EsuBft1445_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1445_5a-0001
Unique NameEsuBft1445_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:238414..238757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1445_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length28
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_5aEsuBft1445_5aEctocarpus subulatus male Bft15bgeneScaffold_228 238414..238757 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_5a-0001-exonagat-exon-90201Ectocarpus subulatus male Bft15bexonScaffold_228 238414..238468 +
EsuBft1445_5a-0001-exonEsuBft1445_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 238525..238757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_5a-0001-cdsEsuBft1445_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 238414..238468 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_5a-0001-exonagat-three_prime_utr-3927Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 238545..238757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_5a-0001EsuBft1445_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 238414..238544 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1445_5a-0001 ID=EsuBft1445_5a-0001|Name=EsuBft1445_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=288bp|location=Sequence derived from alignment at Scaffold_228:238414..238757+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGACAGTCCCCCCATTTTTCGTGGTGAGACGTGTACTACACTT
CCAGCGGTCACATGGGAGGGGGTAAACACCAGGGCTTTTTTCTTCTCTTT
ATTTCTTTTCGTGCCCCACCTTCCTCCTGCGGTGCGTGCTGAATTTTATT
TTTATCGCGAGAAGGGTCCAGTCGTCCCTTTCCCTCGTCAACGGTGCTAA
CGTCGAAGTTTGGTACTCACGAGAGCTTGTCAGCTATATTTCGCTTTCAC
CCGCACATTTCGTAAATTTTTCACCCCATGGGTATTCG
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protein sequence of EsuBft1445_5a-0001

>EsuBft1445_5 ID=EsuBft1445_5|Name=EsuBft1445_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=24bp
MMATVPPFFVVRRVLHFQRSHGRG
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mRNA from alignment at Scaffold_228:238414..238757+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1445_5a-0001 ID=EsuBft1445_5a-0001|Name=EsuBft1445_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=344bp|location=Sequence derived from alignment at Scaffold_228:238414..238757+ (Ectocarpus subulatus male Bft15b)
ATGATGGCGACAGTCCCCCCATTTTTCGTGGTGAGACGTGTACTACACTT
CCAGCGTATGTAGAGTACGACACTTTTGAGTGTATTTTTTCGTACAACTA
GAAGCATCCAGGGTCACATGGGAGGGGGTAAACACCAGGGCTTTTTTCTT
CTCTTTATTTCTTTTCGTGCCCCACCTTCCTCCTGCGGTGCGTGCTGAAT
TTTATTTTTATCGCGAGAAGGGTCCAGTCGTCCCTTTCCCTCGTCAACGG
TGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTGTCAGCTATATTTCGC
TTTCACCCGCACATTTCGTAAATTTTTCACCCCATGGGTATTCG
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Coding sequence (CDS) from alignment at Scaffold_228:238414..238757+

>EsuBft1445_5a-0001 ID=EsuBft1445_5a-0001|Name=EsuBft1445_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=75bp|location=Sequence derived from alignment at Scaffold_228:238414..238757+ (Ectocarpus subulatus male Bft15b)
ATGATGGCGACAGTCCCCCCATTTTTCGTGGTGAGACGTGTACTACACTT
CCAGCGGTCACATGGGAGGGGGTAA
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