EsuBft811_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_4a-0001
Unique NameEsuBft811_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:293234..296693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYJ3
ProteomeIdEsuBft811_4
Protein domainsSSF56672
Protein domainsIPR012816
Protein domainsPTHR11079
Protein domainsSSF143990
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tf2-6 polyprotein os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:tf2-6 pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length2025
Hectar predicted targeting categoryother localisation
Evalue2.13e-51
EggNOG OGsCOG3236@1|root,2S4FY@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K09935
DescriptionDomain of unknown function (DUF1768)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_4aEsuBft811_4aEctocarpus subulatus male Bft15bgeneScaffold_230 293234..296693 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_4a-0001-exonagat-exon-27524Ectocarpus subulatus male Bft15bexonScaffold_230 293234..294041 +
EsuBft811_4a-0001-exonagat-exon-27523Ectocarpus subulatus male Bft15bexonScaffold_230 294874..295157 +
EsuBft811_4a-0001-exonEsuBft811_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 295324..296034 +
EsuBft811_4a-0001-exonagat-exon-27522Ectocarpus subulatus male Bft15bexonScaffold_230 296472..296693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_4a-0001-cdsEsuBft811_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 293234..294041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_4a-0001EsuBft811_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 293234..296693 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_4a-0001 ID=EsuBft811_4a-0001|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2025bp|location=Sequence derived from alignment at Scaffold_230:293234..296693+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCTTGAACCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCCACTTATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAACGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCATCGTCGTGAAGAGATCGTGCTCACGGGGTCGTATGCCAAGTT
TGCTCGAAACCATGATATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTAA
AAACCTGTTGGGAAAAGCTTTGAAGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCGAAGATTTCCCCGCTTCCAATTCTCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTAC
TGCTACAGGTTGTGCCGAGCTCGAGCCGGGAGACGTAATTGGAGTGTCTG
CCGCGCCGCTACTACGAGTACCGGTGGAAACCCTGAAGGCGGCACCATCT
TCGATTCCTACCGGCCCCACAACATCTACATCACCACCTCGGGTCAACGC
CGTTGGCCCCAAGTCCGGGACTCACCGCTCTCCGGACCCAGCCTCTGCCC
CGCCTCCTCCGAAGCCGCCTCCACAAGAACTACTCGACCGCTTCTCTGAG
GCACAGCGCTCCAGCTTCATGCGCGTGTGGGCTAGGCTGCCCGGACGAAG
CCCGTTGCATCACGCCCGTATCGTATCAATATACTACCGGAAATTCCTCA
AGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCACTTCTCAAACAAGGC
GTCCCCTTCAAGTACACCCCGGGCATGGTAAAGGTTGTCAATACGTTGTT
AAGCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGGATTGGGCAGCAA
TCGAGGACAACAGCCGTCCTCTTCGTTTGTGTTCCGACGCGTGCATCGAC
GGTTTTGGCTCCTCCTTGGAACAAGGACAGCTCGATGGCTTGGTGAGACC
CAACGTGTACATCAGCCGCGCTACTCTTCCTGCGGAGCGTAACTGGACCG
TTTTGGATCTGGAGGCTGGTGGCATTGTTTGGGCCATCAAATGCCTTCGC
GGTTATCTGTGGTCGACCAAGTTCATCATCTACTCGGACCACAAAGCCTT
GGAGAGCATTGGCAAGGTTGGGGAACACAACGCTAGGGTGCAACGATGGC
TGGAATTCCTGTCCAACTTCACCTACACCCTGAAATATCGGAAAGGTTCG
GCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTTTACCAGCACAAGA
CACGGACAAAACCGGCCCCGACTGCATTGATGGTGTCGATCAAGCGGGTG
TTTTCCTCATTTGGGCTTGCGGGCGCAACTATCACTCGTCGTCTACGCCG
GAGGTCCCGCTCGACAAACAACCGGACCGCCGGTCTGCTGCCGCCATCCG
CAACGCCGGCACCGGCGTTTTCGTCGACTGCTCTTGCGCCACCGGTGTCT
TCGCCATCAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTCTCTACAGGT
TTCGCGCGGGACTTCGCCACTCACGATGTCCCCTTCGCGGACATCACCAC
AGACTGCGGCTGCCCCAGTCGCTGA
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protein sequence of EsuBft811_4a-0001

>EsuBft811_4 ID=EsuBft811_4|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=674bp
MASANIDPAGAAALRPPSGSRRVATSPAPASLSGSSPSEKRTRPLEPPPP
VPGARSLPLRPAPAPPFDDKCEYASDDVLLFWKPPSVFSQWTPSAFDVLG
VRYSCGEPLMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAE
WEHRREEIVLTGSYAKFARNHDMKHHLLETGTRLLAEASPFDRVWGIGMS
ACFPDASDSSKWAASGKNLLGKALKEVRRLLRDHPLSGEDFPASNSPTPP
ISQPPLHGHRRIHEVATATGCAELEPGDVIGVSAAPLLRVPVETLKAAPS
SIPTGPTTSTSPPRVNAVGPKSGTHRSPDPASAPPPPKPPPQELLDRFSE
AQRSSFMRVWARLPGRSPLHHARIVSIYYRKFLKNLATKVRPLNSLLKQG
VPFKYTPGMVKVVNTLLSELARPPILVFPDWAAIEDNSRPLRLCSDACID
GFGSSLEQGQLDGLVRPNVYISRATLPAERNWTVLDLEAGGIVWAIKCLR
GYLWSTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGS
ANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIWACGRNYHSSSTP
EVPLDKQPDRRSAAAIRNAGTGVFVDCSCATGVFAISGAPCIPDFAFSTG
FARDFATHDVPFADITTDCGCPSR
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mRNA from alignment at Scaffold_230:293234..296693+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_4a-0001 ID=EsuBft811_4a-0001|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3460bp|location=Sequence derived from alignment at Scaffold_230:293234..296693+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCTTGAACCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCCACTTATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAACGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCATCGTCGTGAAGAGATCGTGCTCACGGGGTCGTATGCCAAGTT
TGCTCGAAACCATGATATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTAA
AAACCTGTTGGGAAAAGCTTTGAAGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCGAAGATTTCCCCGCTTCCAATTCTCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTAC
TGCTACAGGTTCTTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTC
TACGTTTGGACGCTCCGGGGGACCATGCTCCTGGCGTTCATCTGGTGGTA
TCGACATCCGCTTGTGCAGACCAGCCTGCTCTTCTCGAACACGGGCCCGA
TCTGGTCGGCGGCACGCTCCTGTTGGACTCGCACTCATACACCACCCGGG
TCCTGCTGCATGGACGACCTACAGCCACTTCTCAACTCGCGCGAGTGGTG
CTTCTGGACTCTGGGTCTCCTGCATCCTTCGTTTCCGACTCCGTGGTCAC
CGCCATGATAGCTGCCGGAGCCCTGACAGCTGGCAGCGTTCGTGTTTCGC
CCTCTCGTCGTTGGGGTGGGTTTGCTGATGGANAATTCGTCTCACCGTAA
TTTTCTCCATGGAGATAGACCTACCGCTTCCCTGGCGGTCTGGGTCTGTG
TGGTTCCAGACGCCGCCATGGGGCACGCCGTGCTTCTGGGTCGTGATAGC
TGGATGCTCTTCAACTCTCGCGTGTTCACCACCCTCCCCCACCCTGGACC
GGACGGCCGGGTTATGGGCGAGCTCACGCTCTCTCCGCATTTTACACCTG
GCGCTTGCGTTTACGCTACACACGACGACGCTCCTGCCTCCTCGTTTCAC
CTTAAATATGCAGGGAGCTTGGGAATTTCTTTGGGGCCGGAGCCCGCACT
CGTTGAGGTGTACATCGTTCGTTCTTCTGGCATGCCTGCGCTGATTGGAG
AGTATCTGGTATCGTTAAAACACGAAGTGGGTGCGCTTTCGTCCCCAGAT
GCGTTCGGTTCCAATGGTCTCCAGCGTATTCCCCTTGCAGGTTGTGCCGA
GCTCGAGCCGGGAGACGTAATTGGAGTGTCTGCCGCGCCGCTACTACGAG
TACCGGTGGAAACCCTGAAGGCGGCACCATCTTCGATTCCTACCGGCCCC
ACAACATCTACATCACCACCTCGGGTCAACGCCGTTGGCCCCAAGTCCGG
GACTCACCGCTCTCCGGACCCAGCCTCTGCCCCGCCTCCTCCGAAGCCGC
CTCCACAAGAACTACTCGACCGCTTCTCTGAGGCACAGCGCTCCAGCTTC
ATGCGCGTGTGGGCTAGGCTGCCCGTACATATGCACGACATCGCTTTCGT
TCTACACAATCCGGGATGGACACCGGAGGCTATTGATCGTTTGGCCGACG
CCCTTGTGGAGTATTCTGACGTGTTCTCTACTTCGAAAACCGATTTTGGT
TCCTGCATCATCATGCCGTTCACTCTTGGTGTCCCAGCAGGGACGAAGCC
CGTTGCATCACGCCCGTATCGTATCAATATACTACCGGAAATTCCTCAAG
AATCTCGCCACCAAGGTGCGGCCTCTCAACTCACTTCTCAAACAAGGCGT
CCCCTTCAAGTACACCCCGGGCATGGTAAAGGTTGTCAATACGTTGTTAA
GCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGGATTGGGCAGCAATC
GAGGACAACAGCCGTCCTCTTCGTTTGTGTTCCGACGCGTGCATCGACGG
TTTTGGCTCCTCCTTGGAACAAGGACAGCTCGATGGCTTGGTGAGACCCA
ACGTGTACATCAGCCGCGCTACTCTTCCTGCGGAGCGTAACTGGACCGTT
TTGGATCTGGAGGCTGGTGGCATTGTTTGGGCCATCAAATGCCTTCGCGG
TTATCTGTGGTCGACCAAGTTCATCATCTACTCGGACCACAAAGCCTTGG
AGAGCATTGGCAAGGTTGGGGAACACAACGCTAGGGTGCAACGATGGCTG
GAATTCCTGTCCAACTTCACCTACACCCTGAAATATCGGAAAGGTTCGGC
AAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTTTACCAGCACAAGACA
CGGACAAAACCGGCCCCGACTGCATTGATGGTGTCGATCAAGCGGGTGTT
TTCCTCATTTGGGCTTGCGGGCGCAACTATCACTCGTCGTCTACGCCGGA
GGTCGGTTTGGGTGGGCTCCGTCCTCCTTGCACGGCGGGAGTCGTTTCGC
CCCCAGCGTTGCAGCCCTCCGATTTTGGGGATTTTTGCCGACATCACCCG
CGTCGGTTGGATGCTCTGACGGACTCAACGATTGCCCGCGAGAATTCTCG
GCGGTCCCCGGGGGTCTTCATCGTCTCGCCTGTTCTCGCATCTTCAGGGC
CTGCTTCCTCATTGACTTCGGATGCCTCCCGCGTGATGTCTCTTGCCGCG
TCTTTGGCGACTAGATATGTGCACGTTTTGTGTCCGCTTCCGGAGCAGGG
ACCGCTCATTTGTTCACGGACTCGGGCCAAAACTACCGCAGTTTCCGGAG
GCACCGTCACCGGTCCCGCTTATTTCGGACGCCAGCCGCGGGCTACCATT
GTCCCTCGGACATCGTCGCCTGCCCGTCGCTCTAGCAGGTCCCGCTCGAC
AAACAACCGGACCGCCGGTCTGCTGCCGCCATCCGCAACGCCGGCACCGG
CGTTTTCGTCGACTGCTCTTGCGCCACCGGTGTCTTCGCCATCAGCGGCG
CGCCCTGCATCCCCGACTTCGCCTTCTCTACAGGTTTCGCGCGGGACTTC
GCCACTCACGATGTCCCCTTCGCGGACATCACCACAGACTGCGGCTGCCC
CAGTCGCTGA
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Coding sequence (CDS) from alignment at Scaffold_230:293234..296693+

>EsuBft811_4a-0001 ID=EsuBft811_4a-0001|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2025bp|location=Sequence derived from alignment at Scaffold_230:293234..296693+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCTTGAACCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCCACTTATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAACGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCATCGTCGTGAAGAGATCGTGCTCACGGGGTCGTATGCCAAGTT
TGCTCGAAACCATGATATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTAA
AAACCTGTTGGGAAAAGCTTTGAAGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCGAAGATTTCCCCGCTTCCAATTCTCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTAC
TGCTACAGGTTGTGCCGAGCTCGAGCCGGGAGACGTAATTGGAGTGTCTG
CCGCGCCGCTACTACGAGTACCGGTGGAAACCCTGAAGGCGGCACCATCT
TCGATTCCTACCGGCCCCACAACATCTACATCACCACCTCGGGTCAACGC
CGTTGGCCCCAAGTCCGGGACTCACCGCTCTCCGGACCCAGCCTCTGCCC
CGCCTCCTCCGAAGCCGCCTCCACAAGAACTACTCGACCGCTTCTCTGAG
GCACAGCGCTCCAGCTTCATGCGCGTGTGGGCTAGGCTGCCCGGACGAAG
CCCGTTGCATCACGCCCGTATCGTATCAATATACTACCGGAAATTCCTCA
AGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCACTTCTCAAACAAGGC
GTCCCCTTCAAGTACACCCCGGGCATGGTAAAGGTTGTCAATACGTTGTT
AAGCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGGATTGGGCAGCAA
TCGAGGACAACAGCCGTCCTCTTCGTTTGTGTTCCGACGCGTGCATCGAC
GGTTTTGGCTCCTCCTTGGAACAAGGACAGCTCGATGGCTTGGTGAGACC
CAACGTGTACATCAGCCGCGCTACTCTTCCTGCGGAGCGTAACTGGACCG
TTTTGGATCTGGAGGCTGGTGGCATTGTTTGGGCCATCAAATGCCTTCGC
GGTTATCTGTGGTCGACCAAGTTCATCATCTACTCGGACCACAAAGCCTT
GGAGAGCATTGGCAAGGTTGGGGAACACAACGCTAGGGTGCAACGATGGC
TGGAATTCCTGTCCAACTTCACCTACACCCTGAAATATCGGAAAGGTTCG
GCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTTTACCAGCACAAGA
CACGGACAAAACCGGCCCCGACTGCATTGATGGTGTCGATCAAGCGGGTG
TTTTCCTCATTTGGGCTTGCGGGCGCAACTATCACTCGTCGTCTACGCCG
GAGGTCCCGCTCGACAAACAACCGGACCGCCGGTCTGCTGCCGCCATCCG
CAACGCCGGCACCGGCGTTTTCGTCGACTGCTCTTGCGCCACCGGTGTCT
TCGCCATCAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTCTCTACAGGT
TTCGCGCGGGACTTCGCCACTCACGATGTCCCCTTCGCGGACATCACCAC
AGACTGCGGCTGCCCCAGTCGCTGA
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