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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZG5 |
| ProteomeId | EsuBft748_5 |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 92 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.48e-08 |
| EggNOG OGs | COG0319@1|root,2R6QZ@2759|Eukaryota |
| Ec32 ortholog description | Endoribonuclease YbeY |
| Ec32 ortholog | Ec-19_003220.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | YBEY |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464 |
| Description | metalloendopeptidase activity |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft748_5a-0001 ID=EsuBft748_5a-0001|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=928bp|location=Sequence derived from alignment at Scaffold_230:395329..396459+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACATAAAGCAGTTCAGACACACAGCTTCTTCCCCAGCGCGGCCACC
TGGCATCTGTTGCTGTCGCGCGCATCTTGCCAACCGTGCCGAGAATCACG
AGTGGACGTCGAACAAGAAGTCGAGAGCCGATTTTCCGTCCCTAGACGGT
CCGCTGCACAACCCTACTGCAACCGTCCGATTTCCTCCGTTTCCGCAACA
CCACGATCGACAACACCAGCAAGCTCGTCGCCATGCAGCAGGCCCGATCG
CTCGTCTTCGGGCTTCGACCGCCAACTTGCCGTGCCAGCAGCGTGCTCTC
CTTCACCCAGCCCGCCCGGCCTTGGATGTCCCAGCCGGCGTCTGCCCTGC
ACAGCTGTAGTAGGCATCACAGCGGCGGCTGCGGCACGTCGTCATCAAGG
CAGGCACCAAGGGCAGCAGATCCTGTCTCGCGCAACGGCGCCATGATGAG
CAGCACGGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGAAGCA
AGAGACTGCGGTGGGGAATGGCACTGGAATGTCCGGGTGCTTTCTCGGCA
GTGCCGAGGAGAGGTCGGCCTGCTGCTGCTGCTGCTGTGCCCCGCCGGCT
GCTTGGGCATCATGAAGCACGTATGTTCCTGATGGCTCCCTCCCGGAGAT
CCATGTCCACTGAAGCGGGCGGCGGCGGCGGGGTGGTAGAGGAAAGCGCT
CACGGCGAGAGCGAGGTCGAAGACGACGAGGGCGGAGACGGGCTTCTTGC
CGCGCTGGCGGACGAGCTAGTCTGGGAAGGGGATGACGACGAAGGGGAGG
GAGATGATGGGGAGGAGGACGAAGCTGGGATGGAGGGATTGGATCTCGAG
AGCTTGGGGATATCCATCATGGGTTCGTTTACGCAAGAGCCGAGATCGGT
GCCTCAGATCTTCCCCGCGATGCGATAG back to topprotein sequence of EsuBft748_5a-0001 >EsuBft748_5 ID=EsuBft748_5|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MQQARSLVFGLRPPTCRASSVLSFTQPARPWMSQPASALHSCSRHHSGGC
GTSSSRQAPRAADPVSRNGAMMSSTDSSSSSSSSSRSRSKRLRWGMALEC
PGAFSAVPRRGRPAAAAAVPRRLLGHHEARMFLMAPSRRSMSTEAGGGGG
VVEESAHGESEVEDDEGGDGLLAALADELVWEGDDDEGEGDDGEEDEAGM
EGLDLESLGISIMGSFTQEPRSVPQIFPAMR back to topmRNA from alignment at Scaffold_230:395329..396459+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft748_5a-0001 ID=EsuBft748_5a-0001|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_230:395329..396459+ (Ectocarpus subulatus male Bft15b)
ATGAACATAAAGCAGTTCAGACACACAGCTTCTTCCCCAGCGCGGCCACC
TGGCATCTGTTGCTGTCGCGCGCATCTTGCCAACCGTGCCGAGAATCACG
AGTGGACGTCGAACAAGAAGTCGAGAGCCGATTTTCCGTCCCTAGACGGT
CCGCTGCACAACCCTACTGCAACCGTCCGATTTCCTCCGTTTCCGCAACA
CCACGATCGACAACACCAGCAAGCTCGTCGCCATGCAGCAGGCCCGATCG
CTCGTCTTCGGGCTTCGACCGCCAACTTGCCGTGCCAGCAGCGTGCTCTC
CTTCACCCAGCCCGCCCGGCCTTGGATGTCCCAGCCGGCGTCTGCCCTGC
ACAGCTGTAGTAGGCATCACAGCGGCGGCTGCGGCACGTCGTCATCAAGG
CAGGCACCAAGGGCAGCAGATCCTGTCTCGCGCAACGGCGCCATGATGAG
CAGCACGGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGAAGCA
AGAGACTGCGGTGGGGAATGGCACTGGAATGTCCGGGTGCTTTCTCGGCA
GTGCCGAGGAGAGGTCGGCCTGCTGCTGCTGCTGCTGTGCCCCGCCGGCT
GCTTGGGCATCATGAAGCACGTATGTTCCTGATGGCTCCCTCCCGGAGAT
CCATGTCCACTGAAGCGGGCGGCGGCGGCGGGGTGGTAGAGGAAAGCGCT
CACGGCGAGAGCGAGGTCGAAGACGACGAGGGCGGAGACGGGCTTCTTGC
CGCGCTGGCGGACGAGCTAGTCTGGGAAGGGGATGACGACGAAGGGGAGG
GAGATGATGGGGAGGAGGACGAAGCTGGGATGGAGGGATTGGATCTCGAG
AGCTTGGGGATATCCATCATGGTCAGTTCGCGCGATGTTCGAGGTGTTAG
GAATTCACATCCAATCAAAGAAAGACTGCCCGCTCTAGATATAACCACAG
CAGTAGTCGAAGGGAGTGGTTTGAAGTTCTTTTCGGTGAATGTTGGTGTT
GTTTTGGAGCGTGGACTCCGGCTGTGTTGGTACTTGTATGCATGCGTGTG
GCACACCGAGGGCAAAAGACACAGGGTTCGTTTACGCAAGAGCCGAGATC
GGTGCCTCAGATCTTCCCCGCGATGCGATAG back to topCoding sequence (CDS) from alignment at Scaffold_230:395329..396459+ >EsuBft748_5a-0001 ID=EsuBft748_5a-0001|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_230:395329..396459+ (Ectocarpus subulatus male Bft15b)
ATGCAGCAGGCCCGATCGCTCGTCTTCGGGCTTCGACCGCCAACTTGCCG
TGCCAGCAGCGTGCTCTCCTTCACCCAGCCCGCCCGGCCTTGGATGTCCC
AGCCGGCGTCTGCCCTGCACAGCTGTAGTAGGCATCACAGCGGCGGCTGC
GGCACGTCGTCATCAAGGCAGGCACCAAGGGCAGCAGATCCTGTCTCGCG
CAACGGCGCCATGATGAGCAGCACGGATAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAAGCAGAAGCAAGAGACTGCGGTGGGGAATGGCACTGGAATGT
CCGGGTGCTTTCTCGGCAGTGCCGAGGAGAGGTCGGCCTGCTGCTGCTGC
TGCTGTGCCCCGCCGGCTGCTTGGGCATCATGAAGCACGTATGTTCCTGA
TGGCTCCCTCCCGGAGATCCATGTCCACTGAAGCGGGCGGCGGCGGCGGG
GTGGTAGAGGAAAGCGCTCACGGCGAGAGCGAGGTCGAAGACGACGAGGG
CGGAGACGGGCTTCTTGCCGCGCTGGCGGACGAGCTAGTCTGGGAAGGGG
ATGACGACGAAGGGGAGGGAGATGATGGGGAGGAGGACGAAGCTGGGATG
GAGGGATTGGATCTCGAGAGCTTGGGGATATCCATCATGGGTTCGTTTAC
GCAAGAGCCGAGATCGGTGCCTCAGATCTTCCCCGCGATGCGATAG back to top
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