EsuBft967_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft967_9a-0001
Unique Name	EsuBft967_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:272897..273958 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft967_9
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	106
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft967_9a	EsuBft967_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 272897..273958 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_9a-0001-exon	EsuBft967_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 272897..273958 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_9a-0001-cds	EsuBft967_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 272897..273649 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_9a-0001-exon	agat-three_prime_utr-23590	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 273650..273958 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_9a-0001	EsuBft967_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 272897..273649 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:272897..273958+
coding sequence from alignment at Scaffold_228:272897..273958+

spliced messenger RNA

>EsuBft967_9a-0001 ID=EsuBft967_9a-0001|Name=EsuBft967_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1062bp|location=Sequence derived from alignment at Scaffold_228:272897..273958+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATTGTGTTCACCGTCGACAATTTGCTGGACAACATCGCCACAGC
AGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCTCTCTGG
AGGATGTTGTAGAAGCACCCCATCTGTCGTCCGATTCCCCCCTTTTCGTT
CCTCCTTTCTCGCTCCCGCCGGAAGACAAATTAATCCTCTTGCCCCACGA
CGAGTTTATGGCGTACCAAAGGTTGGACGAGATGTGGTGCGACGGTCTTG
CCGGGAAGATAGCAGAGGCGGAGGCGCGAAAGCAGGAGGAGCGCGAGGAC
GCGGAGCGCCTGGCAGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAA
GCAGGAGGAGGAGCGTGAGGCTGTTGAGGCTGCTGCGGCGAGGAAGCAGA
AGGAGGAACGTGAGGCTGCTCTGGCTGCTTCGCCGAGGAAGCAGGAGGAG
AAGAGTGAAGCTGTTCTGGCGGAGCGTGGGGCGTATCTCCAAGCGACTAG
GGCGAAGCAGGGGCGCTCCGATCGCGGCTGTGGGACCTGGAGCCCCGCCA
CCAGGACCCGCGAGCAGCCCCCCACCCCCGTCGCCGTGTCATCGTCCCCC
CCCCACGCCCTTCCAGGTGCCCCTTGGTTCCCATCGTACCGCCTCGCCGC
ACGAGGAGCGGGAGGTGGCGGCTTCTCCGACGAACGAGAAGGAGCGGGAG
AGGACAGCGACTCCGCAGTTTTCGGTGACGTTGGGTCTTCCGGCCGGTGC
TGAAGACGGAGCATCGTTTGAGGCGGCAACCACGGTGTACGAGTTCCACG
TTGGAGATACATCGTTCCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGAT
GCAGCGTTCCACGATGAGAACAAATTGGCAGCTCTTTTTGCATGGGCTGG
CATCAAACAACTTGTCCGTGCACAATTCCCCCCGCCGCACACCGTTGCTT
TCGGGCACAACTATCACATTCTATAAATCGCGGAACTTCCGCCTACTTCG
CGGCAGTCCGTGTTCCAGCTTTTGTTCGCTCTCCGTCGTGCCACCTTTCA
TTAAGGTCCTCA

protein sequence of EsuBft967_9a-0001

>EsuBft967_9 ID=EsuBft967_9|Name=EsuBft967_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MPIVFTVDNLLDNIATADPAELERAYNTGRVSLEDVVEAPHLSSDSPLFV
PPFSLPPEDKLILLPHDEFMAYQRLDEMWCDGLAGKIAEAEARKQEERED
AERLAEREAALAAAARKQEEEREAVEAAAARKQKEEREAALAASPRKQEE
KSEAVLAERGAYLQATRAKQGRSDRGCGTWSPATRTREQPPTPVAVSSSP
PHALPGAPWFPSYRLAARGAGGGGFSDEREGAGEDSDSAVFGDVGSSGRC

mRNA from alignment at Scaffold_228:272897..273958+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft967_9a-0001 ID=EsuBft967_9a-0001|Name=EsuBft967_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1062bp|location=Sequence derived from alignment at Scaffold_228:272897..273958+ (Ectocarpus subulatus male Bft15b)
ATGCCCATTGTGTTCACCGTCGACAATTTGCTGGACAACATCGCCACAGC
AGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCTCTCTGG
AGGATGTTGTAGAAGCACCCCATCTGTCGTCCGATTCCCCCCTTTTCGTT
CCTCCTTTCTCGCTCCCGCCGGAAGACAAATTAATCCTCTTGCCCCACGA
CGAGTTTATGGCGTACCAAAGGTTGGACGAGATGTGGTGCGACGGTCTTG
CCGGGAAGATAGCAGAGGCGGAGGCGCGAAAGCAGGAGGAGCGCGAGGAC
GCGGAGCGCCTGGCAGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAA
GCAGGAGGAGGAGCGTGAGGCTGTTGAGGCTGCTGCGGCGAGGAAGCAGA
AGGAGGAACGTGAGGCTGCTCTGGCTGCTTCGCCGAGGAAGCAGGAGGAG
AAGAGTGAAGCTGTTCTGGCGGAGCGTGGGGCGTATCTCCAAGCGACTAG
GGCGAAGCAGGGGCGCTCCGATCGCGGCTGTGGGACCTGGAGCCCCGCCA
CCAGGACCCGCGAGCAGCCCCCCACCCCCGTCGCCGTGTCATCGTCCCCC
CCCCACGCCCTTCCAGGTGCCCCTTGGTTCCCATCGTACCGCCTCGCCGC
ACGAGGAGCGGGAGGTGGCGGCTTCTCCGACGAACGAGAAGGAGCGGGAG
AGGACAGCGACTCCGCAGTTTTCGGTGACGTTGGGTCTTCCGGCCGGTGC
TGAAGACGGAGCATCGTTTGAGGCGGCAACCACGGTGTACGAGTTCCACG
TTGGAGATACATCGTTCCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGAT
GCAGCGTTCCACGATGAGAACAAATTGGCAGCTCTTTTTGCATGGGCTGG
CATCAAACAACTTGTCCGTGCACAATTCCCCCCGCCGCACACCGTTGCTT
TCGGGCACAACTATCACATTCTATAAATCGCGGAACTTCCGCCTACTTCG
CGGCAGTCCGTGTTCCAGCTTTTGTTCGCTCTCCGTCGTGCCACCTTTCA
TTAAGGTCCTCA

Coding sequence (CDS) from alignment at Scaffold_228:272897..273958+

>EsuBft967_9a-0001 ID=EsuBft967_9a-0001|Name=EsuBft967_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_228:272897..273958+ (Ectocarpus subulatus male Bft15b)
ATGCCCATTGTGTTCACCGTCGACAATTTGCTGGACAACATCGCCACAGC
AGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCTCTCTGG
AGGATGTTGTAGAAGCACCCCATCTGTCGTCCGATTCCCCCCTTTTCGTT
CCTCCTTTCTCGCTCCCGCCGGAAGACAAATTAATCCTCTTGCCCCACGA
CGAGTTTATGGCGTACCAAAGGTTGGACGAGATGTGGTGCGACGGTCTTG
CCGGGAAGATAGCAGAGGCGGAGGCGCGAAAGCAGGAGGAGCGCGAGGAC
GCGGAGCGCCTGGCAGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAA
GCAGGAGGAGGAGCGTGAGGCTGTTGAGGCTGCTGCGGCGAGGAAGCAGA
AGGAGGAACGTGAGGCTGCTCTGGCTGCTTCGCCGAGGAAGCAGGAGGAG
AAGAGTGAAGCTGTTCTGGCGGAGCGTGGGGCGTATCTCCAAGCGACTAG
GGCGAAGCAGGGGCGCTCCGATCGCGGCTGTGGGACCTGGAGCCCCGCCA
CCAGGACCCGCGAGCAGCCCCCCACCCCCGTCGCCGTGTCATCGTCCCCC
CCCCACGCCCTTCCAGGTGCCCCTTGGTTCCCATCGTACCGCCTCGCCGC
ACGAGGAGCGGGAGGTGGCGGCTTCTCCGACGAACGAGAAGGAGCGGGAG
AGGACAGCGACTCCGCAGTTTTCGGTGACGTTGGGTCTTCCGGCCGGTGC
TGA