Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G4Z5 |
| ProteomeId | EsuBft748_7 |
| Protein domains | IPR001372 |
| Protein domains | SSF54648 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | dynein light chain cytoplasmic os:caenorhabditis elegans gn:dlc-1 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 904 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.69e-48 |
| EggNOG OGs | KOG3430@1|root,KOG3430@2759|Eukaryota |
| Ec32 ortholog description | Dynein light chain, type 1/2 |
| Ec32 ortholog | Ec-19_003050.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K10418 |
| KEGG Pathway | ko04962,map04962 |
| Description | positive regulation of ATP-dependent microtubule motor activity, plus-end-directed |
| COG category | S |
| BRITE | ko00000,ko00001,ko04812 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0051017 |
| GO | 0043086 |
| GO | 0034454 |
| GO | 0006809 |
| GO | 1900740 |
| GO | 0045505 |
| GO | 0007018 |
| GO | 0008022 |
| GO | 0040011 |
| GO | 0009792 |
| GO | 0044458 |
| GO | 0007291 |
| GO | 0007290 |
| GO | 0016459 |
| GO | 0072686 |
| GO | 0070062 |
| GO | 0006898 |
| GO | 0008039 |
| GO | 0003777 |
| GO | 0021762 |
| GO | 0019886 |
| GO | 0042623 |
| GO | 0008092 |
| GO | 0051959 |
| GO | 0048477 |
| GO | 0000132 |
| GO | 0030235 |
| GO | 0008407 |
| GO | 0005868 |
| GO | 0004857 |
| GO | 0002119 |
| GO | 0007476 |
| GO | 0000776 |
| GO | 0005829 |
| GO | 0042133 |
| GO | 0035046 |
| GO | 0006260 |
| GO | 0040035 |
| GO | 0019899 |
| GO | 0008180 |
| GO | 0019904 |
| GO | 0006914 |
| GO | 0097193 |
| GO | 0005930 |
| GO | 0055085 |
| GO | 0042803 |
| GO | 0035071 |
| GO | 0005814 |
| GO | 0040020 |
| GO | 0043652 |
| GO | 0042326 |
| GO | 0010171 |
| GO | 0042127 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft748_7a-0001 ID=EsuBft748_7a-0001|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_230:441664..443730- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGGATGACCATGGCGAGATGCGAGTCGATGCACAGAACTGGGCAGCAGCA
GCGATAGAGAGCAAAAGCGACGAAAAGGAGATATCAAGAGCTATAAAGTC
GAAGTTCGAGGTCAAGTACGGCCCAACATGGCACTGTATCGTTGGCACGG
ACTTCAAAGCTTTCGTCACGCACGAGAGCAAGCACTTCGTTTTCTTCTAC
CACGGGAAAATGGCTTTCTGTCTGTACAAAGCCGGATAGCCATTGTCGGG
GGAAACCAAAGTGATCCGTGCGGTCACGGCCGGGGCAAGAGCTACATTGC
CGGGCGAGAGGGGCGGGAAGTTACTTGGGGGGGCTGCTTGCCTAAGCGCA
AGGGTATAAATACGTCGCCCCTCCTTAGGACACCCGTGGTTTCGTCGCAA
CATGTATCCTTATTCAGCCGGGGTATAGTCCTTAAGACTCGTACCCCCCC
CTATGATTGTACATCCTGCGGAGCACCACCATGCCTGTGTAAAAAAAACG
TGTCTTCACCGATGGCTGCACCGCTGTTACTCTTTTTGTAAAAGAATATT
GGTGTGTTTGCGGCGTGTGTCCGGCCCAACCCTGGATTTCGTTGCCGTGC
TTCTTTGGCGGGTAGTACAATATGATCCATCCGGTCACAATACAACGTCG
AGAGCTTCCGACGTTTGGTTCATTGCAGAGATTTTCTGGCTTGGAAAGTT
GTTTCAAGGCTTGCTTGAGCCTATCCTGCTGTCTCTTTGAGTAGTCTCCA
TTATATTCTTTCTTGGTTATTGTTCTTGAAGCGGTATGCGAATCCCCACC
CCTACAATGCTTTCGTTCTGCAGCGAGATGTAGAAGCATTCGACGCAGGT
CGTCGTCGGTGGGAGGGTACCGACGTGGACGAAAGCAGCCTGCGTGTTTG
AATA back to topprotein sequence of EsuBft748_7a-0001 >EsuBft748_7 ID=EsuBft748_7|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFV
THESKHFVFFYHGKMAFCLYKAG back to topmRNA from alignment at Scaffold_230:441664..443730- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft748_7a-0001 ID=EsuBft748_7a-0001|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2067bp|location=Sequence derived from alignment at Scaffold_230:441664..443730- (Ectocarpus subulatus male Bft15b)
TGGATGACCATGGCGAGATGCGAGTCGATGCACAGAACTGGGCAGCAGCA
GCGATAGAGAGCAAAAGCGACGAAAAGGAGATATCAAGAGCTATAAAGGT
GTGCACCGTATCTACGGCCGAAGTATCGCAGTCGTCTCTCGCTACTGCTG
TCGACGCAAGCGGCTCCGGATAATCAGCTACCTGCGAAAATCATTCGCCG
AGAAGACAGGAGTATTCGTTCGAAACTTGCTGATTGGAGGGTGGCTCCTT
TCGTGGGGTTCGTCTGAACATCTGCTCACTCTACACCCCCTGACACCAGC
AACAGCACAGTATTAACGACCAAAAGGCATGCATTGTAGATATAAGGTGC
CACTGACATGGTTTGTTATGGCGTTACCACATGCTTTCGCAGCAAACTTT
TGGATTTCAACAATCTGATGACAAGCTTCGATATCAACGTACGGGTGAAC
AATGTGAAAATGCCTCCTATAAGCACGTCATGTGGGGTGCTACACACCTA
GGCAAGCGGGGGCTTCCCAGAAAGAAAGAAACAGAACGATGCAACATGTG
ACGCGTATGGTGAAGAAAGTTGCTGGTTCGACACTGATTCTCTGTTGAAT
CAATCTTAAATGGTTACGCGAGGCAGAGATTAGGAGGGATGGAAAGAGAC
AGAGAGAGAGGGGGAGGGAGGGAGAAATAAAAGATGGTCAATTTCCCCTA
CAGAAATAACGGTTGCTGTACTCACTTGGATATGATTGCTAGGCACAAAA
CGCTAAGAAGGAAGAAGCGAACATGTTGACAACATAGAATCAACGGCCCA
ATGTTGGCCGTATTTCTTGTATGTGGTAAAATGTCCACAGGACTAACAGA
ACGCGGGCGCTCCCTACCCCTGTGTAAATACCTGATCTACTGTAGTGTTA
CTCTCTTGTCTCTGTCAGCTGCCACATGCACACCCCAATGCCGGTCTCGA
CATGGAAACTACACTTGAGACATGGAAACCACACTTGATGTTATGTGGCA
TCGACGTGTACACCTTCGCAGAGCAGTTCAGTCTCACGTCACAGCCACCT
GTGGAGTTGCTACTCCAAGGGTCCGAGGGCACCATCAATGGCCTCTACAT
AGTCTATTGACCATCCCAAGAGCCAAGCTACTGTGCCAATATTTGAGGAA
TACCTAGCCTCGCGTTTTCAAAAAGGTGTGTACACCTTGCCTCTGCGTAT
TGGTTTCTTGGCCGTTTTCTTGAACGCTCGTCCCGCATTTGTTCAAAACC
CCTGCTGACAGTCGAAGTTCGAGGTCAAGTACGGCCCAACATGGCACTGT
ATCGTTGGCACGGACTTCAAAGCTTTCGTCACGCACGAGAGCAAGCACTT
CGTTTTCTTCTACCACGGGAAAATGGCTTTCTGTCTGTACAAAGCCGGAT
AGCCATTGTCGGGGGAAACCAAAGTGATCCGTGCGGTCACGGCCGGGGCA
AGAGCTACATTGCCGGGCGAGAGGGGCGGGAAGTTACTTGGGGGGGCTGC
TTGCCTAAGCGCAAGGGTATAAATACGTCGCCCCTCCTTAGGACACCCGT
GGTTTCGTCGCAACATGTATCCTTATTCAGCCGGGGTATAGTCCTTAAGA
CTCGTACCCCCCCCTATGATTGTACATCCTGCGGAGCACCACCATGCCTG
TGTAAAAAAAACGTGTCTTCACCGATGGCTGCACCGCTGTTACTCTTTTT
GTAAAAGAATATTGGTGTGTTTGCGGCGTGTGTCCGGCCCAACCCTGGAT
TTCGTTGCCGTGCTTCTTTGGCGGGTAGTACAATATGATCCATCCGGTCA
CAATACAACGTCGAGAGCTTCCGACGTTTGGTTCATTGCAGAGATTTTCT
GGCTTGGAAAGTTGTTTCAAGGCTTGCTTGAGCCTATCCTGCTGTCTCTT
TGAGTAGTCTCCATTATATTCTTTCTTGGTTATTGTTCTTGAAGCGGTAT
GCGAATCCCCACCCCTACAATGCTTTCGTTCTGCAGCGAGATGTAGAAGC
ATTCGACGCAGGTCGTCGTCGGTGGGAGGGTACCGACGTGGACGAAAGCA
GCCTGCGTGTTTGAATA back to topCoding sequence (CDS) from alignment at Scaffold_230:441664..443730- >EsuBft748_7a-0001 ID=EsuBft748_7a-0001|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_230:441664..443730- (Ectocarpus subulatus male Bft15b)
ATGCGAGTCGATGCACAGAACTGGGCAGCAGCAGCGATAGAGAGCAAAAG
CGACGAAAAGGAGATATCAAGAGCTATAAAGTCGAAGTTCGAGGTCAAGT
ACGGCCCAACATGGCACTGTATCGTTGGCACGGACTTCAAAGCTTTCGTC
ACGCACGAGAGCAAGCACTTCGTTTTCTTCTACCACGGGAAAATGGCTTT
CTGTCTGTACAAAGCCGGATAG back to top
|