EsuBft359_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft359_13a-0001
Unique NameEsuBft359_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:238290..238811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft359_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length52
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft359_13aEsuBft359_13aEctocarpus subulatus male Bft15bgeneScaffold_233 238290..238811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_13a-0001-exonEsuBft359_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 238290..238811 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_13a-0001-exonagat-five_prime_utr-8800Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 238290..238438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_13a-0001-cdsEsuBft359_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 238439..238600 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_13a-0001-exonagat-three_prime_utr-13874Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 238601..238811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_13a-0001EsuBft359_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 238439..238600 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft359_13a-0001 ID=EsuBft359_13a-0001|Name=EsuBft359_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=522bp|location=Sequence derived from alignment at Scaffold_233:238290..238811+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGACCAACCAATGAAATTGCACGGAATCGTCGGAACCTCCCGAAAAGAC
CCTCTGACGCACACGCGCGAGGGCGCGGCTCCCCTGTGTGCTTTGCGCCC
TGCTATCTGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACA
TGCCTCATGACACACCCCAGCAGCAGCCGGGCGGTGAAGCCACGCAGGCA
CCTGCCGCCGCCGTTGCTGCTGCTGAGAAAAACAGCAGCAGCAGCAGCGG
CGGCGGCGGCGGCGGCAGCGAGGTTGAGCCTGGCTCTCTTCCACAATTTT
CTTATTTTTGACCAACTCTTCTTTCGTTTCCTTCAGCGTTTTCTCTACGA
CGGTGAGGCTGCCGCGTTCGATAGCGCGCCGTGTGTTATCTTCTGCTGAC
GCGGCAACCATACACTGCCCCGTCCTCTCTTCAAACTTCTTTTTGTTTTG
ATTCAGCTTTCGGGCAGCGCGCCTCCTGCTGCCGAACGGCGCGGACCTCG
ATTTTTTTTTTGGGAGGGTCTG
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protein sequence of EsuBft359_13a-0001

>EsuBft359_13 ID=EsuBft359_13|Name=EsuBft359_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MPHDTPQQQPGGEATQAPAAAVAAAEKNSSSSSGGGGGGSEVEPGSLPQF
SYF
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mRNA from alignment at Scaffold_233:238290..238811+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft359_13a-0001 ID=EsuBft359_13a-0001|Name=EsuBft359_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=522bp|location=Sequence derived from alignment at Scaffold_233:238290..238811+ (Ectocarpus subulatus male Bft15b)
TTGACCAACCAATGAAATTGCACGGAATCGTCGGAACCTCCCGAAAAGAC
CCTCTGACGCACACGCGCGAGGGCGCGGCTCCCCTGTGTGCTTTGCGCCC
TGCTATCTGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACA
TGCCTCATGACACACCCCAGCAGCAGCCGGGCGGTGAAGCCACGCAGGCA
CCTGCCGCCGCCGTTGCTGCTGCTGAGAAAAACAGCAGCAGCAGCAGCGG
CGGCGGCGGCGGCGGCAGCGAGGTTGAGCCTGGCTCTCTTCCACAATTTT
CTTATTTTTGACCAACTCTTCTTTCGTTTCCTTCAGCGTTTTCTCTACGA
CGGTGAGGCTGCCGCGTTCGATAGCGCGCCGTGTGTTATCTTCTGCTGAC
GCGGCAACCATACACTGCCCCGTCCTCTCTTCAAACTTCTTTTTGTTTTG
ATTCAGCTTTCGGGCAGCGCGCCTCCTGCTGCCGAACGGCGCGGACCTCG
ATTTTTTTTTTGGGAGGGTCTG
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Coding sequence (CDS) from alignment at Scaffold_233:238290..238811+

>EsuBft359_13a-0001 ID=EsuBft359_13a-0001|Name=EsuBft359_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_233:238290..238811+ (Ectocarpus subulatus male Bft15b)
ATGCCTCATGACACACCCCAGCAGCAGCCGGGCGGTGAAGCCACGCAGGC
ACCTGCCGCCGCCGTTGCTGCTGCTGAGAAAAACAGCAGCAGCAGCAGCG
GCGGCGGCGGCGGCGGCAGCGAGGTTGAGCCTGGCTCTCTTCCACAATTT
TCTTATTTTTGA
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