EsuBft559_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft559_7a-0001
Unique Name	EsuBft559_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_230	contig	Scaffold_230:218561..221477 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FT60
ProteomeId	EsuBft559_7
Protein domains	PTHR23026
Protein domains	IPR000415
Protein domains	IPR029479
Owner	apollo_admin@sb-roscoff.fr
Note	protein os:synechocystis (strain pcc 6803 kazusa) gn:drga pe:1 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	2057
Hectar predicted targeting category	other localisation
Evalue	2.1e-80
EggNOG OGs	COG0778@1\|root,2RZ0D@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Nitroreductase family
COG category	C

Cross References

External references for this mRNA


Database	Accession
GO	0016491

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft559_7a	EsuBft559_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_230 218561..221477 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft559_7a-0001-exon	agat-exon-74092	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 218561..218773 +
EsuBft559_7a-0001-exon	EsuBft559_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 219504..219670 +
EsuBft559_7a-0001-exon	agat-exon-74091	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 219801..221477 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft559_7a-0001-cds	EsuBft559_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_230 218561..218773 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft559_7a-0001-exon	agat-three_prime_utr-18370	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_230 219808..221477 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft559_7a-0001	EsuBft559_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_230 218561..219807 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:218561..221477+
coding sequence from alignment at Scaffold_230:218561..221477+

spliced messenger RNA

>EsuBft559_7a-0001 ID=EsuBft559_7a-0001|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2057bp|location=Sequence derived from alignment at Scaffold_230:218561..221477+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGCGGAAGAGGGCTGGCCCAAGGGATTCATCAATAAGGTTCCCCT
CTACTTGTCGGTGTTCTCGACGGGACACAACCGGCTTCTCCGGCTTCCAC
TGGTCGCAGCGAAGAAGCTGTCGTTCGCGGTGGTGCGGAGGCTCGGGAAG
GGGATGCCCACTGTGTCGGGGGCGGAGGCGTGGGCTTTCAAGAACACCAT
GCTCGCGGTGCAGGAGCTCCTCCTGGCGGCGACGTCTCACGGCCTAGCCA
CGTGCCCGATGGAGGGTTTCGACATGAGAAGATTGCGAAAGGCGCTACGC
ATTCCGTTGCGGTACTCTGTCCCGATCGTGGTCAGCATCGGCTACCCGTC
GGACGATCGGCGAGAGATCAAGACCCTCAGGCTGTAGATAAAACCCATCA
GGCTTGGTGGATCCATTCGGAACCCTTCGTCATCGTTGACTGCCGCAGAA
TGGAAAATTCGCGAGCACCCCGCCTACTGGCCGGTGGGTTGTCCTCACAC
GCTGTTGCCGCTCGTCATGCTGAACCAGCTGCACACGCGCCACACTGTCG
AAACACTTTGTACACTGTACAGAAAGCGCACGCGCTTCAAAACCTCTAGT
TCTGGACCACGCTGGGGTTCTTAGTTCGTAGAGTCAAACTACGTACGGCC
GCCATTTCGTGTTACAATAGTGTAGGGGTTCTTAACCGAGCTCACAATTG
GTGCTAAAACTTTTGGAATTGAGTAGTTTGAGGCTCAACTTTGCTACCGA
GTTTTAAGTTCGGGCGCTTGCTGTATTGCTCCAATCCCCCGCTCCTATCT
TCTTCTGCGGGATCTGCTGCTCGCTGATTGGTCGAGGGAAGATTCCCTCC
GGAGGAGGTATTGCACCGAGAGGAGTTCGGCACGCCTCTGGAAGGCGTTC
CTTCGCTCTGAAACGGCCGGCCCTCGAATGATACGGACGGTGGTGGCACG
GCATTCCGGACGGCAGGTCCCCTTCACACCACAAACAAGAGGGCACGTGT
AGCGGGATTCCAAACGTCATACCCTAAACTGGCTGAAGGGGCCGCTCAGG
CGGGGAGGGCGGAGGGGAGGGGGGTCGATTTCGCACGATGTTTTCCCGCC
ACGCCCCCTCGTAAGCATATTATGTTTAGACTGCGAAGTTTAGATTTGGT
ATACAATGGACTGCAAGGGTGGAAGCTCAACTCTGTCTGCAATTATTGTG
TTGTGTGCAGGATATTTTCTATGGCAGTACCCGAGCAGAAGTTGTCTTCG
CATCCTTTCATCCCAGCCTTTTGTCTTGGCGCCTAACGCTTTTTTTGTAA
ATGCTTCGGTGTGAGAACTGCATCTAGTTGTACCATGAGCGAACGCGCTC
AATCTATCTTTACTTTGCGTATATGGAAGAGTTCCTCGACCTGTCTTGTC
AATGTTAGCGTTCCTTGTGTGCAACTATATGCACAGCACGGCCGGCGCCG
CTGCACGTAGTTAGCTGCAAGACCAGTAGCTTCAAGATGAGAAGACAGCA
CGCCAAGAGTAGGCCAGTACATTTGTGTCCTCAAGCCAGAAACAAGGCAG
AATGGGCAACAGCGATCCTTGAAGTACATGCAAAACTTAGGCACGGAGTT
GTTCCTCTCTAGATACTGAACAGTAGTACCAAGGGAAGGGCAGGACGTTA
GGAATCCCGCAACACGTGCCGTCTTGCCCCATACAGCAACAACGACCCAC
CCACCCAGCGCTTATTCGTGGTACACACGACACACGTTTTAGTTTTTCAC
GAGAAGCTTCAGTAGCAGCAGCAGCGGCAGCAGCGGCAACAACAGTGCTG
CCATTCAGCAGGGTCTTCCAAGCGGAGAAGGAGGCTATGGCGTGAGTGAT
ATATACATGATTTTGCATGTGCGAAAATTAGCTTCTTGATGCGGCATGGT
CGGGTTCACTACTGGAGCTTCAGAGGTTGGTTTAGGTATGTTGTCGCACC
AGAGTTCGCGTCTGTCTGTGTATGTAGCAGGTGTATTTTTGATGAAGGGA
ACGCGGCTGAAGCTTTTCATTCACATGCCGTTGACCAGAGAGAAAAAACA
TTTGAAA

protein sequence of EsuBft559_7a-0001

>EsuBft559_7 ID=EsuBft559_7|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MLAEEGWPKGFINKVPLYLSVFSTGHNRLLRLPLVAAKKLSFAVVRRLGK
GMPTVSGAEAWAFKNTMLAVQELLLAATSHGLATCPMEGFDMRRLRKALR
IPLRYSVPIVVSIGYPSDDRREIKTLRL

mRNA from alignment at Scaffold_230:218561..221477+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft559_7a-0001 ID=EsuBft559_7a-0001|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2917bp|location=Sequence derived from alignment at Scaffold_230:218561..221477+ (Ectocarpus subulatus male Bft15b)
ATGCTAGCGGAAGAGGGCTGGCCCAAGGGATTCATCAATAAGGTTCCCCT
CTACTTGTCGGTGTTCTCGACGGGACACAACCGGCTTCTCCGGCTTCCAC
TGGTCGCAGCGAAGAAGCTGTCGTTCGCGGTGGTGCGGAGGCTCGGGAAG
GGGATGCCCACTGTGTCGGGGGCGGAGGCGTGGGCTTTCAAGAACACCAT
GCTCGCGGTGCAGGTACGGCAGCGCTCACCGCGTCCGATGGGGTTAGTTG
CCGCGCTTTTCTTCCTGGGGAGCGTAATATACCCCTTTTTGGATGACATT
TGTTATTTGTCTCTTTCTCCCCGGAAGTGCGCGTGTTGTTGAAACGTGCC
GCGATAAGTTCGAATCGCCTCGGCCTGGTCTGACGCGTGGTGATTGGAGA
ACGAGCTGAGCTGTAAGAACGACTGGTGTTCTGCTTTCGTGCTTTCGTGT
GCTAACAACTGGTAGTGTCTTGCGCGACCGACCCGTCGGTTTAGGGGACT
TTTGAGGCCCTCTTGTACTTGTGGCGGCTCGGGGAAGGATCTCGATGTGC
GCGAGCGCGAGACGCTGGCCCTTGCCCCGGTTTCCGTTGGAATAGGTGCA
TTACACTTTTTCATTCGAAGGGAGGACAATGCATTGATCTCCCTGCTTCT
TTTTACCTGGACCCACTCACGCTTACATAGTAACCAGTCAAGGTTTGAGG
CTTCGGAAGGATGATTCACCACGCAGCTCGTGCTATCTCTCTTTTTGCCT
CCTCTGTGTTCATGAACCGGTGGGAGCTTCAGCAGAGAAACGAGGTAAAT
TTTATCTTCGTGATAAAGCCACCATTAGAGCGAAGAGTTGTCAACGTCGA
CATATTGCCAGACCTATTTCATGCAACGGTGCTCATGAAATGACAAGATA
CGCGGTGTGGTTTTTGCGGCGGTCTATAATCTCATCACGACAGGAGCTCC
TCCTGGCGGCGACGTCTCACGGCCTAGCCACGTGCCCGATGGAGGGTTTC
GACATGAGAAGATTGCGAAAGGCGCTACGCATTCCGTTGCGGTACTCTGT
CCCGATCGTGGTCAGCATCGGCTACCCGTCGGACGATCGGCGAGAGATCA
AGACCCTCAGGTAGGCACTCGAAGGACCGGCGTCTTTAAACCGCACATGT
AGGTGTGTTGCCTGTTTCGGCGTAAGTTCAGTTCCGCTTCCTTTACTACG
TTGACGCTTCCACTTGCAGCAGCGGTCTTGCTTCTCTCAGGCTGTAGATA
AAACCCATCAGGCTTGGTGGATCCATTCGGAACCCTTCGTCATCGTTGAC
TGCCGCAGAATGGAAAATTCGCGAGCACCCCGCCTACTGGCCGGTGGGTT
GTCCTCACACGCTGTTGCCGCTCGTCATGCTGAACCAGCTGCACACGCGC
CACACTGTCGAAACACTTTGTACACTGTACAGAAAGCGCACGCGCTTCAA
AACCTCTAGTTCTGGACCACGCTGGGGTTCTTAGTTCGTAGAGTCAAACT
ACGTACGGCCGCCATTTCGTGTTACAATAGTGTAGGGGTTCTTAACCGAG
CTCACAATTGGTGCTAAAACTTTTGGAATTGAGTAGTTTGAGGCTCAACT
TTGCTACCGAGTTTTAAGTTCGGGCGCTTGCTGTATTGCTCCAATCCCCC
GCTCCTATCTTCTTCTGCGGGATCTGCTGCTCGCTGATTGGTCGAGGGAA
GATTCCCTCCGGAGGAGGTATTGCACCGAGAGGAGTTCGGCACGCCTCTG
GAAGGCGTTCCTTCGCTCTGAAACGGCCGGCCCTCGAATGATACGGACGG
TGGTGGCACGGCATTCCGGACGGCAGGTCCCCTTCACACCACAAACAAGA
GGGCACGTGTAGCGGGATTCCAAACGTCATACCCTAAACTGGCTGAAGGG
GCCGCTCAGGCGGGGAGGGCGGAGGGGAGGGGGGTCGATTTCGCACGATG
TTTTCCCGCCACGCCCCCTCGTAAGCATATTATGTTTAGACTGCGAAGTT
TAGATTTGGTATACAATGGACTGCAAGGGTGGAAGCTCAACTCTGTCTGC
AATTATTGTGTTGTGTGCAGGATATTTTCTATGGCAGTACCCGAGCAGAA
GTTGTCTTCGCATCCTTTCATCCCAGCCTTTTGTCTTGGCGCCTAACGCT
TTTTTTGTAAATGCTTCGGTGTGAGAACTGCATCTAGTTGTACCATGAGC
GAACGCGCTCAATCTATCTTTACTTTGCGTATATGGAAGAGTTCCTCGAC
CTGTCTTGTCAATGTTAGCGTTCCTTGTGTGCAACTATATGCACAGCACG
GCCGGCGCCGCTGCACGTAGTTAGCTGCAAGACCAGTAGCTTCAAGATGA
GAAGACAGCACGCCAAGAGTAGGCCAGTACATTTGTGTCCTCAAGCCAGA
AACAAGGCAGAATGGGCAACAGCGATCCTTGAAGTACATGCAAAACTTAG
GCACGGAGTTGTTCCTCTCTAGATACTGAACAGTAGTACCAAGGGAAGGG
CAGGACGTTAGGAATCCCGCAACACGTGCCGTCTTGCCCCATACAGCAAC
AACGACCCACCCACCCAGCGCTTATTCGTGGTACACACGACACACGTTTT
AGTTTTTCACGAGAAGCTTCAGTAGCAGCAGCAGCGGCAGCAGCGGCAAC
AACAGTGCTGCCATTCAGCAGGGTCTTCCAAGCGGAGAAGGAGGCTATGG
CGTGAGTGATATATACATGATTTTGCATGTGCGAAAATTAGCTTCTTGAT
GCGGCATGGTCGGGTTCACTACTGGAGCTTCAGAGGTTGGTTTAGGTATG
TTGTCGCACCAGAGTTCGCGTCTGTCTGTGTATGTAGCAGGTGTATTTTT
GATGAAGGGAACGCGGCTGAAGCTTTTCATTCACATGCCGTTGACCAGAG
AGAAAAAACATTTGAAA

Coding sequence (CDS) from alignment at Scaffold_230:218561..221477+

>EsuBft559_7a-0001 ID=EsuBft559_7a-0001|Name=EsuBft559_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_230:218561..221477+ (Ectocarpus subulatus male Bft15b)
ATGCTAGCGGAAGAGGGCTGGCCCAAGGGATTCATCAATAAGGTTCCCCT
CTACTTGTCGGTGTTCTCGACGGGACACAACCGGCTTCTCCGGCTTCCAC
TGGTCGCAGCGAAGAAGCTGTCGTTCGCGGTGGTGCGGAGGCTCGGGAAG
GGGATGCCCACTGTGTCGGGGGCGGAGGCGTGGGCTTTCAAGAACACCAT
GCTCGCGGTGCAGGAGCTCCTCCTGGCGGCGACGTCTCACGGCCTAGCCA
CGTGCCCGATGGAGGGTTTCGACATGAGAAGATTGCGAAAGGCGCTACGC
ATTCCGTTGCGGTACTCTGTCCCGATCGTGGTCAGCATCGGCTACCCGTC
GGACGATCGGCGAGAGATCAAGACCCTCAGGCTGTAG