Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft748_9 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 117 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft748_9a-0001 ID=EsuBft748_9a-0001|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_230:456976..458152- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTGTTCTCCATCGCCTTCATCTCGCCGCCCCCCAGCTCGCCGGCCCC
TACCATCCCAGGCCAAATAATCGGTTTGCCGTTCAATACACGCCGAAATG
CATGCCCCGAAGAAGGCGATGTCGACGACGACGCGCGGGCGGTGGCTGGA
GCGATCTATGTACCTTCTGCGGCGGAATGCTGCTGCGACGACGAAGTGGC
GGCGGCGGCACTCCTCGCCGCGGAAGTCCTCGGGCCCGGCAGCTTGGCGG
CACCTGGCGAAGGCGAAAGCGGTCCATCGGCCTCGAAGGTCGGCGGCGAC
GGCAACGGCTCGGCAGCGGTAACGGCGGCGGGTAGCAGAGCGGCGGTAGT
CCTCGTCGCGGTCATCCTCGGGTCCGGCAGCGCGGCGGCACCCGGCGAGG
GTGCAAACGGCGCGCCGTCCCCGGGGTTTGGCGGCAGCGGCGACGGTGCG
GCGGCGGTGGCGGCTGCAGTCCATGGTGCACCACCAGCGGTGTTCGACGG
CAACGATGAAATGGCGTCGGCGGTCGCGGGTCCCCACGGTGCAGCCGCAG
CAGCGGTCGGCGAACCGGTGACAGTACCCCCCGCGGCGGCGGCGGCGACG
GCAGGCCAAGGCGCAGCGGTGGCAGCAGGCGGCGAAGCGGCGATGGTCGC
GGGTTCCGACTCCCTGGGGCGGGTGTTCCCTTGTTGCTTGGCAGTCAAAC
TCACAATAGGTTCGGGAAAGTGGCCAGCGCGGTGGTGGAAAACGTCAACA
TCCATTTGTTCGGCACGACCCAACACAGCCACATCACACTTAGACGCAAC
ACCTTCCCTCGCACCAAATATCGCCGTACTCGTCCCCGAGTCTCCCTGCA
ACTGCTCACCACCTTTGGGTGTTGACATCCTAGTGTGGCATACCGGGGCT
TGAAAAGTCACAGCAGGCTTCACTACAGGAACCACAGGAACATCAGGCAC
AGACATACCAGCGACGGGAACACCAGACACCACCCCATCACTAACAACTC
CAATCTCATTTCCAGACACAGAATCATCCTCGCCTAGAGAATTCACACTA
CGTGTGAGGAAGAGACGAAGAGGGGCGCCACTTGCTGGAGGAATGTCGCC
CGGAGGTGGAGAGGGGGTCGCCGTCGAGGAGGCAGAGGTCGTTGGAGTAG
CGCCGGTGTACTGCTGCTGCTGCTGCT back to topprotein sequence of EsuBft748_9a-0001 >EsuBft748_9 ID=EsuBft748_9|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MLFSIAFISPPPSSPAPTIPGQIIGLPFNTRRNACPEEGDVDDDARAVAG
AIYVPSAAECCCDDEVAAAALLAAEVLGPGSLAAPGEGESGPSASKVGGD
GNGSAAVTAAGSRAAVVLVAVILGSGSAAAPGEGANGAPSPGFGGSGDGA
AAVAAAVHGAPPAVFDGNDEMASAVAGPHGAAAAAVGEPVTVPPAAAAAT
AGQGAAVAAGGEAAMVAGSDSLGRVFPCCLAVKLTIGSGKWPARWWKTST
SICSARPNTATSHLDATPSLAPNIAVLVPESPCNCSPPLGVDILVWHTGA back to topmRNA from alignment at Scaffold_230:456976..458152- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft748_9a-0001 ID=EsuBft748_9a-0001|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_230:456976..458152- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCTCCATCGCCTTCATCTCGCCGCCCCCCAGCTCGCCGGCCCC
TACCATCCCAGGCCAAATAATCGGTTTGCCGTTCAATACACGCCGAAATG
CATGCCCCGAAGAAGGCGATGTCGACGACGACGCGCGGGCGGTGGCTGGA
GCGATCTATGTACCTTCTGCGGCGGAATGCTGCTGCGACGACGAAGTGGC
GGCGGCGGCACTCCTCGCCGCGGAAGTCCTCGGGCCCGGCAGCTTGGCGG
CACCTGGCGAAGGCGAAAGCGGTCCATCGGCCTCGAAGGTCGGCGGCGAC
GGCAACGGCTCGGCAGCGGTAACGGCGGCGGGTAGCAGAGCGGCGGTAGT
CCTCGTCGCGGTCATCCTCGGGTCCGGCAGCGCGGCGGCACCCGGCGAGG
GTGCAAACGGCGCGCCGTCCCCGGGGTTTGGCGGCAGCGGCGACGGTGCG
GCGGCGGTGGCGGCTGCAGTCCATGGTGCACCACCAGCGGTGTTCGACGG
CAACGATGAAATGGCGTCGGCGGTCGCGGGTCCCCACGGTGCAGCCGCAG
CAGCGGTCGGCGAACCGGTGACAGTACCCCCCGCGGCGGCGGCGGCGACG
GCAGGCCAAGGCGCAGCGGTGGCAGCAGGCGGCGAAGCGGCGATGGTCGC
GGGTTCCGACTCCCTGGGGCGGGTGTTCCCTTGTTGCTTGGCAGTCAAAC
TCACAATAGGTTCGGGAAAGTGGCCAGCGCGGTGGTGGAAAACGTCAACA
TCCATTTGTTCGGCACGACCCAACACAGCCACATCACACTTAGACGCAAC
ACCTTCCCTCGCACCAAATATCGCCGTACTCGTCCCCGAGTCTCCCTGCA
ACTGCTCACCACCTTTGGGTGTTGACATCCTAGTGTGGCATACCGGGGCT
TGAAAAGTCACAGCAGGCTTCACTACAGGAACCACAGGAACATCAGGCAC
AGACATACCAGCGACGGGAACACCAGACACCACCCCATCACTAACAACTC
CAATCTCATTTCCAGACACAGAATCATCCTCGCCTAGAGAATTCACACTA
CGTGTGAGGAAGAGACGAAGAGGGGCGCCACTTGCTGGAGGAATGTCGCC
CGGAGGTGGAGAGGGGGTCGCCGTCGAGGAGGCAGAGGTCGTTGGAGTAG
CGCCGGTGTACTGCTGCTGCTGCTGCT back to topCoding sequence (CDS) from alignment at Scaffold_230:456976..458152- >EsuBft748_9a-0001 ID=EsuBft748_9a-0001|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_230:456976..458152- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCTCCATCGCCTTCATCTCGCCGCCCCCCAGCTCGCCGGCCCC
TACCATCCCAGGCCAAATAATCGGTTTGCCGTTCAATACACGCCGAAATG
CATGCCCCGAAGAAGGCGATGTCGACGACGACGCGCGGGCGGTGGCTGGA
GCGATCTATGTACCTTCTGCGGCGGAATGCTGCTGCGACGACGAAGTGGC
GGCGGCGGCACTCCTCGCCGCGGAAGTCCTCGGGCCCGGCAGCTTGGCGG
CACCTGGCGAAGGCGAAAGCGGTCCATCGGCCTCGAAGGTCGGCGGCGAC
GGCAACGGCTCGGCAGCGGTAACGGCGGCGGGTAGCAGAGCGGCGGTAGT
CCTCGTCGCGGTCATCCTCGGGTCCGGCAGCGCGGCGGCACCCGGCGAGG
GTGCAAACGGCGCGCCGTCCCCGGGGTTTGGCGGCAGCGGCGACGGTGCG
GCGGCGGTGGCGGCTGCAGTCCATGGTGCACCACCAGCGGTGTTCGACGG
CAACGATGAAATGGCGTCGGCGGTCGCGGGTCCCCACGGTGCAGCCGCAG
CAGCGGTCGGCGAACCGGTGACAGTACCCCCCGCGGCGGCGGCGGCGACG
GCAGGCCAAGGCGCAGCGGTGGCAGCAGGCGGCGAAGCGGCGATGGTCGC
GGGTTCCGACTCCCTGGGGCGGGTGTTCCCTTGTTGCTTGGCAGTCAAAC
TCACAATAGGTTCGGGAAAGTGGCCAGCGCGGTGGTGGAAAACGTCAACA
TCCATTTGTTCGGCACGACCCAACACAGCCACATCACACTTAGACGCAAC
ACCTTCCCTCGCACCAAATATCGCCGTACTCGTCCCCGAGTCTCCCTGCA
ACTGCTCACCACCTTTGGGTGTTGACATCCTAGTGTGGCATACCGGGGCT
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