACTCG
TGCCACGAACCCTTACCGAGCGGCCGCGTTTCAGCAGGCCTTATGCATAT
TAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAGCT
TCTGCCATCGCAGTGCTGAAACGCGGTGGATGGTCGTGATGGACGGTGCC
AAGATCCTCTTTGAGCGCTGGGATGAGATCGCGTGGCTTTTTGGCGATTT
GGCGGCGTGCAACATCGGCAAAACCGCGTACAGAAATTACTGGCTAAAAT
TCGCGGTCGCGCTTGAAGACCCGCTGATCCTTGTGCAAGTGATTTTTGCG
GCACGTCTTGGAGAGCTTGTGTTCGACTGGGCGTACAACTGGATTCGTGG
CAAGGGGGGGTTCTTTCTGAAGGGCGAGGGAGTCGGTCGGCGACTGTTTC
CTGGGATGCGGCTGGTCGAGGTTGCTGACTTCTCGTGACTGCTGCTGCAA
AAAGTGGAGACTATCCGCAAGGAGCCCAACACCTATGTTCGGGTGCTGCT
CGAGCGCGTGGACGAGGGCAGCCTGAGCGAGGCGGAGAAGAAACACTTTA
TGGTGAACTTCAGCGAGGACAGGTTTTTTTTTGCGGAGTTCAAGATGCGG
TGGATCAAGTGGATGCAGCAGCATCAGGAGCTACCTTTGAGCATGGCGCG
GATTGGTTGCCCATCGTCTTACGCGCGGATGGGGATAATGGGGAAGGGGC
TGGTAGAGCAGGCGGTGGGGCCGGGGTATGCACGTGCATTTCTGCATATT
CGGTAGCCTGAACGATACGAGGGAGAGCCGCGCTCGGAGAGGGAGATAGA
GTACCGCGTGCAGCTCGGGAAAGATTTTGGGGGGGTCATCGACGCAAGGA
AGAAAGATGAGTTGACGTTTGGTCTTTTCTCGATTGTGGAGGAGGATGCA
GAAATGAGGTGTGAGGTAGAAGGATATGCGGAGTCTGGGTTTGGGGACAA
GGAGGTTGATGAGGAAGCAGAGAAGGGTACAACTGCGCTGGTGCGTCTTT
TCGAAAAATTCCCTCGCTTGTACAAGTTCGTGTGTGTGCGCTTCTACTTC
GTGCCTATTCACCAGCAGTTGATCGAGGCCATCTTTTCTAAGTACGACAC
GTGCGCAAAGAGAACGGACGTGGCTGTGATGGATTCCGTTCGGGTTGGGA
GTTGGCAAACCGAAGAGTCCAGAGATATCCCAAGCAGTGGTGCCACCGGC
AGTGAAATTCGTGCGGCCGGCACCAGGAGGCTGGCTGGGTGGAGAAAAGC
GAAGGCGGCGGCCCTCGCAGAACACCCAGCCGGAAACGCAAAGAGAAAGA
GAGTTTTGGATACGGAAACTGGGCGGGCGATGGTGGAAGAGATGAAGCGG
GAAGGGGGTTTGCCGACTCGGAGTGGTGTGCACGCTGACCAAACGTAGGT
GTGTTGTGTGTGACGTGGATTTTTGTCACCGGAAAAAAAAAAAACTCCGC
ACCAAAAATCATGTCGACTTTTTGTACCCTGCTGGGTGCGCCACCACCTT
CTGCATTCTGCGAAGGCTGCAGCCAGTTAGCTGCAGAGAGACACCGAGAG
AGCCGAGTATCGGTTGTGGTGTTCTGTCGCGTTGAAAACCATGCCATCAC
ACGTGTTTCATTATTGATGCCTGCTTATCATGCTGACACACACAAACTTC
GCGCGCAATTTGCGCCCCCAAGTTGAAGTTGAACTGCAGCACAAAACCGA
CGCAACTCACGCCGACCAAAAGCAATCCAGAACCCTGCCACGCCTGCAAG
AGCTATCACAGCACATCACAGCTCTCGATACAACCAGGCACGCAACCATC
TTCGCGAGAACCACGTGCATGCATAGCTGCAAGATGCATACCAAAACAAA
AAAAAGTCAGCTCTCCTCACAGCTTTCCTCCGAGCTCCCCCCCCCGTCCC
CTTCTTGTGCCTTCGTAGACAGCGTCCTTTCGCGACCACTCCTCCTCAGG
GTAGTGGCTGCTGCTGCAGTAGTAGGCGCCGTTGCTTTTCCTTTTCCCTT
GCCCTTTCCTTTCCCCCTCCGGTCGCCTGTCCGCCTT

protein sequence of EsuBft359_11a-0001

>EsuBft359_11 ID=EsuBft359_11|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MNFLVHGFAAGNSSATSFCHRRKFVFEEFDLLVLYQTMPRSDKTCEVPHS
CHEPLPSGRVSAGLMHINFLVHGFAAGNSSATSFCHRSAETRWMVVMDGA
KILFERWDEIAWLFGDLAACNIGKTAYRNYWLKFAVALEDPLILVQVIFA
ARLGELVFDWAYNWIRGKGGFFLKGEGVGRRLFPGMRLVEVADFS

mRNA from alignment at Scaffold_233:259856..262380+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft359_11a-0001 ID=EsuBft359_11a-0001|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2525bp|location=Sequence derived from alignment at Scaffold_233:259856..262380+ (Ectocarpus subulatus male Bft15b)
ATGAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAG
CTTCTGCCATCGCAGAAAATTCGTGTTCGAGGAATTTGATCTGCTCGTGT
TGTACCAGACCATGCCGAGGAGCGACAAAACATGCGAGGTCCCCCACTCG
TGCCACGAACCCTTACCGAGCGGCCGCGTTTCAGCAGGCCTTATGCATAT
TAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAGCT
TCTGCCATCGCAGTGCTGAAACGCGGTGGATGGTCGTGATGGACGGTGCC
AAGATCCTCTTTGAGCGCTGGGATGAGATCGCGTGGCTTTTTGGCGATTT
GGCGGCGTGCAACATCGGCAAAACCGCGTACAGAAATTACTGGCTAAAAT
TCGCGGTCGCGCTTGAAGACCCGCTGATCCTTGTGCAAGTGATTTTTGCG
GCACGTCTTGGAGAGCTTGTGTTCGACTGGGCGTACAACTGGATTCGTGG
CAAGGGGGGGTTCTTTCTGAAGGGCGAGGGAGTCGGTCGGCGACTGTTTC
CTGGGATGCGGCTGGTCGAGGTTGCTGACTTCTCGTGACTGCTGCTGCAA
AAAGTGGAGACTATCCGCAAGGAGCCCAACACCTATGTTCGGGTGCTGCT
CGAGCGCGTGGACGAGGGCAGCCTGAGCGAGGTAAGCGGCCAAGGGCCTG
AAAAGGTAGTTGGTTTCAAGCACATTGGGGTTTAGGTTGAACGCTGCCGC
ATTTTTCACTGCTACTTTACTGCTGCTGCTGCTGCTGCTGCTGCTGTACG
AATCGGCTTTGACACATGCATGTGCAAAATGTTCCCCGCCGCTGCCTCCC
GCCGTTTTTTTTTTTGCGGTGATTACGTGATGATTCGACGACACACATGC
CTTTTCTATCCTGTTAAATGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTG
CTATGATAGAGCGATGCCAATGCTTATCTTTCACCGCTTGAACTGCGCGC
ACTCGCTGCTGTGATAAAGGCGGAGAAGAAACACTTTATGGTGAACTTCA
GCGAGGACAGGTTTTTTTTTGCGGAGTTCAAGATGCGGTGGATCAAGTGG
ATGCAGCAGCATCAGGAGCTACCTTTGAGCATGGCGCGGATTGGTTGCCC
ATCGTCTTACGCGCGGATGGGGATAATGGGGAAGGGGCTGGTAGAGCAGG
CGGTGGGGCCGGGGTATGCACGTGCATTTCTGCATATTCGGTAGCCTGAA
CGATACGAGGGAGAGCCGCGCTCGGAGAGGGAGATAGAGTACCGCGTGCA
GCTCGGGAAAGATTTTGGGGGGGTCATCGACGCAAGGAAGAAAGATGAGT
TGACGTTTGGTCTTTTCTCGATTGTGGAGGAGGATGCAGAAATGAGGTGT
GAGGTAGAAGGATATGCGGAGTCTGGGTTTGGGGACAAGGAGGTTGATGA
GGAAGCAGAGAAGGGTACAACTGCGCTGGTGCGTCTTTTCGAAAAATTCC
CTCGCTTGTACAAGTTCGTGTGTGTGCGCTTCTACTTCGTGCCTATTCAC
CAGCAGTTGATCGAGGCCATCTTTTCTAAGTACGACACGTGCGCAAAGAG
AACGGACGTGGCTGTGATGGATTCCGTTCGGGTTGGGAGTTGGCAAACCG
AAGAGTCCAGAGATATCCCAAGCAGTGGTGCCACCGGCAGTGAAATTCGT
GCGGCCGGCACCAGGAGGCTGGCTGGGTGGAGAAAAGCGAAGGCGGCGGC
CCTCGCAGAACACCCAGCCGGAAACGCAAAGAGAAAGAGAGTTTTGGATA
CGGAAACTGGGCGGGCGATGGTGGAAGAGATGAAGCGGGAAGGGGGTTTG
CCGACTCGGAGTGGTGTGCACGCTGACCAAACGTAGGTGTGTTGTGTGTG
ACGTGGATTTTTGTCACCGGAAAAAAAAAAAACTCCGCACCAAAAATCAT
GTCGACTTTTTGTACCCTGCTGGGTGCGCCACCACCTTCTGCATTCTGCG
AAGGCTGCAGCCAGTTAGCTGCAGAGAGACACCGAGAGAGCCGAGTATCG
GTTGTGGTGTTCTGTCGCGTTGAAAACCATGCCATCACACGTGTTTCATT
ATTGATGCCTGCTTATCATGCTGACACACACAAACTTCGCGCGCAATTTG
CGCCCCCAAGTTGAAGTTGAACTGCAGCACAAAACCGACGCAACTCACGC
CGACCAAAAGCAATCCAGAACCCTGCCACGCCTGCAAGAGCTATCACAGC
ACATCACAGCTCTCGATACAACCAGGCACGCAACCATCTTCGCGAGAACC
ACGTGCATGCATAGCTGCAAGATGCATACCAAAACAAAAAAAAGTCAGCT
CTCCTCACAGCTTTCCTCCGAGCTCCCCCCCCCGTCCCCTTCTTGTGCCT
TCGTAGACAGCGTCCTTTCGCGACCACTCCTCCTCAGGGTAGTGGCTGCT
GCTGCAGTAGTAGGCGCCGTTGCTTTTCCTTTTCCCTTGCCCTTTCCTTT
CCCCCTCCGGTCGCCTGTCCGCCTT

Coding sequence (CDS) from alignment at Scaffold_233:259856..262380+

>EsuBft359_11a-0001 ID=EsuBft359_11a-0001|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_233:259856..262380+ (Ectocarpus subulatus male Bft15b)
ATGAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAG
CTTCTGCCATCGCAGAAAATTCGTGTTCGAGGAATTTGATCTGCTCGTGT
TGTACCAGACCATGCCGAGGAGCGACAAAACATGCGAGGTCCCCCACTCG
TGCCACGAACCCTTACCGAGCGGCCGCGTTTCAGCAGGCCTTATGCATAT
TAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAGCT
TCTGCCATCGCAGTGCTGAAACGCGGTGGATGGTCGTGATGGACGGTGCC
AAGATCCTCTTTGAGCGCTGGGATGAGATCGCGTGGCTTTTTGGCGATTT
GGCGGCGTGCAACATCGGCAAAACCGCGTACAGAAATTACTGGCTAAAAT
TCGCGGTCGCGCTTGAAGACCCGCTGATCCTTGTGCAAGTGATTTTTGCG
GCACGTCTTGGAGAGCTTGTGTTCGACTGGGCGTACAACTGGATTCGTGG
CAAGGGGGGGTTCTTTCTGAAGGGCGAGGGAGTCGGTCGGCGACTGTTTC
CTGGGATGCGGCTGGTCGAGGTTGCTGACTTCTCGTGA