EsuBft5673_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5673_2a-0001
Unique NameEsuBft5673_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:281818..283518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft5673_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length96
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5673_2aEsuBft5673_2aEctocarpus subulatus male Bft15bgeneScaffold_230 281818..283518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5673_2a-0001EsuBft5673_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 283369..283518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5673_2a-0001-exonagat-exon-48794Ectocarpus subulatus male Bft15bexonScaffold_230 281818..282147 -
EsuBft5673_2a-0001-exonagat-exon-48793Ectocarpus subulatus male Bft15bexonScaffold_230 282665..282877 -
EsuBft5673_2a-0001-exonEsuBft5673_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 283099..283518 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5673_2a-0001-exonagat-three_prime_utr-18496Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 281818..282147 -
EsuBft5673_2a-0001-exonagat-three_prime_utr-18497Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 282665..282877 -
EsuBft5673_2a-0001-exonagat-three_prime_utr-18498Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 283099..283368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5673_2a-0001-cdsEsuBft5673_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 283369..283518 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5673_2a-0001 ID=EsuBft5673_2a-0001|Name=EsuBft5673_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=963bp|location=Sequence derived from alignment at Scaffold_230:281818..283518- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTGCGGGGTCGAGAACCCTCACTCCGCGCAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGAGGTCAATGGTCTAACGACTACGGCATGCACGACTAT
GAGTACACCCCCCCCCTAAGGGTGCGCTACCAAAGACGCGTGACGCATGG
ATGCGTGGAGTGAGGATTGCTTACGGAAACCTCACAGGTTGAGTGATGTA
GGAGATTGCCGGACACATAGACGTGTTGAGTGATTGCAGCTGTATACTGA
TACCCCAAGGGTTATGTGAGGTTTGAGATTGCCGAACACATGGACGAGTT
GAATGAGGATAGACACATATTGAACCTCCACGGGTTGAGTGATGTTTGAG
TGCCGGACACATAGACGCATTGAATGAGGATAGACACATATTGAACCTCA
CAGTTGATTTTTATTGGAGATTGCGAGACACCTAGACGTGTTGAGTGAGG
ATAGCTGCATGCTGGAACCTCACAGATGGATTGTTTTCCAGACACATAGA
CGCGCTACGTGGGGATAGCTACATACTGAAACCTCACGAGCTGAGTAATG
TCGGATAGTGCCAGACACATCGACGATTTGAGTGAGGGTGGCTGCATATT
GAGACCTAACGGGTTGAGTGACGTTTGCGACTGCCGGACACATAGACGCA
TTGAGTTACGAAAGCTGCATACTGAAACCTCACAGGTTGATTTGTATTGG
AGATTGCCGGACACATAGACGCGTTGAGTAAGGATAGCTGTATACTGAAA
ATCCACAGTAGGATATAGTGAGGGGACAATTCGAGGATGCAGTACACATA
GAACTGACCCCCA
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protein sequence of EsuBft5673_2a-0001

>EsuBft5673_2 ID=EsuBft5673_2|Name=EsuBft5673_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MLCGVENPHSAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_230:281818..283518-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5673_2a-0001 ID=EsuBft5673_2a-0001|Name=EsuBft5673_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1701bp|location=Sequence derived from alignment at Scaffold_230:281818..283518- (Ectocarpus subulatus male Bft15b)
ATGTTGTGCGGGGTCGAGAACCCTCACTCCGCGCAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGAGGTCAATGGTCTAACGACTACGGCATGCACGACTAT
GAGTACACCCCCCCCCTAAGGGTGCGCTACCAAAGACGCGTGACGCATGG
ATGCGTGGAGTGAGGATTGCTTACGGAAACCTCACAGGTTGAGTGATGTA
GGAGATTGCCGGACACATAGACGTGTTGAGTGATTGCAGCTGTATACTGA
TACCCCAAGGGTTATGTGAGGTTTGAGATTGCCGAACACATGGACGAGTT
GAATGAGGATAGACACATATTGAACCTCCACGGGTTGAGTGATGTTTGAG
TGCCGGACACATAGACGCATTGAATGAGGATAGACACATATTGAACCTCA
CAGTTGATTTTTATTGGAGATTGCGAGACACCTAGACGTGTTGAGTGAGG
ATAGCTNCAGCTGTATACTGATACCCCAAGGGTTATGTGAGGTTTGAGAT
TGCCGAACACATGGACGAGTTGAATGAGGATAGACACATATTGAACCTCC
ACGGGTTGAGTGATGTTTGAGTGCCGGACACATAGACGCATTGAATGAGG
ATAGACACATATTGAACCTCACAGTTGATTTTTATTGGAGATTGCGAGAC
ACCTAGACGTGTTGAGTGAGGATAGCTGCATGCTGGAACCTCACAGATGG
ATTGGTTTTTGAGTTTGCCAGACACATTTACGCGTTGAGTGGGGATAGAT
GCATACTGAAACCGCACAGATGGATTGGTTTTTAAGTTTGCCAGACACAT
AGGTGCTATGAGTGGGATAGCTACATACTGAAACCTCACGAGTTGCGTGA
TGTTGGATAGTGCCGGACACAAACGCTTTGAGTGAGGAAAGACACATACT
GAAACCTCACAGGTTGATTTGTATTGGTGATTGCCGGACACATTAGACAT
GTTGAGTGAGGATAGCTACATACTGAATTCTTACAGAGGGACTGGTTTTT
GAGTTTGCCAGACACATAGACGCGTTGAGTGGGGATAGCTGCATACTGAA
ATCTCACAGATGGATTGGTTTTTGAGTTTGCCAGACACATTGGCGCTATG
AGTGAGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATA
GTGCCGGACACCTAGACGTGTTGAGTGAGGAAAGACACATACTGAAGCCT
CGCAGGTGATTGGATTTTGAGTTTTCCAGACACATAGACGCGCTACGTGG
GGATAGCTACATACTGAAACCTCACGAGCTGAGTAATGTCGGATAGTGCC
AGACACATCGACGATTTGAGTGAGGGTGGCTGCATATTGAGACCTAACGG
GTTGAGTGACGTTTGCGACTGCCGGACACATAGACGCATTGAGTTACGAA
AGCTGCATACTGAAACCTCACAGGTTGATTTGTATTGGAGATTGCCGGAC
ACATAGACGCGTTGAGTAAGGATAGCTGTATACTGAAAATCCACAGTAGG
ATATAGTGAGGGGACAATTCGAGGATGCAGTACACATAGAACTGACCCCC
A
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Coding sequence (CDS) from alignment at Scaffold_230:281818..283518-

>EsuBft5673_2a-0001 ID=EsuBft5673_2a-0001|Name=EsuBft5673_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_230:281818..283518- (Ectocarpus subulatus male Bft15b)
ATGTTGTGCGGGGTCGAGAACCCTCACTCCGCGCAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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