EsuBft967_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft967_7a-0001
Unique NameEsuBft967_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:289216..291229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G558
ProteomeIdEsuBft967_7
Protein domainsPTHR11469
Protein domainsSSF53697
Protein domainsIPR018189
Protein domainsG3DSA
Protein domainsIPR001672
Ownerapollo_admin@sb-roscoff.fr
Noteglucose-6-phosphate cytosolic os:arabidopsis thaliana gn:pgic pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length385
Hectar predicted targeting categoryother localisation
Evalue3.65e-81
EggNOG OGsCOG0166@1|root,KOG2446@2759|Eukaryota
Ec32 ortholog descriptionPhosphoglucose isomerase (PGI)
Ec32 orthologEc-13_003810.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
EC5.3.1.9
Descriptionglucose-6-phosphate isomerase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0004347
GO0009813
GO0009744
EC5.3.1.9
GO0010224
GO0046686
GO0005829
GO0006096
GO0006094
GO0009817
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft967_7aEsuBft967_7aEctocarpus subulatus male Bft15bgeneScaffold_228 289216..291229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_7a-0001EsuBft967_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 289216..291207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_7a-0001-exonagat-exon-27642Ectocarpus subulatus male Bft15bexonScaffold_228 289216..289224 -
EsuBft967_7a-0001-exonEsuBft967_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 289272..289438 -
EsuBft967_7a-0001-exonagat-exon-27641Ectocarpus subulatus male Bft15bexonScaffold_228 289748..289865 -
EsuBft967_7a-0001-exonagat-exon-27643Ectocarpus subulatus male Bft15bexonScaffold_228 291139..291229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_7a-0001-cdsEsuBft967_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 289216..289224 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_7a-0001-exonagat-five_prime_utr-15346Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 291208..291229 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft967_7a-0001 ID=EsuBft967_7a-0001|Name=EsuBft967_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=385bp|location=Sequence derived from alignment at Scaffold_228:289216..291229- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGAGGACCCCAAGGTTGCGATGAAGCACCTGGCGGCGTGCGCTAGCG
AGTCGGCCACGGAGAGGGTCACCGCTTTCGGGATACCCAAGGACCGGCTG
TTCCCGCTGTGGGACTGGGTTGGTGGCCGGTACTCAGTCTGTTCGAGCGT
AGGGGCGCTTCCCTTGAGCCTCAAGTACGGCTTCCAGCAGTTCGACAGCT
TCCTGGCAGGCGCCCGCAGCATGGACAGGCATTTCTTGCACGCGCCTTTG
GAGAAGAACATGCCGGTGCTTATGGGGCTTCTCGGAGTCTGGAACATCTC
GTTCATGGGGTACAAAACTAGAACCATTTTGCCCTATGCGGAGGCCCTCC
TCAAGTTCCCGGCGCACATTCAGCAGCTTCGATAA
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protein sequence of EsuBft967_7a-0001

>EsuBft967_7 ID=EsuBft967_7|Name=EsuBft967_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MKHLAACASESATERVTAFGIPKDRLFPLWDWVGGRYSVCSSVGALPLSL
KYGFQQFDSFLAGARSMDRHFLHAPLEKNMPVLMGLLGVWNISFMGYKTR
TILPYAEALLKFPAHIQQLR
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mRNA from alignment at Scaffold_228:289216..291229-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft967_7a-0001 ID=EsuBft967_7a-0001|Name=EsuBft967_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2014bp|location=Sequence derived from alignment at Scaffold_228:289216..291229- (Ectocarpus subulatus male Bft15b)
GGGGGAGGACCCCAAGGTTGCGATGAAGCACCTGGCGGCGTGCGCTAGCG
AGTCGGCCACGGAGAGGGTCACCGCTTTCGGGATACCCAAGGTCTGACGA
TTGTTGTTGTCATCGTTGTTGCTGTTGTTGTTGTTGTTATTATTGTTGTT
GCTACTCTGTGTTGTTCTCGCGTGGTACCCTTTGACCATATTTCTGTTGT
ACTCTGTGCCTGGCGCTTCTCAACCGCGAGAGTGTTACATCGTGTATGAA
ACAAGATAACAATCCCCATTGACCGATTTCCGAAGCTGGATTTGTCGACA
GCAGGAAGTGTCACAGCGCCGAGAACGGCGGCGTTGGAACCACCTGGTCG
AGAGCTTGTTTATAATGTATCGCTTCGTTGACGCATCCTCTTCGTCGTGG
AGTAATCGAGCTTTGAAAATTGGTCCAGGGGGTGTGTTATCTCGTGTCAT
ATACGTTGTTCGAGCTCTGAAAGTCGGTCGAGGGGGTGTGTTATCTTAGG
TCATATTCGTTATTCGAGCTCTGAAAGTCGGTCCAGGGGTTGTGTTATCT
TGTGTCATACACGTTATTCGAGCTCTGAAAATCGGTTCAGGGGGTGTGTT
ATCTTGCGTCATATACGTTATTAGAGCTCTGAAAGTCGGTCCAGGGGGTG
TGATATCTTGTGTCATATACGTTATTCGAGCTCTGAAAATCGGTCCAGGG
GGTGTGTTATCTTGTGTCATATACGTTATTCGAGCTTTGAAAATCGGTCC
AGGGGGTGTGTTATCTTGTGTCATATACGTTATTCGAGCTTTGAAAATCG
GTCCAGGGTGCGTGCCATTTTTTGTCATATACGTTAACTTCAACGCGTTT
ATTGCTTCATGTACAGGACTCGATATTGCTTTTTTGGTGTGCCATTTTTT
TTTTTATTACGGGACTGGCTGTTCCCACGTCGGGGTTAATGTAGTTCTTT
ATGTGGATACATAACTTTGGACTATTTCGTCCTTTGCTTCAGTCTGGTTG
TTATCTCTCTCATTCATCGATTTATTTTTCACCAGGCACTTTCTCCTTGT
TGTCCTTCAACGCTTTGAAGACCTTACTTACTCACTGGCAGGACCCGTTT
TTTTTGTTCCTGACATTTGCAGAGGATTCTCTTTTTTTTCGTTTCGCAGG
ACCGATTGATTGTGTTGCTGATGTTTCTGTCGTTGGCGTTGTCGTCCAAT
CTGTTGCCTTCGGGATGCCCAAATTCTGAGCCTTTTTGTTAGTTGTTATG
CTGTTGTTGTTGGTGTCGTTGTTGTCAATCGTATTTCTTTCATGTGCAGG
ACCCGGCTTTTTTTTTTGTAAATGGCAATGATTCTTAATCTCTTTTCGTT
CTTACTTTTCGCAGGACCGGCTGTTCCCGCTGTGGGACTGGGTTGGTGGC
CGGTACTCAGTCTGTTCGAGCGTAGGGGCGCTTCCCTTGAGCCTCAAGTA
CGGCTTCCAGCAGTTCGACAGCTTCCTGGCAGGTGGGTTGATTGCTCTTG
TTCGGAAGCTTTCTTGTTTTAGTACGGCTTCCAGCTGTTCGACAGCTTCG
TGGCACGTGGGTTGATTGCTCGTTTTTGGATGCTTCCTTGTTTTGGTACG
GCTTCCAGCTGTTCGACAGCTTCCTGGCAGGTGGGTTGATTGCCCGTGGT
TGGAAGCTTCCTCGTTTTAGTACGGCCTTCAGCAGTTCGGTGGCTCTTTG
ACAAAATGTGGGTAAGTCGTCGTTGTTGATTGTGTAAATATTTCCATGTT
CTCCTCGTGCGGGATTGTTTTGTTTTGTTTGTTTGTTACAGGCGCCCGCA
GCATGGACAGGCATTTCTTGCACGCGCCTTTGGAGAAGAACATGCCGGTG
CTTATGGGGCTTCTCGGAGTCTGGAACATCTCGTTCATGGGGTACAAAAC
TAGAACCATTTTGCCCTATGCGGAGGCCCTCCTCAAGTTCCCGGCGCACA
TTCAGCAGGTGCGGTACTGCTGTAGCGCTGGAATACTTGATCAGAAATTG
CTCAGCTTCGATAA
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Coding sequence (CDS) from alignment at Scaffold_228:289216..291229-

>EsuBft967_7a-0001 ID=EsuBft967_7a-0001|Name=EsuBft967_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_228:289216..291229- (Ectocarpus subulatus male Bft15b)
ATGAAGCACCTGGCGGCGTGCGCTAGCGAGTCGGCCACGGAGAGGGTCAC
CGCTTTCGGGATACCCAAGGACCGGCTGTTCCCGCTGTGGGACTGGGTTG
GTGGCCGGTACTCAGTCTGTTCGAGCGTAGGGGCGCTTCCCTTGAGCCTC
AAGTACGGCTTCCAGCAGTTCGACAGCTTCCTGGCAGGCGCCCGCAGCAT
GGACAGGCATTTCTTGCACGCGCCTTTGGAGAAGAACATGCCGGTGCTTA
TGGGGCTTCTCGGAGTCTGGAACATCTCGTTCATGGGGTACAAAACTAGA
ACCATTTTGCCCTATGCGGAGGCCCTCCTCAAGTTCCCGGCGCACATTCA
GCAGCTTCGATAA
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