EsuBft144_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_21a-0001
Unique NameEsuBft144_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:431857..434523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G2J7
ProteomeIdEsuBft144_21
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSignalP-noTM
Protein domainsSSF117916
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length103
Hectar predicted targeting categorysignal peptide
Evalue1.39e-68
EggNOG OGs2BCYA@1|root,2S115@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002490.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_21aEsuBft144_21aEctocarpus subulatus male Bft15bgeneScaffold_228 431857..434523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_21a-0001EsuBft144_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 432231..434470 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_21a-0001-exonagat-exon-9070Ectocarpus subulatus male Bft15bexonScaffold_228 431857..432356 -
EsuBft144_21a-0001-exonagat-exon-9071Ectocarpus subulatus male Bft15bexonScaffold_228 432846..432989 -
EsuBft144_21a-0001-exonagat-exon-9069Ectocarpus subulatus male Bft15bexonScaffold_228 433650..433776 -
EsuBft144_21a-0001-exonEsuBft144_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 434265..434523 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_21a-0001-exonagat-three_prime_utr-3966Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 431857..432230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_21a-0001-cdsEsuBft144_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 432231..432356 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_21a-0001-exonagat-five_prime_utr-2610Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 434471..434523 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_21a-0001 ID=EsuBft144_21a-0001|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1030bp|location=Sequence derived from alignment at Scaffold_228:431857..434523- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCTCACAGCAGTAGTCCTCACATTCTCTTTCTCTGCTGCTGTGTCTTCA
CCGATGACGTGCTCGCCGTGCTTGAAAGCTTCCCTTCGTGTGGTAGCAGT
GGTAGCAGCAGCTTTGGCCCTCTGCTGCAGTAGTCGATGTTCGGCGTTCG
CGTTCACAGCACGGCTGTCTCCCTCAACAGCGGTCCTACGGCAGTCGCAC
AGCAGCAGCAGCAGCAGGTGCTCTGGGTCGTGGGATAGACGAGTGCAGGA
ACAGTTCAGAGCACTCGACACACGATCACGGGGAAGAAGCGAGACGCACT
TGGCCAACGGGGTAGGGCGAGGCCTCTACATGGCACAAGAGACGCTCATC
CTTACGGAGGAGAACGTCGTCGCTGTGCTGGCCGAAGCAAAACGAGAGCT
CAGCACGTTGTTTGGCAACAACGCAGAGAACACGGCCGTTGGGATTACTG
GCGACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGTCCGTCTA
ACCGGAAGATTCTGGCACGAAAAGACCACTGTGCTTGCCCGTGTGGGCAA
CTTCGTGCAGACGCGCATCCCCGAATGCGTGGACGTCGAGATCGAAGACC
CTTCGCAGCTTGAGGACGCGGATCCTCCTCCAGGGCCAGGGCAGGCCGAA
ATGTAGATTGTGCCAACCAATACGATTATGCAACGCAGACCCGCATGGAT
GCTAGATAAATAGTGTTTTTGCCCAACATCTTGCGTCGGGATGAACGCGG
AGGTTGATTGACTGGAGTCGCGCGTTTTTTTCGGTGACCGCCCGTGGTAG
ATGACTCCTGTTTTGCTTCTTCTTTTTTTTTTGTGTGGGCGCGAAGAGGG
CATGCTGGAGTTTGGTGCATGCTGGCGCATGGTAATGCGTTTTTGTCTTG
TAGTAAATGATGTTTGTCGACGACATCAAAATAATATGTTTGGCCATTGT
TGTCGCTTCCCAAACGAATTCGAGCGTTAGGAAACTGATGGAAGCATACA
TGCCTCGATGACGGGTTCTTTCGAAATGCC
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protein sequence of EsuBft144_21a-0001

>EsuBft144_21 ID=EsuBft144_21|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MTCSPCLKASLRVVAVVAAALALCCSSRCSAFAFTARLSPSTAVLRQSHS
SSSSRCSGSWDRRVQEQFRALDTRSRGRSETHLANGVGRGLYMAQETLIL
TEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLT
GRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPPPGPGQAEM
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mRNA from alignment at Scaffold_228:431857..434523-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_21a-0001 ID=EsuBft144_21a-0001|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2667bp|location=Sequence derived from alignment at Scaffold_228:431857..434523- (Ectocarpus subulatus male Bft15b)
TCCTCACAGCAGTAGTCCTCACATTCTCTTTCTCTGCTGCTGTGTCTTCA
CCGATGACGTGCTCGCCGTGCTTGAAAGCTTCCCTTCGTGTGGTAGCAGT
GGTAGCAGCAGCTTTGGCCCTCTGCTGCAGTAGTCGATGTTCGGCGTTCG
CGTTCACAGCACGGCTGTCTCCCTCAACAGCGGTCCTACGGCAGTCGCAC
AGCAGCAGCAGCAGCAGGTGCTCTGGGTCGTGGGATAGACGAGTGCAGGA
ACAGTTCAGGTATCCAGTGAACCTGATGGCTCGTGTGTGCTGCCTACCCC
AGAGAGTGTCCATGGAGGTGCTGCGTTTGGTGGCATTTTAGTTGATCATG
TGCCAGTCGTCTAGTCGATCAGATTCATGAGCGCCTGCCTGTTGTCCCAA
CATCAACCAACCTCGCACGGCCGTTGCGCACATGGAACCCGGGGGCTCCT
GGCTGCTTTTACCACGAACGCTTTTGCCATCGCGCTAAACCGGAAAACGA
ACTCAAAGACAAAAACACCGCCACGTATCACGACAATGCTGCCTGTGGGT
ACTACGTAACCCGTTCCTTGCTACTCGGAGTGTATCACTGCTGTTTGGTA
CTGCTGCCCTGCCGCATATTGACGGCAAAAGAAGCTGGACACTCCATGTA
GACCAACTACACTCCTGGGCAGGATCCTTCATGAAGTGCCACGTGATCGC
ACACAACACTACCTTAGCACTTCTATGCCGCCTTTGATCTGTAGCAGAGC
ACTCGACACACGATCACGGGGAAGAAGCGAGACGCACTTGGCCAACGGGG
TAGGGCGAGGCCTCTACATGGCACAAGAGACGCTCATCCTTACGGAGGAG
AACGTCGTCGCTGTGCTGGCCGAAGTGAGGCATATCCCTATCAACATGTT
GCGTTACTCAAGATATCATAACTTGTAATCAAAAGTTAAATACTTATACC
TGGATGAGCTTTGGACTGCCGTCAGCGAATGGCTGGTTTTCCAGTGGTCA
TCATGCTTTTCGACAGGTACCACCGCGACGTCGTGACGACGCGTGTGCGC
AGAAGTAGAAAGGAGGGAGCTGAGTCATGGTTTCACAAGCGTAAAACTAA
GAGCAAAGGCAGTGCTTTGCCACTGGGTCGAAACTGGTGAAAATTGAACA
GTCCCATGTGGGAACTCGATCGTACCACCTTGGCCTCTGGCATGTGTCCA
GTGCAGGCCGACCTACAGCAGTAGCACCTATCCCATGGACGGGGTGCATT
ACTGTCCTTCACGCGTTATGTAGTCAACAGGCCGTGTAACCCGTAACAGG
CCGACTTTTACCGCCAGCCAGATGGTGTGTCTCGGGATAGTTGATAGTTC
CGCACTCGCAATATTATTTTGCTCAGCAGTGCAATATAGCTCGTCGCCCA
CTTGCTGGCTCTAGCGCCCTTCAAAAAAGCTCAACCTCTGCAACTGCTGT
TGCTGCTGGAACCAAGGAAGTTTCGATTGCGGGTATTCTTTTGCTTTCCT
CATGAGGACCTTTCACATTCCATCCATGCAACAGGCAAAACGAGAGCTCA
GCACGTTGTTTGGCAACAACGCAGAGAACACGGCCGTTGGGATTACTGGC
GACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGTCCGTCTAAC
CGGAAGATTCTGGCACGAAAAGACCACTGTGAGAGACTGTTCTACCGGGG
GGGGGGCGGGGGGGAGCGCACTCTTTTGTTTTTGGTACTGCAGCGGTTAG
GCATTGGCCACGCGTCTTCGAGAGGACGTATTCCCACAGGACCGATCACC
GATGGCTAATCGTTCCTTCTTGCTTGGCCAAAGGTGGCTCAATAATATCT
TGCGAACGGGGGGGCGAGATAACGAGCAAGGAGGCTGACCATGCCTATCA
TAACCAGATAGGGAGAGACAGAGAAAGCAGACAGAGGGATCGAGAGGGGA
CAGAGACATCGGCACGCGGTTGGACGATAAATGCACCACGGTGATACATG
CTGCTTTGTCTCCTTGCATTTTGTGAATCTGGCGGAATGCGTATCCCGCT
TACTTACGATGTCCACTTCATTGCCCGCAACTTTCATAATTTTCGGCGAG
CTACAGCAGTACATGTGTATTCGCCTGCTTCTCACATCCTCTGGGTTATT
GTCCGATGCCCCAACAGGTGCTTGCCCGTGTGGGCAACTTCGTGCAGACG
CGCATCCCCGAATGCGTGGACGTCGAGATCGAAGACCCTTCGCAGCTTGA
GGACGCGGATCCTCCTCCAGGGCCAGGGCAGGCCGAAATGTAGATTGTGC
CAACCAATACGATTATGCAACGCAGACCCGCATGGATGCTAGATAAATAG
TGTTTTTGCCCAACATCTTGCGTCGGGATGAACGCGGAGGTTGATTGACT
GGAGTCGCGCGTTTTTTTCGGTGACCGCCCGTGGTAGATGACTCCTGTTT
TGCTTCTTCTTTTTTTTTTGTGTGGGCGCGAAGAGGGCATGCTGGAGTTT
GGTGCATGCTGGCGCATGGTAATGCGTTTTTGTCTTGTAGTAAATGATGT
TTGTCGACGACATCAAAATAATATGTTTGGCCATTGTTGTCGCTTCCCAA
ACGAATTCGAGCGTTAGGAAACTGATGGAAGCATACATGCCTCGATGACG
GGTTCTTTCGAAATGCC
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Coding sequence (CDS) from alignment at Scaffold_228:431857..434523-

>EsuBft144_21a-0001 ID=EsuBft144_21a-0001|Name=EsuBft144_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_228:431857..434523- (Ectocarpus subulatus male Bft15b)
ATGACGTGCTCGCCGTGCTTGAAAGCTTCCCTTCGTGTGGTAGCAGTGGT
AGCAGCAGCTTTGGCCCTCTGCTGCAGTAGTCGATGTTCGGCGTTCGCGT
TCACAGCACGGCTGTCTCCCTCAACAGCGGTCCTACGGCAGTCGCACAGC
AGCAGCAGCAGCAGGTGCTCTGGGTCGTGGGATAGACGAGTGCAGGAACA
GTTCAGAGCACTCGACACACGATCACGGGGAAGAAGCGAGACGCACTTGG
CCAACGGGGTAGGGCGAGGCCTCTACATGGCACAAGAGACGCTCATCCTT
ACGGAGGAGAACGTCGTCGCTGTGCTGGCCGAAGCAAAACGAGAGCTCAG
CACGTTGTTTGGCAACAACGCAGAGAACACGGCCGTTGGGATTACTGGCG
ACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGTCCGTCTAACC
GGAAGATTCTGGCACGAAAAGACCACTGTGCTTGCCCGTGTGGGCAACTT
CGTGCAGACGCGCATCCCCGAATGCGTGGACGTCGAGATCGAAGACCCTT
CGCAGCTTGAGGACGCGGATCCTCCTCCAGGGCCAGGGCAGGCCGAAATG
TAG
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