Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FT60 |
| ProteomeId | EsuBft559_7 |
| Protein domains | PTHR23026 |
| Protein domains | IPR000415 |
| Protein domains | IPR029479 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | protein os:synechocystis (strain pcc 6803 kazusa) gn:drga pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2057 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.1e-80 |
| EggNOG OGs | COG0778@1|root,2RZ0D@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Nitroreductase family |
| COG category | C |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016491 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft559_7a-0001 ID=EsuBft559_7a-0001|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2057bp|location=Sequence derived from alignment at Scaffold_230:218561..221477+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTAGCGGAAGAGGGCTGGCCCAAGGGATTCATCAATAAGGTTCCCCT
CTACTTGTCGGTGTTCTCGACGGGACACAACCGGCTTCTCCGGCTTCCAC
TGGTCGCAGCGAAGAAGCTGTCGTTCGCGGTGGTGCGGAGGCTCGGGAAG
GGGATGCCCACTGTGTCGGGGGCGGAGGCGTGGGCTTTCAAGAACACCAT
GCTCGCGGTGCAGGAGCTCCTCCTGGCGGCGACGTCTCACGGCCTAGCCA
CGTGCCCGATGGAGGGTTTCGACATGAGAAGATTGCGAAAGGCGCTACGC
ATTCCGTTGCGGTACTCTGTCCCGATCGTGGTCAGCATCGGCTACCCGTC
GGACGATCGGCGAGAGATCAAGACCCTCAGGCTGTAGATAAAACCCATCA
GGCTTGGTGGATCCATTCGGAACCCTTCGTCATCGTTGACTGCCGCAGAA
TGGAAAATTCGCGAGCACCCCGCCTACTGGCCGGTGGGTTGTCCTCACAC
GCTGTTGCCGCTCGTCATGCTGAACCAGCTGCACACGCGCCACACTGTCG
AAACACTTTGTACACTGTACAGAAAGCGCACGCGCTTCAAAACCTCTAGT
TCTGGACCACGCTGGGGTTCTTAGTTCGTAGAGTCAAACTACGTACGGCC
GCCATTTCGTGTTACAATAGTGTAGGGGTTCTTAACCGAGCTCACAATTG
GTGCTAAAACTTTTGGAATTGAGTAGTTTGAGGCTCAACTTTGCTACCGA
GTTTTAAGTTCGGGCGCTTGCTGTATTGCTCCAATCCCCCGCTCCTATCT
TCTTCTGCGGGATCTGCTGCTCGCTGATTGGTCGAGGGAAGATTCCCTCC
GGAGGAGGTATTGCACCGAGAGGAGTTCGGCACGCCTCTGGAAGGCGTTC
CTTCGCTCTGAAACGGCCGGCCCTCGAATGATACGGACGGTGGTGGCACG
GCATTCCGGACGGCAGGTCCCCTTCACACCACAAACAAGAGGGCACGTGT
AGCGGGATTCCAAACGTCATACCCTAAACTGGCTGAAGGGGCCGCTCAGG
CGGGGAGGGCGGAGGGGAGGGGGGTCGATTTCGCACGATGTTTTCCCGCC
ACGCCCCCTCGTAAGCATATTATGTTTAGACTGCGAAGTTTAGATTTGGT
ATACAATGGACTGCAAGGGTGGAAGCTCAACTCTGTCTGCAATTATTGTG
TTGTGTGCAGGATATTTTCTATGGCAGTACCCGAGCAGAAGTTGTCTTCG
CATCCTTTCATCCCAGCCTTTTGTCTTGGCGCCTAACGCTTTTTTTGTAA
ATGCTTCGGTGTGAGAACTGCATCTAGTTGTACCATGAGCGAACGCGCTC
AATCTATCTTTACTTTGCGTATATGGAAGAGTTCCTCGACCTGTCTTGTC
AATGTTAGCGTTCCTTGTGTGCAACTATATGCACAGCACGGCCGGCGCCG
CTGCACGTAGTTAGCTGCAAGACCAGTAGCTTCAAGATGAGAAGACAGCA
CGCCAAGAGTAGGCCAGTACATTTGTGTCCTCAAGCCAGAAACAAGGCAG
AATGGGCAACAGCGATCCTTGAAGTACATGCAAAACTTAGGCACGGAGTT
GTTCCTCTCTAGATACTGAACAGTAGTACCAAGGGAAGGGCAGGACGTTA
GGAATCCCGCAACACGTGCCGTCTTGCCCCATACAGCAACAACGACCCAC
CCACCCAGCGCTTATTCGTGGTACACACGACACACGTTTTAGTTTTTCAC
GAGAAGCTTCAGTAGCAGCAGCAGCGGCAGCAGCGGCAACAACAGTGCTG
CCATTCAGCAGGGTCTTCCAAGCGGAGAAGGAGGCTATGGCGTGAGTGAT
ATATACATGATTTTGCATGTGCGAAAATTAGCTTCTTGATGCGGCATGGT
CGGGTTCACTACTGGAGCTTCAGAGGTTGGTTTAGGTATGTTGTCGCACC
AGAGTTCGCGTCTGTCTGTGTATGTAGCAGGTGTATTTTTGATGAAGGGA
ACGCGGCTGAAGCTTTTCATTCACATGCCGTTGACCAGAGAGAAAAAACA
TTTGAAA back to topprotein sequence of EsuBft559_7a-0001 >EsuBft559_7 ID=EsuBft559_7|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MLAEEGWPKGFINKVPLYLSVFSTGHNRLLRLPLVAAKKLSFAVVRRLGK
GMPTVSGAEAWAFKNTMLAVQELLLAATSHGLATCPMEGFDMRRLRKALR
IPLRYSVPIVVSIGYPSDDRREIKTLRL back to topmRNA from alignment at Scaffold_230:218561..221477+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft559_7a-0001 ID=EsuBft559_7a-0001|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2917bp|location=Sequence derived from alignment at Scaffold_230:218561..221477+ (Ectocarpus subulatus male Bft15b)
ATGCTAGCGGAAGAGGGCTGGCCCAAGGGATTCATCAATAAGGTTCCCCT
CTACTTGTCGGTGTTCTCGACGGGACACAACCGGCTTCTCCGGCTTCCAC
TGGTCGCAGCGAAGAAGCTGTCGTTCGCGGTGGTGCGGAGGCTCGGGAAG
GGGATGCCCACTGTGTCGGGGGCGGAGGCGTGGGCTTTCAAGAACACCAT
GCTCGCGGTGCAGGTACGGCAGCGCTCACCGCGTCCGATGGGGTTAGTTG
CCGCGCTTTTCTTCCTGGGGAGCGTAATATACCCCTTTTTGGATGACATT
TGTTATTTGTCTCTTTCTCCCCGGAAGTGCGCGTGTTGTTGAAACGTGCC
GCGATAAGTTCGAATCGCCTCGGCCTGGTCTGACGCGTGGTGATTGGAGA
ACGAGCTGAGCTGTAAGAACGACTGGTGTTCTGCTTTCGTGCTTTCGTGT
GCTAACAACTGGTAGTGTCTTGCGCGACCGACCCGTCGGTTTAGGGGACT
TTTGAGGCCCTCTTGTACTTGTGGCGGCTCGGGGAAGGATCTCGATGTGC
GCGAGCGCGAGACGCTGGCCCTTGCCCCGGTTTCCGTTGGAATAGGTGCA
TTACACTTTTTCATTCGAAGGGAGGACAATGCATTGATCTCCCTGCTTCT
TTTTACCTGGACCCACTCACGCTTACATAGTAACCAGTCAAGGTTTGAGG
CTTCGGAAGGATGATTCACCACGCAGCTCGTGCTATCTCTCTTTTTGCCT
CCTCTGTGTTCATGAACCGGTGGGAGCTTCAGCAGAGAAACGAGGTAAAT
TTTATCTTCGTGATAAAGCCACCATTAGAGCGAAGAGTTGTCAACGTCGA
CATATTGCCAGACCTATTTCATGCAACGGTGCTCATGAAATGACAAGATA
CGCGGTGTGGTTTTTGCGGCGGTCTATAATCTCATCACGACAGGAGCTCC
TCCTGGCGGCGACGTCTCACGGCCTAGCCACGTGCCCGATGGAGGGTTTC
GACATGAGAAGATTGCGAAAGGCGCTACGCATTCCGTTGCGGTACTCTGT
CCCGATCGTGGTCAGCATCGGCTACCCGTCGGACGATCGGCGAGAGATCA
AGACCCTCAGGTAGGCACTCGAAGGACCGGCGTCTTTAAACCGCACATGT
AGGTGTGTTGCCTGTTTCGGCGTAAGTTCAGTTCCGCTTCCTTTACTACG
TTGACGCTTCCACTTGCAGCAGCGGTCTTGCTTCTCTCAGGCTGTAGATA
AAACCCATCAGGCTTGGTGGATCCATTCGGAACCCTTCGTCATCGTTGAC
TGCCGCAGAATGGAAAATTCGCGAGCACCCCGCCTACTGGCCGGTGGGTT
GTCCTCACACGCTGTTGCCGCTCGTCATGCTGAACCAGCTGCACACGCGC
CACACTGTCGAAACACTTTGTACACTGTACAGAAAGCGCACGCGCTTCAA
AACCTCTAGTTCTGGACCACGCTGGGGTTCTTAGTTCGTAGAGTCAAACT
ACGTACGGCCGCCATTTCGTGTTACAATAGTGTAGGGGTTCTTAACCGAG
CTCACAATTGGTGCTAAAACTTTTGGAATTGAGTAGTTTGAGGCTCAACT
TTGCTACCGAGTTTTAAGTTCGGGCGCTTGCTGTATTGCTCCAATCCCCC
GCTCCTATCTTCTTCTGCGGGATCTGCTGCTCGCTGATTGGTCGAGGGAA
GATTCCCTCCGGAGGAGGTATTGCACCGAGAGGAGTTCGGCACGCCTCTG
GAAGGCGTTCCTTCGCTCTGAAACGGCCGGCCCTCGAATGATACGGACGG
TGGTGGCACGGCATTCCGGACGGCAGGTCCCCTTCACACCACAAACAAGA
GGGCACGTGTAGCGGGATTCCAAACGTCATACCCTAAACTGGCTGAAGGG
GCCGCTCAGGCGGGGAGGGCGGAGGGGAGGGGGGTCGATTTCGCACGATG
TTTTCCCGCCACGCCCCCTCGTAAGCATATTATGTTTAGACTGCGAAGTT
TAGATTTGGTATACAATGGACTGCAAGGGTGGAAGCTCAACTCTGTCTGC
AATTATTGTGTTGTGTGCAGGATATTTTCTATGGCAGTACCCGAGCAGAA
GTTGTCTTCGCATCCTTTCATCCCAGCCTTTTGTCTTGGCGCCTAACGCT
TTTTTTGTAAATGCTTCGGTGTGAGAACTGCATCTAGTTGTACCATGAGC
GAACGCGCTCAATCTATCTTTACTTTGCGTATATGGAAGAGTTCCTCGAC
CTGTCTTGTCAATGTTAGCGTTCCTTGTGTGCAACTATATGCACAGCACG
GCCGGCGCCGCTGCACGTAGTTAGCTGCAAGACCAGTAGCTTCAAGATGA
GAAGACAGCACGCCAAGAGTAGGCCAGTACATTTGTGTCCTCAAGCCAGA
AACAAGGCAGAATGGGCAACAGCGATCCTTGAAGTACATGCAAAACTTAG
GCACGGAGTTGTTCCTCTCTAGATACTGAACAGTAGTACCAAGGGAAGGG
CAGGACGTTAGGAATCCCGCAACACGTGCCGTCTTGCCCCATACAGCAAC
AACGACCCACCCACCCAGCGCTTATTCGTGGTACACACGACACACGTTTT
AGTTTTTCACGAGAAGCTTCAGTAGCAGCAGCAGCGGCAGCAGCGGCAAC
AACAGTGCTGCCATTCAGCAGGGTCTTCCAAGCGGAGAAGGAGGCTATGG
CGTGAGTGATATATACATGATTTTGCATGTGCGAAAATTAGCTTCTTGAT
GCGGCATGGTCGGGTTCACTACTGGAGCTTCAGAGGTTGGTTTAGGTATG
TTGTCGCACCAGAGTTCGCGTCTGTCTGTGTATGTAGCAGGTGTATTTTT
GATGAAGGGAACGCGGCTGAAGCTTTTCATTCACATGCCGTTGACCAGAG
AGAAAAAACATTTGAAA back to topCoding sequence (CDS) from alignment at Scaffold_230:218561..221477+ >EsuBft559_7a-0001 ID=EsuBft559_7a-0001|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_230:218561..221477+ (Ectocarpus subulatus male Bft15b)
ATGCTAGCGGAAGAGGGCTGGCCCAAGGGATTCATCAATAAGGTTCCCCT
CTACTTGTCGGTGTTCTCGACGGGACACAACCGGCTTCTCCGGCTTCCAC
TGGTCGCAGCGAAGAAGCTGTCGTTCGCGGTGGTGCGGAGGCTCGGGAAG
GGGATGCCCACTGTGTCGGGGGCGGAGGCGTGGGCTTTCAAGAACACCAT
GCTCGCGGTGCAGGAGCTCCTCCTGGCGGCGACGTCTCACGGCCTAGCCA
CGTGCCCGATGGAGGGTTTCGACATGAGAAGATTGCGAAAGGCGCTACGC
ATTCCGTTGCGGTACTCTGTCCCGATCGTGGTCAGCATCGGCTACCCGTC
GGACGATCGGCGAGAGATCAAGACCCTCAGGCTGTAG back to top
|