EsuBft811_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_3a-0001
Unique NameEsuBft811_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:289708..292825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft811_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length229
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_3aEsuBft811_3aEctocarpus subulatus male Bft15bgeneScaffold_230 289708..292825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_3a-0001-exonagat-exon-27520Ectocarpus subulatus male Bft15bexonScaffold_230 289708..291278 -
EsuBft811_3a-0001-exonEsuBft811_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 291647..292306 -
EsuBft811_3a-0001-exonagat-exon-27521Ectocarpus subulatus male Bft15bexonScaffold_230 292766..292825 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_3a-0001-exonagat-three_prime_utr-21826Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 289708..290939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_3a-0001-cdsEsuBft811_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 290940..291278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_3a-0001EsuBft811_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 290940..292825 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_3a-0001 ID=EsuBft811_3a-0001|Name=EsuBft811_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2291bp|location=Sequence derived from alignment at Scaffold_230:289708..292825- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGCTCGACGTCTTACCTCCCTGTCGCCCACACCACAAAGGAACT
GTCGAAATGGGTAGAGGGTCAACACTCATCACGGCGGCCGAAGAACCTTG
GCTCTACGAAGGGGTCACTGTCGAAAGCGGAGGCGGAGGCACGAGAGCAG
GCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGC
CGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTG
CTGCGAGGAAGCAGGCGGAGGAACGTGAGGCTGCTCGGGCTGCTTCTGCG
AGGAAGCAGGAGGAGGAGCGTGCGGCTGCTCGGGCGGAGCGTGAGGCGTA
TCTCCAAGCGGCTAGGGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGG
AGCTGGAGCCCCGCCACCAGGACCCGCGAGCAGCCCCCGACCCCCGTCGT
CGTGTTATCATACCCCCCCCCACGCAATCCCAGGTGCCCCTTGGTTCCCA
TAGTACCGCCTCGCCGCATGAGAAGGAGCGGGAGATGGCGGCTTCTCCGA
CGAACGAGAAGGAGCGGGAGAGGGCAGCGACTCCGGAGTTTTCGGTGACG
TTGGGTCTTCCGGCCGGTGCTGAAGACGGATCATCGTTTGCGGCCACATC
CACGGGGTGCGAGTTCCACGTCGGAGATACAGCGTTCCTGTCCCGCCCGC
TGGAGATGCCTGCAGAAGAATCCGTGTTCCAGCTTTTGTTCGCTCCCCGT
CGTGCCACCTTTGATAGGGGTCCTCAAGGAACGTCGGTGGTGACACAAGA
TGGAGGACTCCAGCTACCACTTGCTCGTGCTGCCTCCAACAACAACTTCA
AGCACGATCTGCAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACATGGT
TCTGGAGGGGACAAGGACTACAGTCGATCGGCGGCTCCTGTGTCCAAGAG
TTGGGAGAACCGTTGGGGTGACCGGGATTCGACGGCCAAGAGCGGGACGG
ACGACCACCACCGCTCCACCCAGTCTTCGCGAGGGCGGCGCGTCGGAGAT
AACAGGTGAGGGCGCGGCGTGGGGAACCAGCCCACCAGGTCTTCGCCGGC
GAGGCGCCATCGCCGGAGCAGGAGTCGGAGCGCAGAACGTCAACAGCGCA
CCAATCCTTCGTCTAGGCGTGGGCGCAGCCGGAGCGGAGACCGTCGTGGG
AGAAACACGCCTTCGTCTAGGCGTAGCCGCAGCCGGAGCCAGAACCGGAG
CGGGGGCAACAGGAGGGCAACCAGCACTGACAGCAGTCGCGGCGGAAAAG
GGGGACGGAGATCAGGCCACGGAAACAGGCAAGTGATGTATGATCGGGGT
GTTTTTCGTAGCTCTGGGTTGTTGGGGGAAAGCAAGGATGCTTCAGAAGA
CGGTTCACTCTGTTCTTCACCGCTTGCTCTACGCCCTCCCGCTGATGTAG
GCCAACCGACCAGGTCTTCTTTGGCTTTCAAACTTGCCAACATGCAGCTT
TGTGAACATTCAGCCGCTGTGAAAAGCCATGCCCCTGCCCATGCCGTTAT
GGATAATCCCACATCTTCCTTGCCGTTGGACGAACGTGTTGAGTCACCAC
GCCATGCTGCATCACACGCCTCGACTTCGGCTTCCCGTACTGAAATGCTG
TTGGAACAAGTACTCACTCTCCTGCGAGCAAATCAAGTAGTGGATGCTGC
TGCCGACGCGAATGTACAACCTCCTGTGCCCTCCCACGCTCCTAGCGTGC
CACCACCTGCCCCATCTTCTTCCCCACCAACGCATCTGACACCGCTGCAA
CACCACGCTTCGAGCTGTTCGGGAGCTCCTGTAGGGCGCGATGTTCATGC
CGAAACCGCTGCCAGGGCCACGTCAGGATCATCGTCAAAAGCCACGAGGT
CGGCGACAGTACCGGTCGGGCCTGCGGTGGCACCGTCAGCGTCGACAGCC
CCAGCCCTGTTGCAACAGCCTTTGGTGGTATCGCCCCCCCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft811_3a-0001

>EsuBft811_3 ID=EsuBft811_3|Name=EsuBft811_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=352bp
MDRSTSYLPVAHTTKELSKWVEGQHSSRRPKNLGSTKGSLSKAEAEAREQ
AKREDAERLAEREAALAAAARKQEEEREAVRAAAARKQAEEREAARAASA
RKQEEERAAARAEREAYLQAARAKQGALRSRLKELEPRHQDPRAAPDPRR
RVIIPPPTQSQVPLGSHSTASPHEKEREMAASPTNEKERERAATPEFSVT
LGLPAGAEDGSSFAATSTGCEFHVGDTAFLSRPLEMPAEESVFQLLFAPR
RATFDRGPQGTSVVTQDGGLQLPLARAASNNNFKHDLQAPRQASSRPAHG
SGGDKDYSRSAAPVSKSWENRWGDRDSTAKSGTDDHHRSTQSSRGRRVGD
NR
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mRNA from alignment at Scaffold_230:289708..292825-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_3a-0001 ID=EsuBft811_3a-0001|Name=EsuBft811_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3118bp|location=Sequence derived from alignment at Scaffold_230:289708..292825- (Ectocarpus subulatus male Bft15b)
ATGGACCGCTCGACGTCTTACCTCCCTGTCGCCCACACCACAAAGGAACT
GTCGAAATGGGTCTGTCATGTCCATTACCAGCAGGCGATGAGGCGGACGA
CGAGGAGGCGGGCCGAGAAACTAGATGTGATTGAGGCGCGTGGGGAGTAT
CCAAAGCAATAGGTTGTACACGAACATCTTGGGAGACTCCAAAGGGTGCA
CGGTGGTTGCTGTTGACGGTAGTACCGGCTGAATTCCGCCATCGGCTTGT
CATTTCTTACCCCTCCAGCCCCTTTTTGGCGTTCACGAAACCACGATTAC
AGGATTTGAAGGAGTGGTCTTCTCCTAAGCAGTTGAACCACTTGCCCTTG
TACAGTCGAAGCGCGTTGCGGCGCTCTTCAGCCGAGACCAAGGGGGTGAA
CAATGGCGGATTATTCTTGGTTAGAGCCATCTCACTAGCGACGTTGTACA
CCTCTTGGAAGTGTCCTTGCAACGGCCAGTCGCTGTAGTGCAACAGAAAA
GGGTCCCGATCATCATTAGGTAGAGGGTCAACACTCATCACGGCGGCCGA
AGAACCTTGGCTCTACGAAGGGGTCACTGTCGAAAGCGGAGGCGGAGGCA
CGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAACGGGAGGC
TGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTC
GGGCTGCTGCTGCGAGGAAGCAGGCGGAGGAACGTGAGGCTGCTCGGGCT
GCTTCTGCGAGGAAGCAGGAGGAGGAGCGTGCGGCTGCTCGGGCGGAGCG
TGAGGCGTATCTCCAAGCGGCTAGGGCGAAGCAGGGGGCGCTCCGATCGC
GGCTGAAGGAGCTGGAGCCCCGCCACCAGGACCCGCGAGCAGCCCCCGAC
CCCCGTCGTCGTGTTATCATACCCCCCCCCACGCAATCCCAGGTGCCCCT
TGGTTCCCATAGTACCGCCTCGCCGCATGAGAAGGAGCGGGAGATGGCGG
CTTCTCCGACGAACGAGAAGGAGCGGGAGAGGGCAGCGACTCCGGAGTTT
TCGGTGACGTTGGGTCTTCCGGCCGGTGCTGAAGACGGATCATCGTTTGC
GGCCACATCCACGGGGTGCGAGTTCCACGTCGGAGATACAGCGTTCCTGT
CCCGCCCGCTGGAGATGCCTGCAGAAGAAGTAACNATGAGAAGGAGCGGG
AGATGGCGGCTTCTCCGACGAACGAGAAGGAGCGGGAGAGGGCAGCGACT
CCGGAGTTTTCGGTGACGTTGGGTCTTCCGGCCGGTGCTGAAGACGGATC
ATCGTTTGCGGCCACATCCACGGGGTGCGAGTTCCACGTCGGAGATACAG
CGTTCCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGAAGTAACGTTCGAC
CATGAGGACAAATTGGCAGCTCTTTTTGCATGGGCTGGCATAAAACAACT
CGTCCATGCGCAATTTCCCCCACCGCACACCGTTGCTTTCGGGCACATTC
ACCATACCCCCTACGTCGCGAAACTTCCGCCTTCTTCGCGGCAGCAGTCC
GTGTTCCAGCTTTTGTTCGCTCCCCGTCGTGCCACCTTTGATAGGGGTCC
TCAAGGAACGTCGGTGGTGACACAAGATGGAGGACTCCAGCTACCACTTG
CTCGTGCTGCCTCCAACAACAACTTCAAGCACGATCTGCAAGCCCCCCGG
CAGGCCTCTTCACGCCCTGCACATGGTTCTGGAGGGGACAAGGACTACAG
TCGATCGGCGGCTCCTGTGTCCAAGAGTTGGGAGAACCGTTGGGGTGACC
GGGATTCGACGGCCAAGAGCGGGACGGACGACCACCACCGCTCCACCCAG
TCTTCGCGAGGGCGGCGCGTCGGAGATAACAGGTGAGGGCGCGGCGTGGG
GAACCAGCCCACCAGGTCTTCGCCGGCGAGGCGCCATCGCCGGAGCAGGA
GTCGGAGCGCAGAACGTCAACAGCGCACCAATCCTTCGTCTAGGCGTGGG
CGCAGCCGGAGCGGAGACCGTCGTGGGAGAAACACGCCTTCGTCTAGGCG
TAGCCGCAGCCGGAGCCAGAACCGGAGCGGGGGCAACAGGAGGGCAACCA
GCACTGACAGCAGTCGCGGCGGAAAAGGGGGACGGAGATCAGGCCACGGA
AACAGGCAAGTGATGTATGATCGGGGTGTTTTTCGTAGCTCTGGGTTGTT
GGGGGAAAGCAAGGATGCTTCAGAAGACGGTTCACTCTGTTCTTCACCGC
TTGCTCTACGCCCTCCCGCTGATGTAGGCCAACCGACCAGGTCTTCTTTG
GCTTTCAAACTTGCCAACATGCAGCTTTGTGAACATTCAGCCGCTGTGAA
AAGCCATGCCCCTGCCCATGCCGTTATGGATAATCCCACATCTTCCTTGC
CGTTGGACGAACGTGTTGAGTCACCACGCCATGCTGCATCACACGCCTCG
ACTTCGGCTTCCCGTACTGAAATGCTGTTGGAACAAGTACTCACTCTCCT
GCGAGCAAATCAAGTAGTGGATGCTGCTGCCGACGCGAATGTACAACCTC
CTGTGCCCTCCCACGCTCCTAGCGTGCCACCACCTGCCCCATCTTCTTCC
CCACCAACGCATCTGACACCGCTGCAACACCACGCTTCGAGCTGTTCGGG
AGCTCCTGTAGGGCGCGATGTTCATGCCGAAACCGCTGCCAGGGCCACGT
CAGGATCATCGTCAAAAGCCACGAGGTCGGCGACAGTACCGGTCGGGCCT
GCGGTGGCACCGTCAGCGTCGACAGCCCCAGCCCTGTTGCAACAGCCTTT
GGTGGTATCGCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_230:289708..292825-

>EsuBft811_3a-0001 ID=EsuBft811_3a-0001|Name=EsuBft811_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1059bp|location=Sequence derived from alignment at Scaffold_230:289708..292825- (Ectocarpus subulatus male Bft15b)
ATGGACCGCTCGACGTCTTACCTCCCTGTCGCCCACACCACAAAGGAACT
GTCGAAATGGGTAGAGGGTCAACACTCATCACGGCGGCCGAAGAACCTTG
GCTCTACGAAGGGGTCACTGTCGAAAGCGGAGGCGGAGGCACGAGAGCAG
GCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGC
CGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTG
CTGCGAGGAAGCAGGCGGAGGAACGTGAGGCTGCTCGGGCTGCTTCTGCG
AGGAAGCAGGAGGAGGAGCGTGCGGCTGCTCGGGCGGAGCGTGAGGCGTA
TCTCCAAGCGGCTAGGGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGG
AGCTGGAGCCCCGCCACCAGGACCCGCGAGCAGCCCCCGACCCCCGTCGT
CGTGTTATCATACCCCCCCCCACGCAATCCCAGGTGCCCCTTGGTTCCCA
TAGTACCGCCTCGCCGCATGAGAAGGAGCGGGAGATGGCGGCTTCTCCGA
CGAACGAGAAGGAGCGGGAGAGGGCAGCGACTCCGGAGTTTTCGGTGACG
TTGGGTCTTCCGGCCGGTGCTGAAGACGGATCATCGTTTGCGGCCACATC
CACGGGGTGCGAGTTCCACGTCGGAGATACAGCGTTCCTGTCCCGCCCGC
TGGAGATGCCTGCAGAAGAATCCGTGTTCCAGCTTTTGTTCGCTCCCCGT
CGTGCCACCTTTGATAGGGGTCCTCAAGGAACGTCGGTGGTGACACAAGA
TGGAGGACTCCAGCTACCACTTGCTCGTGCTGCCTCCAACAACAACTTCA
AGCACGATCTGCAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACATGGT
TCTGGAGGGGACAAGGACTACAGTCGATCGGCGGCTCCTGTGTCCAAGAG
TTGGGAGAACCGTTGGGGTGACCGGGATTCGACGGCCAAGAGCGGGACGG
ACGACCACCACCGCTCCACCCAGTCTTCGCGAGGGCGGCGCGTCGGAGAT
AACAGGTGA
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