EsuBft88_29a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft88_29a-0001
Unique NameEsuBft88_29a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_232contigScaffold_232:786171..790303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G204
ProteomeIdEsuBft88_29
Protein domainsIPR008580
Protein domainsPTHR12378
Ownerapollo_admin@sb-roscoff.fr
Note-like protein at4g17486 os:arabidopsis thaliana gn:at4g17486 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length975
Hectar predicted targeting categoryother localisation
Evalue1.16e-154
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-07_003470.1
Date last modified2016-06-13
Date creation2016-06-13
DescriptionLys63-specific deubiquitinase activity
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005737
GO0060027
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft88_29aEsuBft88_29aEctocarpus subulatus male Bft15bgeneScaffold_232 786171..790303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_29a-0001EsuBft88_29Ectocarpus subulatus male Bft15bpolypeptideScaffold_232 786215..790158 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_29a-0001-exonEsuBft88_29a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_232 786171..786244 +
EsuBft88_29a-0001-exonagat-exon-23282Ectocarpus subulatus male Bft15bexonScaffold_232 787607..787754 +
EsuBft88_29a-0001-exonagat-exon-23283Ectocarpus subulatus male Bft15bexonScaffold_232 788448..788660 +
EsuBft88_29a-0001-exonagat-exon-23284Ectocarpus subulatus male Bft15bexonScaffold_232 789009..789173 +
EsuBft88_29a-0001-exonagat-exon-23285Ectocarpus subulatus male Bft15bexonScaffold_232 789929..790303 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_29a-0001-exonagat-five_prime_utr-14726Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_232 786171..786214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_29a-0001-cdsEsuBft88_29a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_232 786215..786244 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_29a-0001-exonagat-three_prime_utr-22752Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_232 790159..790303 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft88_29a-0001 ID=EsuBft88_29a-0001|Name=EsuBft88_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=975bp|location=Sequence derived from alignment at Scaffold_232:786171..790303+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGACACTCTCCATTGCTGCCACAGCCTACACAGCATCACCATGTAC
GGCCGGAAAGGGAGACCGACAGAGGTCACGTTGAACGTGTACGACCTGAG
CCCCGTCAACGAGTTCGGGCACCCGATCGGGCTGGGGGTGTTCCACAGCG
GGCTGGAGGTAGACGGACGCGAGTACACCTTCGCGGGAGGGGGCGGGATC
TTCGACCATGAGCCCAGGAAAGCGCCTGGCGCGAGGTTCCGGGAGGCAGT
GAACATGGGGTCCTTCACCGGGGGGTCGAGCTCCCTCAGCCGGGCGATAG
ACTCGCTCCGAGAGGAGTTCGGTCCCCACCGCTACAACGTCCTGACGAGG
AACTGCAACACCTTCTCGTCCGCTCTGTGCGAGGAGCTGGTGGGGAAGCC
CATCCCGGGCTACGTGAACAGGCTGGCTTGGATGGGCTCTTGGTTCTCTT
GCCTGATGCCGCCGGGCATGCTGGGAGACGCGCCCGTTAACCAGGGCGGC
TCGTCGTCGTACAACGCGGGCTACTCGATGCTCGCACCCCCGGGGAGAAG
TAGCGGTACCGCCGCGGTTAGGGAGGGAGGGCCAAGAAACGCGTTCCAAG
GCTCGGGGATGATTCTCGCGGGGTCTGGAGGGAGTGCGGGGACAACAAGC
GGCAGCAGCACCGGAGGGGCGGGAACGGGCCGGGAGGGCGAGCTGTCAGA
CCGGAGGGAGCGGATGCGCATGGCGGCGTTGCGGCGGGCGGAGGCAGCAT
CGGCGTCGGCCGAAGCGGCTGCCGGGAACGGCGGTGGCGGCTGCGGCAGC
GCTGCCGCATCGAGTCTAAAGATGTCGTGACCACGTTAACCGTGTCATAA
TCAGAGACGTGGTTTGCTCGTGTGGTTTGTAGATGTGCCTTTATAGAGGT
GTCTCCTTCGTAGCAGTGATGTAGGTGTGAAAGCTGCTGTGGACGGCAAG
CGTCAGAGAAGTACGACCCCCCCCC
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protein sequence of EsuBft88_29a-0001

>EsuBft88_29 ID=EsuBft88_29|Name=EsuBft88_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=261bp
MYGRKGRPTEVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGG
GIFDHEPRKAPGARFREAVNMGSFTGGSSSLSRAIDSLREEFGPHRYNVL
TRNCNTFSSALCEELVGKPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNQ
GGSSSYNAGYSMLAPPGRSSGTAAVREGGPRNAFQGSGMILAGSGGSAGT
TSGSSTGGAGTGREGELSDRRERMRMAALRRAEAASASAEAAAGNGGGGC
GSAAASSLKMS
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mRNA from alignment at Scaffold_232:786171..790303+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft88_29a-0001 ID=EsuBft88_29a-0001|Name=EsuBft88_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4133bp|location=Sequence derived from alignment at Scaffold_232:786171..790303+ (Ectocarpus subulatus male Bft15b)
CAGCAGACACTCTCCATTGCTGCCACAGCCTACACAGCATCACCATGTAC
GGCCGGAAAGGGAGACCGACAGAGGTGGGTTGACGCACAGAGATTTAATG
TGTGCGATGTTCGTTCCCATCAACCCCATCGTTCGCGCCAAATACTCTGT
ACATAGCGCAATGATCAGCGGCAGGCGGCTTCTCCGAAATACACCCCCCT
TTCCGTCATGTGGTCAAGTTGCTCTGTGTGCTGCTCCTGTCGCGATGTGT
AGTGGACTGGGAGTACCAGATACTCGGCTTTCGAGTGGTAGCCGTGAGCA
GGGTGACGTCGTCCGCGTTCGGCTGACCCAGGCACTTACTGGGGTAGGAT
GTGCTGCTGCTGCCCTGTCTGCGGAGTTCTTTCGGTGCGGCGGCATCAAC
CCCGTTTGAACTATAACTTCAACCTATGCTGACTGCTGCTGCCGTTGGTT
GTCTCGTTGTCGTGGCATTAGTTTCGTAAAGACGCTCCCTTCAACTTCTG
ACATCTGGATTGGCTCAACTGATTAGGACTTCCGAAGAAGGTCGACGTAC
TTACAGCAGTACACATTAGAACAGCAGTCCCCCCGACAAACAGACTGGAC
AGCAGTGAAGGCAACAAGAGGCAACGAAGACTCTGCTAGCGGCTAGCGGC
CAGGTCCCACAGTCAAGCCGTGGGTCTGAACGTCTTATAACCCCTTCACA
ACAGGACGCACAGAGTTTTCTGAAAAGGTAAGGAAAAGACGGAAAGAATC
CTGCTGATTGGATGATGCGAACAGCTCCAGCCCTGGGTGCAAGGACAAAG
CTCGGTCGTCTCATTTCTGAAAGCCCTACAGCAGTAGTCTATCAAGTGGC
CTCTCGATAATCGAGGGGGCCATTTGACAGCGAGCAGTGTTAGTCCGCAA
TTCTAACCCCGGGTTCAGCTTGCTGGAAACACAACGTTAAAGAAAAAACA
GTACACTAGTGTACGCAGGTTTTCCAATAAGCAAACATACCGGATGAAGT
ATAGAGTCGGCTAAGTTGGGGTTGGTGATTTAGGGCTACGGTCTTGTTGT
TTCAATCAATCAAGGCGAGAGTTCCGTGGATCATGCTGTCCTAACTCGGG
GTCGGGGTGTCAACAAGAAAACACCAAAGGCCAAGACTCGGTCATACTCG
CAGCACGCAGGTGACATGCCGGATGGATAAGGGAAATCGATTGAGAATTG
AGAATTGGTGATCGATGCACAGAGCCTACACTTGCTCCCACTGGACACAC
CCACGAGGCCAGCCACAACGACAAGGATGTGTTGGAAAGTCTCTGCGGTA
TGTGGGAGAAGAGCCGGCCGGATGCTGAGCTTATTTTTGAGTCTACTTGT
AAGCCCAACAGCGAATCATTATCGGTGATGCCAGCTGGTGCTAAAATTTC
GTTTCTTGTTGCGCGCATTATTTTTTATCGCACAAGGTCACGTTGAACGT
GTACGACCTGAGCCCCGTCAACGAGTTCGGGCACCCGATCGGGCTGGGGG
TGTTCCACAGCGGGCTGGAGGTAGACGGACGCGAGTACACCTTCGCGGGA
GGGGGCGGGATCTTCGACCATGAGCCCAGGAAAGGTGCGTGGCATCTTGC
GAACGAAGAGGCACCTATATATTTAGAAAGAAAATGCTTAAAAGGAACAA
GACGATACACGGTATGGTCCGTGTGTACCAAGCTTTGTTCCCTCTCGCTT
GTTCTGCCTCTCTGCCTCTCTGCCTCAATAAGGGCATGCGTGACATCCAT
CCATCCTCTCCATATATACAAGCCTCTTTAGGCTAGAAGAAACAAGTGAC
CCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
TGCCCCCCCCCCCCGCCCCCCGAAACGTTTGGCCATCGGTGATCGGTCAA
CGAACTATTCTCCGTCCTCCTCTCGAAGACGCGTGGTCAATGGTCTAACA
ACCAAGGCATGAGCACGCCCTCCCCTCGCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNCCCCCCCCCCCCCCT
TCACTACCGCAACCCCTCGCTCCACAGCGCCTGGCGCGAGGTTCCGGGAG
GCAGTGAACATGGGGTCCTTCACCGGGGGGTCGAGCTCCCTCAGCCGGGC
GATAGACTCGCTCCGAGAGGAGTTCGGTCCCCACCGCTACAACGTCCTGA
CGAGGAACTGCAACACCTTCTCGTCCGCTCTGTGCGAGGAGCTGGTGGGG
AAGCCCATCCCGGGCTACGTGAACAGGCTGGCTTGGATGGGTGAGCAGAG
ATTGTTAAGTAGGGACGAGGTGGAGGAGCGGGCAGCTGCTCCTGGTGCGG
CTGCTGTGGGTTTAAGTAGAGACTGTGCACGCTTTCTTTCGCTGCTGACT
CGCTTTTTTATCTCTCTCTGTCTCTCTCTCTGTTGTTGGTTCTTTTGCGT
TCAATGCCGCTGGGATTGCCTGCCGCTGCATGTGTTCTTCCGAGCGGGTT
GTAGGGCACAGTGCTAGTGTACTCCGTAGGACTTACTGCCACCTCTCTCA
ACCGATTCTGTCGTTTCTGTACGCGTCCTCTTTGTCCATCTCTCTCTCTC
TCTTTCTCTCTCTCTCTTTCTCCCTCTCGTGCCGGCAGGCTCTTGGTTCT
CTTGCCTGATGCCGCCGGGCATGCTGGGAGACGCGCCCGTTAACCAGGGC
GGCTCGTCGTCGTACAACGCGGGCTACTCGATGCTCGCACCCCCGGGGAG
AAGTAGCGGTACCGCCGCGGTTAGGGAGGGAGGGCCAAGAAACGCGTTCC
AAGGTGCGTCTCGTCGTCGCGGGCACGGAATGTTTTCGTACAATGAAGTG
GATGCCTGCGGGATTTTGAAGACGACTAATGTAAGGTGGTTTTGTTTTGA
AGCGGGATGCATCGAGTCGGGAACAAAAGGTAAACGGCGGAAGTAGAGGA
GTAGAGCTATCGCGCGGAGGACACGGGGCTCGCTGTCATCGGGTGAAAGA
GGCGAGAGAGCTAGTCTCCGAACGGAGGAAAGCAACCAAAACCAGCAACT
GAAGCAGAATGAATCGATCACTTCCCCAGGGTGGGAAAGCGTGACGTGGT
TTGAAGAGCCTACTGCATGCATACCTGATACCCACCCTCACCGGGGGTTC
CGTAGTTGAGAATTTGACGGCCTTACGTGGACTAGCCCATGGTAATTGCG
GAACACTGATAAGATTTCGTACCTAGAATACTGTGCGGTTTACCTAATGG
TACAGGTTGCGGGCAAGCAGTACCGGAATACATACGATGGAACAAGTTCA
ACCTTGAAGGCACCCTGCGCCACAGAAGGAAGGTTGGGGCTCTCGAACTC
TCTGTAACCACGAGAGTCAGTTGTTTCGCTTTGCTCGACCTTTTTCGGTG
AGACTTTTTGTGTCTGCGTTGATTCCAAAGCACGAACAAAATCTTGGAGG
ATTTTTTCAAACCAAAGCCACTTGGGGCTTTTTCAACATGATGTCCAAGA
TCTTTCCATTTATTTTACATGCCTGTCGCTTTGTGCGCCCCCGTTCGCTC
GTTCTCAGGCTCGGGGATGATTCTCGCGGGGTCTGGAGGGAGTGCGGGGA
CAACAAGCGGCAGCAGCACCGGAGGGGCGGGAACGGGCCGGGAGGGCGAG
CTGTCAGACCGGAGGGAGCGGATGCGCATGGCGGCGTTGCGGCGGGCGGA
GGCAGCATCGGCGTCGGCCGAAGCGGCTGCCGGGAACGGCGGTGGCGGCT
GCGGCAGCGCTGCCGCATCGAGTCTAAAGATGTCGTGACCACGTTAACCG
TGTCATAATCAGAGACGTGGTTTGCTCGTGTGGTTTGTAGATGTGCCTTT
ATAGAGGTGTCTCCTTCGTAGCAGTGATGTAGGTGTGAAAGCTGCTGTGG
ACGGCAAGCGTCAGAGAAGTACGACCCCCCCCC
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Coding sequence (CDS) from alignment at Scaffold_232:786171..790303+

>EsuBft88_29a-0001 ID=EsuBft88_29a-0001|Name=EsuBft88_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=786bp|location=Sequence derived from alignment at Scaffold_232:786171..790303+ (Ectocarpus subulatus male Bft15b)
ATGTACGGCCGGAAAGGGAGACCGACAGAGGTCACGTTGAACGTGTACGA
CCTGAGCCCCGTCAACGAGTTCGGGCACCCGATCGGGCTGGGGGTGTTCC
ACAGCGGGCTGGAGGTAGACGGACGCGAGTACACCTTCGCGGGAGGGGGC
GGGATCTTCGACCATGAGCCCAGGAAAGCGCCTGGCGCGAGGTTCCGGGA
GGCAGTGAACATGGGGTCCTTCACCGGGGGGTCGAGCTCCCTCAGCCGGG
CGATAGACTCGCTCCGAGAGGAGTTCGGTCCCCACCGCTACAACGTCCTG
ACGAGGAACTGCAACACCTTCTCGTCCGCTCTGTGCGAGGAGCTGGTGGG
GAAGCCCATCCCGGGCTACGTGAACAGGCTGGCTTGGATGGGCTCTTGGT
TCTCTTGCCTGATGCCGCCGGGCATGCTGGGAGACGCGCCCGTTAACCAG
GGCGGCTCGTCGTCGTACAACGCGGGCTACTCGATGCTCGCACCCCCGGG
GAGAAGTAGCGGTACCGCCGCGGTTAGGGAGGGAGGGCCAAGAAACGCGT
TCCAAGGCTCGGGGATGATTCTCGCGGGGTCTGGAGGGAGTGCGGGGACA
ACAAGCGGCAGCAGCACCGGAGGGGCGGGAACGGGCCGGGAGGGCGAGCT
GTCAGACCGGAGGGAGCGGATGCGCATGGCGGCGTTGCGGCGGGCGGAGG
CAGCATCGGCGTCGGCCGAAGCGGCTGCCGGGAACGGCGGTGGCGGCTGC
GGCAGCGCTGCCGCATCGAGTCTAAAGATGTCGTGA
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