EsuBft967_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft967_2a-0001
Unique NameEsuBft967_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:368893..369354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft967_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft967_2aEsuBft967_2aEctocarpus subulatus male Bft15bgeneScaffold_228 368893..369354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_2a-0001-exonagat-exon-27615Ectocarpus subulatus male Bft15bexonScaffold_228 368893..369235 -
EsuBft967_2a-0001-exonEsuBft967_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 369291..369354 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_2a-0001-exonagat-three_prime_utr-23583Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 368893..369114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_2a-0001-cdsEsuBft967_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 369115..369235 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_2a-0001-exonagat-five_prime_utr-15342Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 369332..369354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_2a-0001EsuBft967_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 369115..369331 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft967_2a-0001 ID=EsuBft967_2a-0001|Name=EsuBft967_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=407bp|location=Sequence derived from alignment at Scaffold_228:368893..369354- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTAGACTAGTTCACGTGGTCTGATGTCCATCCGCGCCGTGTGTGGCGAG
AAACGGGCGGTGTCGCGTACCATGGCACTGACTGGGTGGATTTCGCCCCA
CAGCGGCTTGAACGATAGCTCTGGCCTGTACCTACTCATCGCGAGTTTAC
GTGCGATCAGGCGATGTCTGTGCAAGGAGTTATGACCGGAACGTCGCTGA
CACCCCCCCGGTAAGTTGCGGAGCCCCCTATTTTCGGCTCTTTCTCCGCA
ACCACTTGGCCGATTTGACCCAAAATGGTATGGGCTGATAGCTGCGGGCC
GTGGCTACACAGCGCATTTTGTTGTACGCTGATTGGAGCCCTGTGGGCCA
AGAAATGGTAGGTGTCGTTTATAAGGAAGTACGACACCGGTGTCGTATAT
AACACTA
back to top

protein sequence of EsuBft967_2a-0001

>EsuBft967_2 ID=EsuBft967_2|Name=EsuBft967_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MSIRAVCGEKRAVSRTMALTGWISPHSGLNDSSGLYLLIASLRAIRRCLC
KEL
back to top

mRNA from alignment at Scaffold_228:368893..369354-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft967_2a-0001 ID=EsuBft967_2a-0001|Name=EsuBft967_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=462bp|location=Sequence derived from alignment at Scaffold_228:368893..369354- (Ectocarpus subulatus male Bft15b)
TGTAGACTAGTTCACGTGGTCTGATGTCCATCCGCGCCGTGTGTGGCGAG
AAACGGGCGGTGTCGTATATAAGCTTATCTACGACACCGCCCTCGGGGAC
ACCGTCCAGCCGGGTGTAGGCGTACCATGGCACTGACTGGGTGGATTTCG
CCCCACAGCGGCTTGAACGATAGCTCTGGCCTGTACCTACTCATCGCGAG
TTTACGTGCGATCAGGCGATGTCTGTGCAAGGAGTTATGACCGGAACGTC
GCTGACACCCCCCCGGTAAGTTGCGGAGCCCCCTATTTTCGGCTCTTTCT
CCGCAACCACTTGGCCGATTTGACCCAAAATGGTATGGGCTGATAGCTGC
GGGCCGTGGCTACACAGCGCATTTTGTTGTACGCTGATTGGAGCCCTGTG
GGCCAAGAAATGGTAGGTGTCGTTTATAAGGAAGTACGACACCGGTGTCG
TATATAACACTA
back to top

Coding sequence (CDS) from alignment at Scaffold_228:368893..369354-

>EsuBft967_2a-0001 ID=EsuBft967_2a-0001|Name=EsuBft967_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_228:368893..369354- (Ectocarpus subulatus male Bft15b)
ATGTCCATCCGCGCCGTGTGTGGCGAGAAACGGGCGGTGTCGCGTACCAT
GGCACTGACTGGGTGGATTTCGCCCCACAGCGGCTTGAACGATAGCTCTG
GCCTGTACCTACTCATCGCGAGTTTACGTGCGATCAGGCGATGTCTGTGC
AAGGAGTTATGA
back to top