Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G2J7 |
| ProteomeId | EsuBft144_21 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SignalP-noTM |
| Protein domains | SSF117916 |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | TMhelix |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 103 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.39e-68 |
| EggNOG OGs | 2BCYA@1|root,2S115@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-11_002490.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft144_21a-0001 ID=EsuBft144_21a-0001|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1030bp|location=Sequence derived from alignment at Scaffold_228:431857..434523- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCCTCACAGCAGTAGTCCTCACATTCTCTTTCTCTGCTGCTGTGTCTTCA
CCGATGACGTGCTCGCCGTGCTTGAAAGCTTCCCTTCGTGTGGTAGCAGT
GGTAGCAGCAGCTTTGGCCCTCTGCTGCAGTAGTCGATGTTCGGCGTTCG
CGTTCACAGCACGGCTGTCTCCCTCAACAGCGGTCCTACGGCAGTCGCAC
AGCAGCAGCAGCAGCAGGTGCTCTGGGTCGTGGGATAGACGAGTGCAGGA
ACAGTTCAGAGCACTCGACACACGATCACGGGGAAGAAGCGAGACGCACT
TGGCCAACGGGGTAGGGCGAGGCCTCTACATGGCACAAGAGACGCTCATC
CTTACGGAGGAGAACGTCGTCGCTGTGCTGGCCGAAGCAAAACGAGAGCT
CAGCACGTTGTTTGGCAACAACGCAGAGAACACGGCCGTTGGGATTACTG
GCGACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGTCCGTCTA
ACCGGAAGATTCTGGCACGAAAAGACCACTGTGCTTGCCCGTGTGGGCAA
CTTCGTGCAGACGCGCATCCCCGAATGCGTGGACGTCGAGATCGAAGACC
CTTCGCAGCTTGAGGACGCGGATCCTCCTCCAGGGCCAGGGCAGGCCGAA
ATGTAGATTGTGCCAACCAATACGATTATGCAACGCAGACCCGCATGGAT
GCTAGATAAATAGTGTTTTTGCCCAACATCTTGCGTCGGGATGAACGCGG
AGGTTGATTGACTGGAGTCGCGCGTTTTTTTCGGTGACCGCCCGTGGTAG
ATGACTCCTGTTTTGCTTCTTCTTTTTTTTTTGTGTGGGCGCGAAGAGGG
CATGCTGGAGTTTGGTGCATGCTGGCGCATGGTAATGCGTTTTTGTCTTG
TAGTAAATGATGTTTGTCGACGACATCAAAATAATATGTTTGGCCATTGT
TGTCGCTTCCCAAACGAATTCGAGCGTTAGGAAACTGATGGAAGCATACA
TGCCTCGATGACGGGTTCTTTCGAAATGCC back to topprotein sequence of EsuBft144_21a-0001 >EsuBft144_21 ID=EsuBft144_21|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MTCSPCLKASLRVVAVVAAALALCCSSRCSAFAFTARLSPSTAVLRQSHS
SSSSRCSGSWDRRVQEQFRALDTRSRGRSETHLANGVGRGLYMAQETLIL
TEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLT
GRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPPPGPGQAEM back to topmRNA from alignment at Scaffold_228:431857..434523- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft144_21a-0001 ID=EsuBft144_21a-0001|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2667bp|location=Sequence derived from alignment at Scaffold_228:431857..434523- (Ectocarpus subulatus male Bft15b)
TCCTCACAGCAGTAGTCCTCACATTCTCTTTCTCTGCTGCTGTGTCTTCA
CCGATGACGTGCTCGCCGTGCTTGAAAGCTTCCCTTCGTGTGGTAGCAGT
GGTAGCAGCAGCTTTGGCCCTCTGCTGCAGTAGTCGATGTTCGGCGTTCG
CGTTCACAGCACGGCTGTCTCCCTCAACAGCGGTCCTACGGCAGTCGCAC
AGCAGCAGCAGCAGCAGGTGCTCTGGGTCGTGGGATAGACGAGTGCAGGA
ACAGTTCAGGTATCCAGTGAACCTGATGGCTCGTGTGTGCTGCCTACCCC
AGAGAGTGTCCATGGAGGTGCTGCGTTTGGTGGCATTTTAGTTGATCATG
TGCCAGTCGTCTAGTCGATCAGATTCATGAGCGCCTGCCTGTTGTCCCAA
CATCAACCAACCTCGCACGGCCGTTGCGCACATGGAACCCGGGGGCTCCT
GGCTGCTTTTACCACGAACGCTTTTGCCATCGCGCTAAACCGGAAAACGA
ACTCAAAGACAAAAACACCGCCACGTATCACGACAATGCTGCCTGTGGGT
ACTACGTAACCCGTTCCTTGCTACTCGGAGTGTATCACTGCTGTTTGGTA
CTGCTGCCCTGCCGCATATTGACGGCAAAAGAAGCTGGACACTCCATGTA
GACCAACTACACTCCTGGGCAGGATCCTTCATGAAGTGCCACGTGATCGC
ACACAACACTACCTTAGCACTTCTATGCCGCCTTTGATCTGTAGCAGAGC
ACTCGACACACGATCACGGGGAAGAAGCGAGACGCACTTGGCCAACGGGG
TAGGGCGAGGCCTCTACATGGCACAAGAGACGCTCATCCTTACGGAGGAG
AACGTCGTCGCTGTGCTGGCCGAAGTGAGGCATATCCCTATCAACATGTT
GCGTTACTCAAGATATCATAACTTGTAATCAAAAGTTAAATACTTATACC
TGGATGAGCTTTGGACTGCCGTCAGCGAATGGCTGGTTTTCCAGTGGTCA
TCATGCTTTTCGACAGGTACCACCGCGACGTCGTGACGACGCGTGTGCGC
AGAAGTAGAAAGGAGGGAGCTGAGTCATGGTTTCACAAGCGTAAAACTAA
GAGCAAAGGCAGTGCTTTGCCACTGGGTCGAAACTGGTGAAAATTGAACA
GTCCCATGTGGGAACTCGATCGTACCACCTTGGCCTCTGGCATGTGTCCA
GTGCAGGCCGACCTACAGCAGTAGCACCTATCCCATGGACGGGGTGCATT
ACTGTCCTTCACGCGTTATGTAGTCAACAGGCCGTGTAACCCGTAACAGG
CCGACTTTTACCGCCAGCCAGATGGTGTGTCTCGGGATAGTTGATAGTTC
CGCACTCGCAATATTATTTTGCTCAGCAGTGCAATATAGCTCGTCGCCCA
CTTGCTGGCTCTAGCGCCCTTCAAAAAAGCTCAACCTCTGCAACTGCTGT
TGCTGCTGGAACCAAGGAAGTTTCGATTGCGGGTATTCTTTTGCTTTCCT
CATGAGGACCTTTCACATTCCATCCATGCAACAGGCAAAACGAGAGCTCA
GCACGTTGTTTGGCAACAACGCAGAGAACACGGCCGTTGGGATTACTGGC
GACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGTCCGTCTAAC
CGGAAGATTCTGGCACGAAAAGACCACTGTGAGAGACTGTTCTACCGGGG
GGGGGGCGGGGGGGAGCGCACTCTTTTGTTTTTGGTACTGCAGCGGTTAG
GCATTGGCCACGCGTCTTCGAGAGGACGTATTCCCACAGGACCGATCACC
GATGGCTAATCGTTCCTTCTTGCTTGGCCAAAGGTGGCTCAATAATATCT
TGCGAACGGGGGGGCGAGATAACGAGCAAGGAGGCTGACCATGCCTATCA
TAACCAGATAGGGAGAGACAGAGAAAGCAGACAGAGGGATCGAGAGGGGA
CAGAGACATCGGCACGCGGTTGGACGATAAATGCACCACGGTGATACATG
CTGCTTTGTCTCCTTGCATTTTGTGAATCTGGCGGAATGCGTATCCCGCT
TACTTACGATGTCCACTTCATTGCCCGCAACTTTCATAATTTTCGGCGAG
CTACAGCAGTACATGTGTATTCGCCTGCTTCTCACATCCTCTGGGTTATT
GTCCGATGCCCCAACAGGTGCTTGCCCGTGTGGGCAACTTCGTGCAGACG
CGCATCCCCGAATGCGTGGACGTCGAGATCGAAGACCCTTCGCAGCTTGA
GGACGCGGATCCTCCTCCAGGGCCAGGGCAGGCCGAAATGTAGATTGTGC
CAACCAATACGATTATGCAACGCAGACCCGCATGGATGCTAGATAAATAG
TGTTTTTGCCCAACATCTTGCGTCGGGATGAACGCGGAGGTTGATTGACT
GGAGTCGCGCGTTTTTTTCGGTGACCGCCCGTGGTAGATGACTCCTGTTT
TGCTTCTTCTTTTTTTTTTGTGTGGGCGCGAAGAGGGCATGCTGGAGTTT
GGTGCATGCTGGCGCATGGTAATGCGTTTTTGTCTTGTAGTAAATGATGT
TTGTCGACGACATCAAAATAATATGTTTGGCCATTGTTGTCGCTTCCCAA
ACGAATTCGAGCGTTAGGAAACTGATGGAAGCATACATGCCTCGATGACG
GGTTCTTTCGAAATGCC back to topCoding sequence (CDS) from alignment at Scaffold_228:431857..434523- >EsuBft144_21a-0001 ID=EsuBft144_21a-0001|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_228:431857..434523- (Ectocarpus subulatus male Bft15b)
ATGACGTGCTCGCCGTGCTTGAAAGCTTCCCTTCGTGTGGTAGCAGTGGT
AGCAGCAGCTTTGGCCCTCTGCTGCAGTAGTCGATGTTCGGCGTTCGCGT
TCACAGCACGGCTGTCTCCCTCAACAGCGGTCCTACGGCAGTCGCACAGC
AGCAGCAGCAGCAGGTGCTCTGGGTCGTGGGATAGACGAGTGCAGGAACA
GTTCAGAGCACTCGACACACGATCACGGGGAAGAAGCGAGACGCACTTGG
CCAACGGGGTAGGGCGAGGCCTCTACATGGCACAAGAGACGCTCATCCTT
ACGGAGGAGAACGTCGTCGCTGTGCTGGCCGAAGCAAAACGAGAGCTCAG
CACGTTGTTTGGCAACAACGCAGAGAACACGGCCGTTGGGATTACTGGCG
ACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGTCCGTCTAACC
GGAAGATTCTGGCACGAAAAGACCACTGTGCTTGCCCGTGTGGGCAACTT
CGTGCAGACGCGCATCCCCGAATGCGTGGACGTCGAGATCGAAGACCCTT
CGCAGCTTGAGGACGCGGATCCTCCTCCAGGGCCAGGGCAGGCCGAAATG
TAG back to top
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