EsuBft359_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft359_20a-0001
Unique NameEsuBft359_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:137008..139531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZS5
ProteomeIdEsuBft359_20
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length190
Hectar predicted targeting categoryother localisation
Evalue1.02e-65
EggNOG OGs2D16T@1|root,2SGXK@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft359_20aEsuBft359_20aEctocarpus subulatus male Bft15bgeneScaffold_233 137008..139531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_20a-0001EsuBft359_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 137008..139531 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_20a-0001-exonagat-exon-31482Ectocarpus subulatus male Bft15bexonScaffold_233 137008..137149 -
EsuBft359_20a-0001-exonagat-exon-31484Ectocarpus subulatus male Bft15bexonScaffold_233 137325..137770 -
EsuBft359_20a-0001-exonEsuBft359_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 137839..138652 -
EsuBft359_20a-0001-exonagat-exon-31485Ectocarpus subulatus male Bft15bexonScaffold_233 138970..139233 -
EsuBft359_20a-0001-exonagat-exon-31483Ectocarpus subulatus male Bft15bexonScaffold_233 139290..139531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_20a-0001-cdsEsuBft359_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 137008..137149 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft359_20a-0001 ID=EsuBft359_20a-0001|Name=EsuBft359_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1908bp|location=Sequence derived from alignment at Scaffold_233:137008..139531- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCACAGTCAAGCCGCAGCCGAAGTCGCCAAGGTCGAATCGAAGGC
AGTGCGGCGGTGGGTGAAGGAGTTTTGCAAGGGCGGCGCCTTCTTTGTCC
CCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCTTCATCGAAGACGAG
GACAAGCGCAACCACCTGAGGGAGTACATCGATCGCAAGCTGTATCGGCG
GAAGAAGGACGAGCCGCGCCTCCGAATCGCAGACGTGCACAAAATCCAAG
AAGGTGGGGCGAAAATGAACCACAGTCAAGCCGCAGCCGAAGTCGCCAAG
GTCGAATCGAAGGCAGTGCGGCGGTGGGTGAAGGAGTTTTGCAAGGGCGG
CGCCTTCTTTGTCCCCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCT
TCATCGAAGACGAGGACAAGCGCAACCACCTGAGGGAGTACATCGATCGC
AAGCTGTATCGGCGGAAGAAGGACGAGCCGCGCCTCCGAATCGCAGACGT
GCACAAGGATTGCGTGCGTGTTCGACGGCTCCAGCAGTGTCCGTGCGAGA
CGCGAAGGGACAAGGGAAGATGTTCGCACTTCGTGGCGTGTGAGTGCGAT
GACTGCAAGCGCAAGCCTGCCGTCGACTCCGCGCAGGTGGCGTTCGACAA
GCGCGACCTCACCTCCACGGACGGCAAGGGGGACTACCGCCTGCTGCCTG
ATCACCAGGTGCTGTCGCTTTACTTCCACGACGAAACCACTGCGAAGGAG
AACGACGATGGGGACCACCAATGGGTGTCGACGAAGAAAGGGGCCCCCAT
GAAAGTCAAGGGGGAGGGCCGCGCCGCACACATCTCGGACGTGATCGGCG
TCGACCTTGGCCAGCTGCAGATCAGCAAGGAGGCGTGGGGCATGATGCAG
GAGGACAAGGATGCCGAAACGGGGCGCTCCGGAAAGTACTTCGGCAGGAA
GGAGGGCGAGGGGGTACACGGTCACGAGGTGAAGGAGGTTCAAGACGCGG
TGGAAGTGCTGAAGACGGCTGCTGCAGATTGCGCGGTGTTGGAGACAGCC
AACGACCCTTGGACGGCAGCTGTCATCATGACCGTCGGGCAGCAACACGA
CCGCTACTGGACGAGCGATCGCATGTGCGCCCGACTGCCGGCGATCATCG
CCATGGTCGAGCTGACGAGTGGCCCGCACCGGCAGGATGTCCTCATCTTC
GACAACTCCACCGGGCACAACGCGTACGGCGAAGACGCGTTGTTGGCCCA
CAAGATCAACATGGCGCCGGGTGGCGAGAAGGGAGCGTTGAGGGTGTTCG
AAGATGACAACGGGAACACGGTGGAGAAGAAGCAGAAGGAGCGCAAGAAC
GGAACGGCACTCGACAAGAAGAAGTTTTCCGTCGGCACCAAGGTCGTGGC
TGGATCGCCGCTGCTTGGCGTCAACAAAGGAGCTGAGCAAATGCTCCGGG
AGATGGGGTTGTGGCGGCTTGGTGGCGAGAGGAAGGAGGGGCTGCTCCAG
ATTTGCAAGAAGTGCAAGGCGAACAACGCTGCGTCACGGCAAGAGATCAC
CGCTTTCAACAAAAGGGGGGGAGGAGAGGGAGAGGGTTCTAGAGCAAGCG
CGGCGGGAGCAGCAGAATTCTTCCACCGAGGGGCCCACTACAGCGGGAGG
GGCGGCTGGAACGCAACGCGGCAGCGGTGTTGTGCGTATCGGGTCTTCTC
CGACCTGAGGGCTTTGAAGGAGCAGCTTAACAAGGTCGAGGAGATCTTCA
AGAAGGCCGGCCACGCGGTGGCGTGGCTCTACGTTGAGGCTTACGACGAC
GGCCTGGAGGACTACCTCAAGGACCACGACCTCAAGGACTGGCACACCCA
CCGAGAAGCCTCTAAGCGGGGGGACGCCATCGTGGAGGCAGGGGGGGGGG
GGGGGNNN
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protein sequence of EsuBft359_20a-0001

>EsuBft359_20 ID=EsuBft359_20|Name=EsuBft359_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=636bp
MNHSQAAAEVAKVESKAVRRWVKEFCKGGAFFVPKRQYNKREPHSFIEDE
DKRNHLREYIDRKLYRRKKDEPRLRIADVHKIQEGGAKMNHSQAAAEVAK
VESKAVRRWVKEFCKGGAFFVPKRQYNKREPHSFIEDEDKRNHLREYIDR
KLYRRKKDEPRLRIADVHKDCVRVRRLQQCPCETRRDKGRCSHFVACECD
DCKRKPAVDSAQVAFDKRDLTSTDGKGDYRLLPDHQVLSLYFHDETTAKE
NDDGDHQWVSTKKGAPMKVKGEGRAAHISDVIGVDLGQLQISKEAWGMMQ
EDKDAETGRSGKYFGRKEGEGVHGHEVKEVQDAVEVLKTAAADCAVLETA
NDPWTAAVIMTVGQQHDRYWTSDRMCARLPAIIAMVELTSGPHRQDVLIF
DNSTGHNAYGEDALLAHKINMAPGGEKGALRVFEDDNGNTVEKKQKERKN
GTALDKKKFSVGTKVVAGSPLLGVNKGAEQMLREMGLWRLGGERKEGLLQ
ICKKCKANNAASRQEITAFNKRGGGEGEGSRASAAGAAEFFHRGAHYSGR
GGWNATRQRCCAYRVFSDLRALKEQLNKVEEIFKKAGHAVAWLYVEAYDD
GLEDYLKDHDLKDWHTHREASKRGDAIVEAGGGGGX
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mRNA from alignment at Scaffold_233:137008..139531-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft359_20a-0001 ID=EsuBft359_20a-0001|Name=EsuBft359_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2524bp|location=Sequence derived from alignment at Scaffold_233:137008..139531- (Ectocarpus subulatus male Bft15b)
ATGAACCACAGTCAAGCCGCAGCCGAAGTCGCCAAGGTCGAATCGAAGGC
AGTGCGGCGGTGGGTGAAGGAGTTTTGCAAGGGCGGCGCCTTCTTTGTCC
CCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCTTCATCGAAGACGAG
GACAAGCGCAACCACCTGAGGGAGTACATCGATCGCAAGCTGTATCGGCG
GAAGAAGGACGAGCCGCGCCTCCGAATCGCAGACGTGCACAAGTGAGTGT
GGTTGGAAGTGTNCGAAACGAATGACGCCCGTACCGCCCGTACGACAGAA
TCCAAGAAGGTGGGGCGAAAATGAACCACAGTCAAGCCGCAGCCGAAGTC
GCCAAGGTCGAATCGAAGGCAGTGCGGCGGTGGGTGAAGGAGTTTTGCAA
GGGCGGCGCCTTCTTTGTCCCCAAACGGCAGTACAACAAGCGGGAGCCGC
ACTCCTTCATCGAAGACGAGGACAAGCGCAACCACCTGAGGGAGTACATC
GATCGCAAGCTGTATCGGCGGAAGAAGGACGAGCCGCGCCTCCGAATCGC
AGACGTGCACAAGTGAGTGTGGTTGGAAGTGTGGGAAGCGGAAGGAGCAT
ATCAGTCGTTGGTAGAGGTAGGCACGCACGCGAAAATTTGTTTCGTTGCG
AGGCGTATACGGTTTGAGGCAGACGCTCCTACTGCGGTACTGCGGTGCGT
TTTTCTACCTAGAGTACCAGTAACGCTAGCCCCCTCCGGCTTTGATCCCC
CACNGAGGCGTACTACCGACCGAAGAAGGTGAAACGCGAGGAGCTTTTCT
GGCCAGCAGTGCGGACGATCGACGGCAAGGAGGAGTACAAGCACGTGCGC
GTCCACAACCCCGCGCACGCTCGCGGCAGGGATTGCGTGCGTGTTCGACG
GCTCCAGCAGTGTCCGTGCGAGACGCGAAGGGACAAGGGAAGATGTTCGC
ACTTCGTGGCGTGTGAGTGCGATGACTGCAAGCGCAAGCCTGCCGTCGAC
TCCGCGCAGGTGGCGTTCGACAAGCGCGACCTCACCTCCACGGACGGCAA
GGGGGACTACCGCCTGCTGCCTGATCACCAGGTGCTGTCGCTTTACTTCC
ACGACGAAACCACTGCGAAGGAGAACGACGATGGGGACCACCAATGGGTG
TCGACGAAGAAAGGGGCCCCCATGAAAGTCAAGGGGGAGGGCCGCGCCGC
ACACATCTCGGACGTGATCGGCGTCGACCTTGGCCAGCTGCAGATCAGCA
AGGAGGCGTGGGGCATGATGCAGGAGGACAAGGATGCCGAAACGGGGCGC
TCCGGAAAGTACTTCGGCAGGAAGGAGGGCGAGGGGGTACACGGTCACGA
GGTGAAGGAGGTTCAAGACGCGGTGGAAGTGCTGAAGACGGCTGCTGCAG
ATTGCGCGGTGTTGGAGACAGCCAACGACCCTTGGACGGCAGCTGTCATC
ATGACCGTCGGGCAGCAACACGACCGCTACTGGACGAGCGATCGCATGTG
CGCCCGACTGCCGGCGATCATCGCCATGGTCGAGCTGACGAGTGGCCCGC
ACCGGCAGGATGTCCTCATCTTCGACAACTCCACCGGGCACAACGCGTAC
GGCGAAGACGCGTTGTTGGCCCACAAGATCAACATGGCGCCGGGTGGCGA
GAAGGGAGCGTTGAGGGTGTTCGAAGATGACAACGGGAACACGGTGTGCC
CTACATTCGAGCTTGGTGACACTCTGCTCACCGACAGGAGATCTTCTTGC
CTAAGACGCAGGTGGAGAAGAAGCAGAAGGAGCGCAAGAACGGAACGGCA
CTCGACAAGAAGAAGTTTTCCGTCGGCACCAAGGTCGTGGCTGGATCGCC
GCTGCTTGGCGTCAACAAAGGAGCTGAGCAAATGCTCCGGGAGATGGGGT
TGTGGCGGCTTGGTGGCGAGAGGAAGGAGGGGCTGCTCCAGATTTGCAAG
AAGTGCAAGGCGAACAACGCTGCGTCACGGCAAGAGATCACCGCTTTCAA
CAAAAGGGGGGGAGGAGAGGGAGAGGGTTCTAGAGCAAGCGCGGCGGGAG
CAGCAGAATTCTTCCACCGAGGGGCCCACTACAGCGGGAGGGGCGGCTGG
AACGCAACGCGGCAGCGGTGTTGTGCGTATCGGGTCTTCTCCGACCTGAG
GGCTTTGAAGGAGCAGCTTAACAAGGTCGAGGAGATCTTCAAGAAGGCCG
GCCACGCGTGTGAATCTTCCTTCCCAAGTACCACCCTGAGCTCAACGCCA
TTGAGCGGTACTGGGGATACATCAAGCACGTTCTTCGTCTTCACTGCGAG
TACTCTCTCCCCCACATGTGTTCAAGATTCTGCCGGGCACAATGAGTGGC
GTGCCTTTGGGCCACACCCGCGCGTGGAGTAGGGTGGCGTGGCTCTACGT
TGAGGCTTACGACGACGGCCTGGAGGACTACCTCAAGGACCACGACCTCA
AGGACTGGCACACCCACCGAGAAGCCTCTAAGCGGGGGGACGCCATCGTG
GAGGCAGGGGGGGGGGGGGGGNNN
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Coding sequence (CDS) from alignment at Scaffold_233:137008..139531-

>EsuBft359_20a-0001 ID=EsuBft359_20a-0001|Name=EsuBft359_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1908bp|location=Sequence derived from alignment at Scaffold_233:137008..139531- (Ectocarpus subulatus male Bft15b)
ATGAACCACAGTCAAGCCGCAGCCGAAGTCGCCAAGGTCGAATCGAAGGC
AGTGCGGCGGTGGGTGAAGGAGTTTTGCAAGGGCGGCGCCTTCTTTGTCC
CCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCTTCATCGAAGACGAG
GACAAGCGCAACCACCTGAGGGAGTACATCGATCGCAAGCTGTATCGGCG
GAAGAAGGACGAGCCGCGCCTCCGAATCGCAGACGTGCACAAAATCCAAG
AAGGTGGGGCGAAAATGAACCACAGTCAAGCCGCAGCCGAAGTCGCCAAG
GTCGAATCGAAGGCAGTGCGGCGGTGGGTGAAGGAGTTTTGCAAGGGCGG
CGCCTTCTTTGTCCCCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCT
TCATCGAAGACGAGGACAAGCGCAACCACCTGAGGGAGTACATCGATCGC
AAGCTGTATCGGCGGAAGAAGGACGAGCCGCGCCTCCGAATCGCAGACGT
GCACAAGGATTGCGTGCGTGTTCGACGGCTCCAGCAGTGTCCGTGCGAGA
CGCGAAGGGACAAGGGAAGATGTTCGCACTTCGTGGCGTGTGAGTGCGAT
GACTGCAAGCGCAAGCCTGCCGTCGACTCCGCGCAGGTGGCGTTCGACAA
GCGCGACCTCACCTCCACGGACGGCAAGGGGGACTACCGCCTGCTGCCTG
ATCACCAGGTGCTGTCGCTTTACTTCCACGACGAAACCACTGCGAAGGAG
AACGACGATGGGGACCACCAATGGGTGTCGACGAAGAAAGGGGCCCCCAT
GAAAGTCAAGGGGGAGGGCCGCGCCGCACACATCTCGGACGTGATCGGCG
TCGACCTTGGCCAGCTGCAGATCAGCAAGGAGGCGTGGGGCATGATGCAG
GAGGACAAGGATGCCGAAACGGGGCGCTCCGGAAAGTACTTCGGCAGGAA
GGAGGGCGAGGGGGTACACGGTCACGAGGTGAAGGAGGTTCAAGACGCGG
TGGAAGTGCTGAAGACGGCTGCTGCAGATTGCGCGGTGTTGGAGACAGCC
AACGACCCTTGGACGGCAGCTGTCATCATGACCGTCGGGCAGCAACACGA
CCGCTACTGGACGAGCGATCGCATGTGCGCCCGACTGCCGGCGATCATCG
CCATGGTCGAGCTGACGAGTGGCCCGCACCGGCAGGATGTCCTCATCTTC
GACAACTCCACCGGGCACAACGCGTACGGCGAAGACGCGTTGTTGGCCCA
CAAGATCAACATGGCGCCGGGTGGCGAGAAGGGAGCGTTGAGGGTGTTCG
AAGATGACAACGGGAACACGGTGGAGAAGAAGCAGAAGGAGCGCAAGAAC
GGAACGGCACTCGACAAGAAGAAGTTTTCCGTCGGCACCAAGGTCGTGGC
TGGATCGCCGCTGCTTGGCGTCAACAAAGGAGCTGAGCAAATGCTCCGGG
AGATGGGGTTGTGGCGGCTTGGTGGCGAGAGGAAGGAGGGGCTGCTCCAG
ATTTGCAAGAAGTGCAAGGCGAACAACGCTGCGTCACGGCAAGAGATCAC
CGCTTTCAACAAAAGGGGGGGAGGAGAGGGAGAGGGTTCTAGAGCAAGCG
CGGCGGGAGCAGCAGAATTCTTCCACCGAGGGGCCCACTACAGCGGGAGG
GGCGGCTGGAACGCAACGCGGCAGCGGTGTTGTGCGTATCGGGTCTTCTC
CGACCTGAGGGCTTTGAAGGAGCAGCTTAACAAGGTCGAGGAGATCTTCA
AGAAGGCCGGCCACGCGGTGGCGTGGCTCTACGTTGAGGCTTACGACGAC
GGCCTGGAGGACTACCTCAAGGACCACGACCTCAAGGACTGGCACACCCA
CCGAGAAGCCTCTAAGCGGGGGGACGCCATCGTGGAGGCAGGGGGGGGGG
GGGGGNNN
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