EsuBft144_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_10a-0001
Unique NameEsuBft144_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:516153..518006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G2K5
ProteomeIdEsuBft144_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length112
Hectar predicted targeting categoryother localisation
Evalue1.5e-07
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionEsV-1-21
Ec32 orthologEc-11_002570.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionspectrin binding
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_10aEsuBft144_10aEctocarpus subulatus male Bft15bgeneScaffold_228 516153..518006 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_10a-0001-exonEsuBft144_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 516153..516462 +
EsuBft144_10a-0001-exonagat-exon-9013Ectocarpus subulatus male Bft15bexonScaffold_228 517188..518006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_10a-0001-cdsEsuBft144_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 516153..516434 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_10a-0001-exonagat-three_prime_utr-3954Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 516435..516462 +
EsuBft144_10a-0001-exonagat-three_prime_utr-3955Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 517188..518006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_10a-0001EsuBft144_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 516153..516434 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_10a-0001 ID=EsuBft144_10a-0001|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1129bp|location=Sequence derived from alignment at Scaffold_228:516153..518006+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCAAAACGTCGGAAACAACACTCCAACCGCGCCCGCCGCCGTCGC
CGGCGAGGAATCGCCTGAAGCTCACCCCAGAAGCCGCCCTAGGCTTGAGA
CACCGCCAAAAAGCGGTGCCGGCGGCAACAGCAGCACGGCAGGGGTGGAA
GGCGGCCAAAGCGGAATCTGTAAACTGGGTAGCGACAGTCCGAGGCCTGG
TGGCCTGAATGGTGACTCTGCAGCTTGGCTGACGAGCACGGGCGAAGAGG
CGATTTTCCGCCGCATCGTGATGTTCTTGTGAACAGGACTGCCGTCGTTC
AGCTGGCAAGGACGCCAATAGGTGCCGCATGTACATACATTTGCCTCCAA
TCGGTGCCGCATGTGCATACATTGCCTGCCAGAGCAAGCGGCCCAGCTTC
CGTTGAGGAGATTGAGGAGATTCGCAATAGCAGAAGGCGTACAGGAAATG
AGATCCCAAATGTGCGACGTGCTCGAATGCTGGTGATAGCCATCTTCGTA
ATTGCGACAAACTTGGAGCAATGCCTCTTCGAACTTTGGATGTTGTGGCC
GAATCCGTTGGCACTGCTGATATTCATGTCGACCGTAGATCCAAATGCAC
GGGGTTGTGCCTGCTGTACACGTGGGCGATCGAAGCCTCGAGGAAGCTGG
TGCACCGGAGTGGGGGGAGGAGGTTGGTCGTGCCATGTATTGTAGATCAC
TTCCGTTCCTCGCAGAAACGCGTGTGGCACGTCCGCACGTGGTATGTATG
TGGTGCTGATGCCCCTCAACCTTGCGAGGACAATCGGCTACACAGTCAAG
ACGAAGATAAGTATGTTGGGACGAACTCCTTGCGGTTCCCCAAAGATTAT
AGTGTGTGGGGTGTGCATGATGAGTGTTATTGAATTGTATTGATTGTCCT
ACAGTAGTTACGAGAATATATTTTCTTTGTCATGCCTTTCACATGTAGAC
TAGTCTTAAATTCTGTTGTAGGACCGCTTCATTGTAAGTTGAGATTTTGC
TGTGTGAGAATGCTTTCCATTTTGTCTTTTACCAGAGCGACCGGTGTTTT
AGTTCTTCTGAGATACAACCCGTGCGCGGGTTTTGATTGTTCATATTCGA
TCGCCCCGGTCGTCTAGTTGGTATCCTCG
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protein sequence of EsuBft144_10a-0001

>EsuBft144_10 ID=EsuBft144_10|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MHQNVGNNTPTAPAAVAGEESPEAHPRSRPRLETPPKSGAGGNSSTAGVE
GGQSGICKLGSDSPRPGGLNGDSAAWLTSTGEEAIFRRIVMFL
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mRNA from alignment at Scaffold_228:516153..518006+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_10a-0001 ID=EsuBft144_10a-0001|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1854bp|location=Sequence derived from alignment at Scaffold_228:516153..518006+ (Ectocarpus subulatus male Bft15b)
ATGCACCAAAACGTCGGAAACAACACTCCAACCGCGCCCGCCGCCGTCGC
CGGCGAGGAATCGCCTGAAGCTCACCCCAGAAGCCGCCCTAGGCTTGAGA
CACCGCCAAAAAGCGGTGCCGGCGGCAACAGCAGCACGGCAGGGGTGGAA
GGCGGCCAAAGCGGAATCTGTAAACTGGGTAGCGACAGTCCGAGGCCTGG
TGGCCTGAATGGTGACTCTGCAGCTTGGCTGACGAGCACGGGCGAAGAGG
CGATTTTCCGCCGCATCGTGATGTTCTTGTGAACAGGACTGCCGTCGTTC
AGCTGGCAAGGTAGACTGTGTACTGAGTAATCACTAAACCTATTTTCAAT
ATTGGAGTGCGCGATCAAGCAGAGATATAAACCCTTTTCAAATTCTGTTG
GATTTCGTTGTCGGGGAGTCGGTCGCGAGTGTTTGTGCTAGAGCATGGTG
GGTTTTTAGTTTAGAGCGAGTGAAGGTCGACTCAAGAGCACGTTTTACTT
TACTTACCGCCTTCGTCCATAAGTCATTGGGCGCATGTTTCCCGCATGCT
GTGGGCAACCTTCGTCGAAGCAGGCGCTGGTGTGCAGGCCTATCCTACAC
CATTTGCTCACTATTTTCGTGGAAGCGAGGAGGATTTCATGAGGGTATTC
TTTGCCCGACCTCACCAACCTTGAAATATTGTAAAGCAAACGCGCCACAC
GCACAAATGTGCCCTGCCACAGCAAGAACGGCCTAACGCAGTAGCCGATG
TGTGTGTCGCTACTTATTTTAACTTGCCTTGCAAGTGTCCTGTGCGCTTC
CGAAATCCAGTCTGTCAGCCACAAGCCTTGGTGGCCTTCTCGCTTGTGCC
CTTGTGGTAACGTCGGTTCTCGGCGCAATAGGCCGGCCAAACCGTCTAGT
TCTTCATAGATATCGACTAGGTTTCGTTTACATTGGCGGCATGTTGGCTG
GCAGCCGTGACTTCTAATCCAGTGCATTCCGTCTCGCGCCCTTTTCCGAT
TCCGTTTGCCGCCGGTGTTATGGCCGACCTCACAGGACGCCAATAGGTGC
CGCATGTACATACATTTGCCTCCAATCGGTGCCGCATGTGCATACATTGC
CTGCCAGAGCAAGCGGCCCAGCTTCCGTTGAGGAGATTGAGGAGATTCGC
AATAGCAGAAGGCGTACAGGAAATGAGATCCCAAATGTGCGACGTGCTCG
AATGCTGGTGATAGCCATCTTCGTAATTGCGACAAACTTGGAGCAATGCC
TCTTCGAACTTTGGATGTTGTGGCCGAATCCGTTGGCACTGCTGATATTC
ATGTCGACCGTAGATCCAAATGCACGGGGTTGTGCCTGCTGTACACGTGG
GCGATCGAAGCCTCGAGGAAGCTGGTGCACCGGAGTGGGGGGAGGAGGTT
GGTCGTGCCATGTATTGTAGATCACTTCCGTTCCTCGCAGAAACGCGTGT
GGCACGTCCGCACGTGGTATGTATGTGGTGCTGATGCCCCTCAACCTTGC
GAGGACAATCGGCTACACAGTCAAGACGAAGATAAGTATGTTGGGACGAA
CTCCTTGCGGTTCCCCAAAGATTATAGTGTGTGGGGTGTGCATGATGAGT
GTTATTGAATTGTATTGATTGTCCTACAGTAGTTACGAGAATATATTTTC
TTTGTCATGCCTTTCACATGTAGACTAGTCTTAAATTCTGTTGTAGGACC
GCTTCATTGTAAGTTGAGATTTTGCTGTGTGAGAATGCTTTCCATTTTGT
CTTTTACCAGAGCGACCGGTGTTTTAGTTCTTCTGAGATACAACCCGTGC
GCGGGTTTTGATTGTTCATATTCGATCGCCCCGGTCGTCTAGTTGGTATC
CTCG
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Coding sequence (CDS) from alignment at Scaffold_228:516153..518006+

>EsuBft144_10a-0001 ID=EsuBft144_10a-0001|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_228:516153..518006+ (Ectocarpus subulatus male Bft15b)
ATGCACCAAAACGTCGGAAACAACACTCCAACCGCGCCCGCCGCCGTCGC
CGGCGAGGAATCGCCTGAAGCTCACCCCAGAAGCCGCCCTAGGCTTGAGA
CACCGCCAAAAAGCGGTGCCGGCGGCAACAGCAGCACGGCAGGGGTGGAA
GGCGGCCAAAGCGGAATCTGTAAACTGGGTAGCGACAGTCCGAGGCCTGG
TGGCCTGAATGGTGACTCTGCAGCTTGGCTGACGAGCACGGGCGAAGAGG
CGATTTTCCGCCGCATCGTGATGTTCTTGTGA
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