EsuBft811_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_8a-0001
Unique NameEsuBft811_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:340175..342856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT55
ProteomeIdEsuBft811_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length155
Hectar predicted targeting categorysignal peptide
Evalue1.9e-83
EggNOG OGs2E0FN@1|root,2S7W7@2759|Eukaryota
Ec32 ortholog descriptionimm downregulated 17
Ec32 orthologEc-19_003550.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_8aEsuBft811_8aEctocarpus subulatus male Bft15bgeneScaffold_230 340175..342856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_8a-0001EsuBft811_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 341186..342856 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_8a-0001-exonagat-exon-27551Ectocarpus subulatus male Bft15bexonScaffold_230 340175..341309 -
EsuBft811_8a-0001-exonagat-exon-27552Ectocarpus subulatus male Bft15bexonScaffold_230 341585..341653 -
EsuBft811_8a-0001-exonagat-exon-27550Ectocarpus subulatus male Bft15bexonScaffold_230 341988..342098 -
EsuBft811_8a-0001-exonEsuBft811_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 342362..342498 -
EsuBft811_8a-0001-exonagat-exon-27553Ectocarpus subulatus male Bft15bexonScaffold_230 342755..342856 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_8a-0001-exonagat-three_prime_utr-21829Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 340175..341185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_8a-0001-cdsEsuBft811_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 341186..341309 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_8a-0001 ID=EsuBft811_8a-0001|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1554bp|location=Sequence derived from alignment at Scaffold_230:340175..342856- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGTCACTCTTCACGATGTTCGCTCTATCGCTGCTGCTCGCCCT
AGCTGTCTCCTCTGCTTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATCTAGAAGTAGCGAAACTCCTCGACGACACGTGCGAATGGGACACCTAC
ATGTGCTGCTTTACCAACCACGACTCAGGAGAGGGGGTGACCGCGAACAC
CGATGTTTGCAGCGTACCGAACGAGGGTTCCGTGTACTGCCACGGCTTCG
CCTGGCCGGATGGCGCAGATGTGAACAACCACATCCTTCCCCTGTACCAC
TATGTGAAGAACATTGGCCGCACCGAAGAAGAGGGGGGTTACTACGGAAG
CGTGGAGGGAGCGCCGGAATGCGGGTGTATCGAGGAAATGCCTCAAGTTT
CTTTCGCGGAGTGCTCCAGGTTCGATATCGACGGGATCGTTGGGTGCGGA
GAAGGCGGGCTTTACAGCCAATACAACGGCCGCCTGGGCGCGCCCTACGG
TGAGATGGAACACAACCTGGTGAGGTCTTGCGACAATGCCTAACTGCACG
ACAAGGCAGAGGGCCGGGAGGGCAAGTTCAAGGCGTGCACGAACAACAAC
CTCCGTTACCGCTACGAGGAGTGTACCCTGTGGGGAAGCTCGACAACCTC
GGCGGCGGTGACTGCGACAACGCCTAGTCGAACCCGGTCCATGGGAGGAG
ACTGGGATTGTTTTGTTGTTGCGACTGGGAATACTAGGAGTAGGCAGGAT
TGAGGACTAGGGTCTCTCATAGATGCGAGCATCGGGACTTTGATGAGCAT
GCTGGTACCGTTAGAGAATTGGGTCTTCCTGGTTGTGCATGTGGAGTGGC
GCGAGTCCATTGGAAGTCTACACAGCGAAAAATATTTCCACGATATGGTG
CAGATACATGGAATACCGTGGTCTCCGGTGGAGTTTTCTGGACATCCATG
GCCTTCTTGCTATTTGCAGTTGGGTGAAATCGCGTGGGTCGCGACCGCAT
CTTAACGGGTGCCCATGGTACGAGACTGAGTCGAAATTGGTCTCTTTGCA
CGGCGGTAGGATGTGGTCGACGGATTTCGTTTCCGCAGTATTTTACCGAG
GCTATGGTAACAAATGTAAATTATAGGCCCTAAATCATATCCTTGTTCGG
GAGCAATTAGTTCTTGCGCTCGTTGCTCTCTGATCGTGTTCGATTTGTTC
GTTGGTGTTTTCACTTTTGAACGATTTTGTGGTGCGTGTTTTTTCTTGTA
TGGTGGTCGGGAACTGCTGTCGTCAGTTTTGGGGTAACATAAGAAGCTAT
TTGTAGCATCCGCTTTGCACAATTCCAATGCGTACAGGATCGCAACATTT
CGTTCTGTATGCAGACCAGAGGTGTGGGACTTACGAAGACCAAATGTCTA
TAGGACGTTTTCTGGATTTACAAGGCCGTGCAATCATTTGGATGAGCTTG
CACGTTCGATATTCCTGTGATGTCAGGTGCTTTCTGTCGATATACATTTG
TTGAGCGTTGCCGGTTATGACGGGTTGGCACGATAGTCTTCCTTGAAAAA
TAAG
back to top

protein sequence of EsuBft811_8a-0001

>EsuBft811_8 ID=EsuBft811_8|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MNKSLFTMFALSLLLALAVSSASDGGSCTTYDEDLEVAKLLDDTCEWDTY
MCCFTNHDSGEGVTANTDVCSVPNEGSVYCHGFAWPDGADVNNHILPLYH
YVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCG
EGGLYSQYNGRLGAPYGEMEHNLVRSCDNA
back to top

mRNA from alignment at Scaffold_230:340175..342856-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_8a-0001 ID=EsuBft811_8a-0001|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2682bp|location=Sequence derived from alignment at Scaffold_230:340175..342856- (Ectocarpus subulatus male Bft15b)
ATGAACAAGTCACTCTTCACGATGTTCGCTCTATCGCTGCTGCTCGCCCT
AGCTGTCTCCTCTGCTTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATGTGAGATTGCGAACGAACTGCGCTTACAAGAATAGGGAACTGTGAGGA
GACTGTGGTCTGTGCGCGTTGCGATACGAGTACGTGTACCACTCGAGTTT
TGAAATTTTACGCATGACTACACGCACTAGTATTGCACGCGCGCCACGCT
CGCTATCACTGGTCCATATCACTGGTCCACGCACGCACGCGCCAGCAGTG
TCGAACATGATCTAAGACTCACGTTTGTGTGTTCCATCTTGTGCTTGACC
GTTTTCAGCTAGAAGTAGCGAAACTCCTCGACGACACGTGCGAATGGGAC
ACCTACATGTGCTGCTTTACCAACCACGACTCAGGAGAGGGGGTGACCGC
GAACACCGATGTTTGCAGCGTACCGAACGAGGGTTCCGTGTACTGGTGAG
TCCGTACAAGTCTTGGGTATATAATCGCCTCATTTCATCTCGACTGCTGC
AGTAGAGAAACAAAACATACACCTTACTTTGCTCGCCTCCTGCTGTAGTA
CTGAACGTCGATATTGGAACAGGGCAGTAGCCGTAGCGTTCAACAACACT
CCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCCCCCCCCTACTCCCGCACCTCCGTGTTGATGTAATC
AATGACAGCCACGGCTTCGCCTGGCCGGATGGCGCAGATGTGAACAACCA
CATCCTTCCCCTGTACCACTATGTGAAGAACATTGGCCGCACCGAAGAAG
AGGGGGGTTACTACGGAAGGTGAGTCTGTTTCTTGGGGACACACCTACAC
AGCATTAGCGCTGCTATTACTGTCAAGTTGCAATGCTTGCATGGTCGACA
ACGTAAGCGTTTTGTGGCAGGAGGTTCCTACAGCATTGATCATTTGGAAT
GGAAGAGCGATGACCACGTCGCCGCGGCAACCGTAGGCCGTGGTCGAGTC
TTTCTGCTTGATGTACCCACGGTGGACGTGCATGGCTCCTGTTCCATCTT
TCAATCCTGGCCGTTCACGATACATGTCTGCATTCGCCTGACGCTAGATC
CCTTTCCTCCAATGTGTGCCGTTTCGCTTTGGTCCTCCGTCATGGCATCA
CAGCGTGGAGGGAGCGCCGGAATGCGGGTGTATCGAGGAAATGCCTCAAG
TTTCTTTCGCGGAGTGCTCCAGGTACGTTATGGGATTTCAACCGCATGTT
TGTGGCGGCGGTCGAGGCAAATCCCGCCGACTTTTTACGATTTGACTCGT
ATATTATCCAGGTTTTTTGTTTGACTACTGTGATGTCGTTGTGAACGACC
GTCGTTGTGGAGTTGAATTGAAATGCCTACAGTAGTTGCATATACGAAAT
TTGGTTGCGGTTGAAGCGTACACACCCGCTTTTCAACAGCTAGTGGAACA
TATTGTGACCTTCGACATGACCCTTTCCCTTGCCTTCTTATTGCCAGGTT
CGATATCGACGGGATCGTTGGGTGCGGAGAAGGCGGGCTTTACAGCCAAT
ACAACGGCCGCCTGGGCGCGCCCTACGGTGAGATGGAACACAACCTGGTG
AGGTCTTGCGACAATGCCTAACTGCACGACAAGGCAGAGGGCCGGGAGGG
CAAGTTCAAGGCGTGCACGAACAACAACCTCCGTTACCGCTACGAGGAGT
GTACCCTGTGGGGAAGCTCGACAACCTCGGCGGCGGTGACTGCGACAACG
CCTAGTCGAACCCGGTCCATGGGAGGAGACTGGGATTGTTTTGTTGTTGC
GACTGGGAATACTAGGAGTAGGCAGGATTGAGGACTAGGGTCTCTCATAG
ATGCGAGCATCGGGACTTTGATGAGCATGCTGGTACCGTTAGAGAATTGG
GTCTTCCTGGTTGTGCATGTGGAGTGGCGCGAGTCCATTGGAAGTCTACA
CAGCGAAAAATATTTCCACGATATGGTGCAGATACATGGAATACCGTGGT
CTCCGGTGGAGTTTTCTGGACATCCATGGCCTTCTTGCTATTTGCAGTTG
GGTGAAATCGCGTGGGTCGCGACCGCATCTTAACGGGTGCCCATGGTACG
AGACTGAGTCGAAATTGGTCTCTTTGCACGGCGGTAGGATGTGGTCGACG
GATTTCGTTTCCGCAGTATTTTACCGAGGCTATGGTAACAAATGTAAATT
ATAGGCCCTAAATCATATCCTTGTTCGGGAGCAATTAGTTCTTGCGCTCG
TTGCTCTCTGATCGTGTTCGATTTGTTCGTTGGTGTTTTCACTTTTGAAC
GATTTTGTGGTGCGTGTTTTTTCTTGTATGGTGGTCGGGAACTGCTGTCG
TCAGTTTTGGGGTAACATAAGAAGCTATTTGTAGCATCCGCTTTGCACAA
TTCCAATGCGTACAGGATCGCAACATTTCGTTCTGTATGCAGACCAGAGG
TGTGGGACTTACGAAGACCAAATGTCTATAGGACGTTTTCTGGATTTACA
AGGCCGTGCAATCATTTGGATGAGCTTGCACGTTCGATATTCCTGTGATG
TCAGGTGCTTTCTGTCGATATACATTTGTTGAGCGTTGCCGGTTATGACG
GGTTGGCACGATAGTCTTCCTTGAAAAATAAG
back to top

Coding sequence (CDS) from alignment at Scaffold_230:340175..342856-

>EsuBft811_8a-0001 ID=EsuBft811_8a-0001|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_230:340175..342856- (Ectocarpus subulatus male Bft15b)
ATGAACAAGTCACTCTTCACGATGTTCGCTCTATCGCTGCTGCTCGCCCT
AGCTGTCTCCTCTGCTTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATCTAGAAGTAGCGAAACTCCTCGACGACACGTGCGAATGGGACACCTAC
ATGTGCTGCTTTACCAACCACGACTCAGGAGAGGGGGTGACCGCGAACAC
CGATGTTTGCAGCGTACCGAACGAGGGTTCCGTGTACTGCCACGGCTTCG
CCTGGCCGGATGGCGCAGATGTGAACAACCACATCCTTCCCCTGTACCAC
TATGTGAAGAACATTGGCCGCACCGAAGAAGAGGGGGGTTACTACGGAAG
CGTGGAGGGAGCGCCGGAATGCGGGTGTATCGAGGAAATGCCTCAAGTTT
CTTTCGCGGAGTGCTCCAGGTTCGATATCGACGGGATCGTTGGGTGCGGA
GAAGGCGGGCTTTACAGCCAATACAACGGCCGCCTGGGCGCGCCCTACGG
TGAGATGGAACACAACCTGGTGAGGTCTTGCGACAATGCCTAA
back to top