EsuBft144_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_26a-0001
Unique NameEsuBft144_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:372775..377488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft144_26
Protein domainsIPR017938
Protein domainsPTHR19446
Protein domainsIPR001433
Protein domainsIPR000477
Protein domainsCoil
Protein domainsG3DSA
Protein domainsSSF52343
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Notefruit protein pkiwi502 os:actinidia deliciosa gn:pkiwi502 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1536
Hectar predicted targeting categoryother localisation
Evalue1.3e-93
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Ec32 ortholog descriptionOxidoreductase FAD/NAD(P)-binding
Ec32 orthologEc-11_002290.3
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0016491
GO0055114
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_26aEsuBft144_26aEctocarpus subulatus male Bft15bgeneScaffold_228 372775..377488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_26a-0001EsuBft144_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 372775..377488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_26a-0001-exonagat-exon-9103Ectocarpus subulatus male Bft15bexonScaffold_228 372775..372985 -
EsuBft144_26a-0001-exonEsuBft144_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 374182..374340 -
EsuBft144_26a-0001-exonagat-exon-9105Ectocarpus subulatus male Bft15bexonScaffold_228 375346..375481 -
EsuBft144_26a-0001-exonagat-exon-9104Ectocarpus subulatus male Bft15bexonScaffold_228 376256..377262 -
EsuBft144_26a-0001-exonagat-exon-9106Ectocarpus subulatus male Bft15bexonScaffold_228 377466..377488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_26a-0001-cdsEsuBft144_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 372775..372985 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_26a-0001 ID=EsuBft144_26a-0001|Name=EsuBft144_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1536bp|location=Sequence derived from alignment at Scaffold_228:372775..377488- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAACGTCGAGAATGCGCGATTACGCGCTCTCCCACCGTTTGTCT
CAACCGAAGCCTTTTTTCGCTCTCCCCTCCCGCTCACATTGAGCAGGGGG
TCCCACAAGGTTGCACGCTGTCCCCACCATTGTTCCAGGTGTTCATCAAC
GATCTATTGGAAGTCGTAGAGGCAGTTCGAAAGGGAGTAAAAGTAGGGGA
CACGGAAACTTCGGTTTCAGGAATACTGTTTGCGGATGATTTTGTCGGTA
TGTCGGACACCCCTGAGGGACTGCAACTGCAAATCGACGCGGCGAAGAAG
TTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCAT
GGTATGCAACGAGGACAAGGAGGACCCAGTAGAACATAGATGGAAGTGGG
AGATCGAGGAGATTGCAGTATTGGACCAGTACACATACCTGGGAGTAGAG
ATCACAAAAGACTGCTCGTGGAATGCACACATGTCCAACGTAGCGGAAAA
GGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACC
TCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCG
CTAGAGTACGCAGGAGAAATATGTGAAGGAAATAAGAAGGTAGTGAAAGA
ACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCA
GGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTA
CGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGG
GATGGGAGAGGAGAGGTTGCCGAGAATTGCATGGGAGGCAAAGTGGGCAA
ACAAAAAGAGGGGTAGACAACCCAAGGAATGGGTCATGGTTGTAGAGGAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAG
GGAAGACATTTTTGAGCCACCTTTGGGAAGAGGGCCATTACGCGCTGACG
ATCGACGTCGGGGACATCGCCAAGGAGTACACGGTACCGGGCCAGTACGT
GCAGATCAAGGTGACCTCCAGCGATAAGCCGAGGTTCTTCGCGATCGCCT
CTCCCCCGGATGCCAGGGAGAACGACGCGACGGAGGCGCTGGTCGGGGTC
AAGGCCGGGGGCTCCGTGGAGGTTTCCCCCGTCATGGGCAAGGGGTTCCC
CATCACGGAGAACTTCACCGGATACAAGTACGACTTCCCCGTACAGAACG
TCGTGCTGTCGGCGTCGGGCACCGGTATCGCTCCTTTCCGCGCGGCAATC
GAGTCCGGGGCGCTGGAGCTGCCGGATGCGGACGATGACGGGGTGTTCGG
TCGGTCGTGCAAGCTGTACTGGGGCTGCCGCGACGAGGAGAGCATACCGT
GGAAGGACCGGGTGAAGGCGTGGGACAAGCAGGGCGTCGAGGTGGTGATC
GTCCTCTCTGAGCCAAGTGAGTTGAGAGCGGNNNNN
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protein sequence of EsuBft144_26a-0001

>EsuBft144_26 ID=EsuBft144_26|Name=EsuBft144_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=512bp
MFQRRECAITRSPTVCLNRSLFSLSPPAHIEQGVPQGCTLSPPLFQVFIN
DLLEVVEAVRKGVKVGDTETSVSGILFADDFVGMSDTPEGLQLQIDAAKK
FTDKWRLSANVKKSAVMVCNEDKEDPVEHRWKWEIEEIAVLDQYTYLGVE
ITKDCSWNAHMSNVAEKGKARAGKLHPILANRHLDTRIKLTVLKSVIVPP
LEYAGEICEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSL
RSGRDARKLTWQYRMCGMGEERLPRIAWEAKWANKKRGRQPKEWVMVVED
XXXXXXXXXXXXXXXXXXXXEKAGRDIVRIDRLGKTFLSHLWEEGHYALT
IDVGDIAKEYTVPGQYVQIKVTSSDKPRFFAIASPPDARENDATEALVGV
KAGGSVEVSPVMGKGFPITENFTGYKYDFPVQNVVLSASGTGIAPFRAAI
ESGALELPDADDDGVFGRSCKLYWGCRDEESIPWKDRVKAWDKQGVEVVI
VLSEPSELRAXX
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mRNA from alignment at Scaffold_228:372775..377488-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_26a-0001 ID=EsuBft144_26a-0001|Name=EsuBft144_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4714bp|location=Sequence derived from alignment at Scaffold_228:372775..377488- (Ectocarpus subulatus male Bft15b)
ATGTTTCAACGTCGAGAATGCGCGTAAAAAGTAAAAGCAGAAGGCGAGCG
GGATCTGCTTTTCGATTGTCAATCCTTATCCGTCGTCACGCCGTCTTACC
CGTGGGTCCGTCCTGCTACGTATTTGCTTCCTGCCTTGATACTCTGGCTG
AAGAGCTCCGATTCGGGGGTCAAGCTCTTCGTCTCCATCGAACATGCATT
TCTTTGCCTTCGCTTTCCATCGTCAGGATTACGCGCTCTCCCACCGTTTG
TCTCAACCGAAGCCTTTTTTCGCTCTCCCCTCCCGCTCACATTGAGCAGG
GGGTCCCACAAGGTTGCACGCTGTCCCCACCATTGTTCCAGGTGTTCATC
AACGATCTATTGGAAGTCGTAGAGGCAGTTCGAAAGGGAGTAAAAGTAGG
GGACACGGAAACTTCGGTTTCAGGAATACTGTTTGCGGATGATTTTGTCG
GTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATCGACGCGGCGAAG
AAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGT
CATGGTATGCAACGAGGACAAGGAGGACCCAGTAGAACATAGATGGAAGT
GGGAGATCGAGGAGATTGCAGTATTGGACCAGTACACATACCTGGGAGTA
GAGATCACAAAAGACTGCTCGTGGAATGCACACATGTCCAACGTAGCGGA
AAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGC
ACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCG
CCGCTAGAGTACGCAGGAGAAATATGTGAAGGAAATAAGAAGGTAGTGAA
AGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCT
CCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCC
CTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTG
CGGGATGGGAGAGGAGAGGTTGCCGAGAATTGCATGGGAGGCAAAGTGGG
CAAACAAAAAGAGGGGTAGACAACCCAAGGAATGGGTCATGGTTGTAGAG
GACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGAC
TAGGGAAGACATTTTTGAGCCACCTTTGGGAAGGTAGAAAGGAACGATTG
GCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACG
CGTGGTCAATGGTCTAACCGCTACGGCATGCGCCCCCCGCCCCCCGCCCC
CCTCCCGCTCTCTCCCCACCTCCGCCCCTCTCTGCTTTTGTCGTCGTTTC
TCTCCCGCGACTCTCGTCTCGGCACCCTCGTTCCGCCTAGGCCAAGGTAG
TCGAGACGGCCAAGGTGAGCGTAGCCAGTTTGTGCCGGAGCAAGAGGTTA
GGCAGTCCCGAGTGTTGATGTGGTAGATCCGCAGCAGAGTATGGTATGTA
GCAGCACGGCGAGGTGCGGCGAAGTGTGTGAGTTCGTTTCAACCCCCATC
ATCTGGGCAAGCGCTGGCATGTCTGTTTACCACGGTAGTGTGCGTTCTGA
TCGACGTTGTTTTTGGTGCTGGTGCTGCTGCCGCTCTTGTTGCCTGTGAT
CAGATTGCAGAGCGCGTACCCCATTATCTGGACAAGCGCTGGCATGCCTG
CACCGCATTAGTCAACGTTCTGGTTGGCGCTGTTTTGGTTGCTACTGCTG
CTGCTGCTGCTGCTGCTGCTGCCGCTGCTGTTGCCCTTGCTCAGATCGCC
GCTGGCATGTCTGTGTATCAAAATACTGTATGTTCTGGTCGGCGTTGTTG
TTGTTGGGCTGCTGGTGCTGCTGGTGCTGCTGCTGATGATGATTCTGCTG
ATTCCGCTGATTCTGCTGATTCTGCTACCGCTGCTGTTGCCCTTGCTCAG
ATCGCAGAGGGCCATTACGCGCTGACGATCGACGTCGGGGACATCGCCAA
GGAGTACACGGTACCGGGCCAGTACGTGCAGATCAAGGTGACCTCCAGCG
ATAAGCCGAGGTTCTTCGCGATCGCCTCTCCCCCGGATGCCAGGTACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGACTTTTGTCCGATCTGA
TCTGATCGAGAACGCCGCTCTCTTGTTGTGCTTGCTCCCCTCGGAAACCC
ACAACCTCGCCCCGCACTCGGGGAGCAATGGGTTGCACTCACTCGGACTC
GGTACTGCTGCAGCTTGCAGTGTTTTCCCCGTGCATGTTCGAGACTCCCT
TTGCTTCTTGTCTTGTTGTGAGCGTGCTGTCTACTTCACAGCACCCCCGC
TCGCTCGCTCGCTCGCTCGCGCTCTCTCTCTCTCCGTCCCTCTTCAGCTG
CATCATCACGTTTTTTTTTTTCTTGTCCATATTTTCTGATCGCCAGCATA
TCCCTTTCGGGATATATGTCTGCCGCAAGGTCAGTACAAGTGGGAGAAAA
ACGCTCCGAAAAACAAACTTTAGATCATCTCCAGCGCAGACCCCAAGTGG
CAGCGCGCCAAGAAGTCTACATGTAGACACAAGGTTGGTTGTGCACGATA
TTGCATTCCACTTCCAACTAAACGTTGCCGGATGTCATTGCTTCGCGCAT
TTCCTTCCACAAAACTGTGGAGGGCTCATGTTGGACTTCTCCACCGACTA
TTGCAACAGGCCCATCCACTCCCCACCGGAGGTGTGGAAACGCTGTTCAA
AGACAAATCAACCACGCCTTTCTGTTGAGACCAAAGCGTTCGCTCACTGT
ATGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCTG
CTTTTTCTTATGCTTCCCCTTGTGCTCATCCCCATCCGCATCCTTACCCG
TCTGATTGGGCGACGCATGTACTCCCCGCCCCTTCTTCTTCCTTTTTCCC
CCCTGCACTGAACCCTCATCCATATCCTTGTCCTTATCCTTGTCCTTCTC
GTGGGGCGACGGCGGTAGCAGCAGCGGCTCCCTGGAGTTCCTGATCAGGG
AGAACGACGCGACGGAGGCGCTGGTCGGGGTCAAGGCCGGGGGCTCCGTG
GAGGTTTCCCCCGTCATGGGCAAGGGGTTCCCCATCACGGAGAACTTCAC
CGGATACAAGTACGACTTCCCCGTACAGAACGTCGTGCTGTCGGCGTCGG
GCACCGGGTAAGTGAGTGCGTATTCTCTGCTACTATTTGCAGAGCGCTGT
TGAACCTGTCGTGTGGCGTGCTTACGTTACAGATATGCATAGCGCCTGTG
CTATGATCCTCTGCTTTTTGCGGAGGCTTGGGGTCCTTAGCTCCTCTCGT
GGGCTACAAATGGCGGCGACAGTAGGGGTTCTTGACCAGGCTCACAAATG
ATGGTCCACGTTCTTCTTACGTTTGATATAGCGCTGAATAACTGTCGATT
CACGTTTTTTTGGCTGTCGCAAGGCTGGCAGTGGAGCGGACGCAGCCCAA
ATTTTGGTGGTTGCGTGTATGACATGCGTGTACAAATGAAATAGCCTGTG
AAATGTGAATCCTCTAAGGGCACATGTGACACCACTGCGATGTTGCCAGG
TGAAGGGTGTGTGCCGGATACTCAAAAAAGAGTATTTTATCCAGGGTACA
AATTGCTACCCCGCGTGGAAGCTTTTACCAACCACCAAGATCGGCAGGTC
GAAAAGACACAGGCATTGCTGTGTCGTTGACAAAATATTTTTTTGCAACA
GATGCTTCGGTTTCGTTTGTTTTTTTTTCGGAGTCGACCGCTACTCCTCT
TTTGTGATGATTTTTTATGCTGCGAAAGGGTCGGGCATGAACCAAACCAG
GTAGAACCCCCCCCCTCCCTCCATTTCGGAGGTGTGTGGCAGAAGACAAT
GCAAAGAACGACCGTATGCATAGGCCCTCTCCCGCGGCAACAGCGCGAAT
CGACAGGAGGTTGTAGGATAAGGCAATGCCGGTGTCCTTTCCCGTTTCGT
GATACGGTGCCCCACGGATCGGTGTTCCCGATGCGAATCCCCCCCCGTTG
GCCTCGGGAAAAGAAAAGCGAATTTCCGTCTTGAGGTGGAACCGGCGTGT
GAAATAGATGGTACGAACTGCTGCCCGAATATCCTTGAGCTCATGGCGTT
GTGACTGCCAGAAGCGCGATGGAGCGCACCGTGAATAGCGCCCTCGCTGG
CGCACTGGACGGTTTCGTCCAACGGAATGAACGTGTTTGGTAGGAGTATA
CGACCTCGGAGCTTGTCCTCCCTGCTGGGTGCCGTGTGCTTCCCCTCGAT
GGTCGAGTCGGAGTGAGTCCTCCCTGCAGCTAACCTAGCTCATTTCTCCC
CGTATTGTTTTATTTCCGCCATTTTTTGTTTTGGGGGCCCGGGAAAACAA
CAGTATCGCTCCTTTCCGCGCGGCAATCGAGTCCGGGGCGCTGGAGCTGC
CGGATGCGGACGATGACGGGGTGTTCGGTCGGTCGTGCAAGCTGTACTGG
GGCTGCCGCGACGAGGAGAGCATACCGTGGAAGGACCGGGTGAAGGCGTG
GGACAAGCAGGGCGTCGAGGTGGTGATCGTCCTCTCTGAGCCAAGTGAGT
TGAGAGCGGNNNNN
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Coding sequence (CDS) from alignment at Scaffold_228:372775..377488-

>EsuBft144_26a-0001 ID=EsuBft144_26a-0001|Name=EsuBft144_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1536bp|location=Sequence derived from alignment at Scaffold_228:372775..377488- (Ectocarpus subulatus male Bft15b)
ATGTTTCAACGTCGAGAATGCGCGATTACGCGCTCTCCCACCGTTTGTCT
CAACCGAAGCCTTTTTTCGCTCTCCCCTCCCGCTCACATTGAGCAGGGGG
TCCCACAAGGTTGCACGCTGTCCCCACCATTGTTCCAGGTGTTCATCAAC
GATCTATTGGAAGTCGTAGAGGCAGTTCGAAAGGGAGTAAAAGTAGGGGA
CACGGAAACTTCGGTTTCAGGAATACTGTTTGCGGATGATTTTGTCGGTA
TGTCGGACACCCCTGAGGGACTGCAACTGCAAATCGACGCGGCGAAGAAG
TTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCAT
GGTATGCAACGAGGACAAGGAGGACCCAGTAGAACATAGATGGAAGTGGG
AGATCGAGGAGATTGCAGTATTGGACCAGTACACATACCTGGGAGTAGAG
ATCACAAAAGACTGCTCGTGGAATGCACACATGTCCAACGTAGCGGAAAA
GGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACC
TCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCG
CTAGAGTACGCAGGAGAAATATGTGAAGGAAATAAGAAGGTAGTGAAAGA
ACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCA
GGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTA
CGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGG
GATGGGAGAGGAGAGGTTGCCGAGAATTGCATGGGAGGCAAAGTGGGCAA
ACAAAAAGAGGGGTAGACAACCCAAGGAATGGGTCATGGTTGTAGAGGAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAG
GGAAGACATTTTTGAGCCACCTTTGGGAAGAGGGCCATTACGCGCTGACG
ATCGACGTCGGGGACATCGCCAAGGAGTACACGGTACCGGGCCAGTACGT
GCAGATCAAGGTGACCTCCAGCGATAAGCCGAGGTTCTTCGCGATCGCCT
CTCCCCCGGATGCCAGGGAGAACGACGCGACGGAGGCGCTGGTCGGGGTC
AAGGCCGGGGGCTCCGTGGAGGTTTCCCCCGTCATGGGCAAGGGGTTCCC
CATCACGGAGAACTTCACCGGATACAAGTACGACTTCCCCGTACAGAACG
TCGTGCTGTCGGCGTCGGGCACCGGTATCGCTCCTTTCCGCGCGGCAATC
GAGTCCGGGGCGCTGGAGCTGCCGGATGCGGACGATGACGGGGTGTTCGG
TCGGTCGTGCAAGCTGTACTGGGGCTGCCGCGACGAGGAGAGCATACCGT
GGAAGGACCGGGTGAAGGCGTGGGACAAGCAGGGCGTCGAGGTGGTGATC
GTCCTCTCTGAGCCAAGTGAGTTGAGAGCGGNNNNN
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