Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1445_2 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 82 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1445_2a-0001 ID=EsuBft1445_2a-0001|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=823bp|location=Sequence derived from alignment at Scaffold_228:199956..201081+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTGTTGCTATTTTGTTTGAGTCATCTAGCTGCTGACACGATGACTGTTG
GATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACCACGAT
ATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCT
TTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGTGTAGCTGAGA
TGTGTGTCTACGTGAAAGAAAATGTGAGAGTCGTATTGGCATTCGCATCA
AGCGCATTGCGCATTTTTCGAATTTTGGCCTCCTTCCAGGGACCTTGATT
TTTACCCGCTGGCACTGACGTCTTTTAATTGGTCAGCCGGTTAGCGCGGT
CGATGCTAATAATAAAAACACACACACACATGGTGTCCTCCGCTCTTTGC
ATCAGTGGCTTCCTAGATTCGAGCGAGGGCATGTGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAAAAATAAAGGAGGACGCTTCCCACACCCGCCCAAACA
AAAAATCAAAGGGTAACGGTAACGTACCAGCACCAGGCACTACGCACCAG
GGCATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGCAGA
CAGACAGTCAGACGTACAAAAACAAAGGCAACAGCAGAGCGAGATCATGT
TACCCAACACAGCAGAGTAGGCAGGGAGGTCATGAAAAAAGGAAACACAG
AAACACAGCACAGAGGCCGAAGG back to topprotein sequence of EsuBft1445_2a-0001 >EsuBft1445_2 ID=EsuBft1445_2|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MTVGSWECTIIKLGDAAYHDILASAGLEITLLLSSALCISGFLGSGEGMC
VAEMCVYVKENVRVVLAFASSALRIFRILASFQGP back to topmRNA from alignment at Scaffold_228:199956..201081+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1445_2a-0001 ID=EsuBft1445_2a-0001|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1126bp|location=Sequence derived from alignment at Scaffold_228:199956..201081+ (Ectocarpus subulatus male Bft15b)
TGTGTTGCTATTTTGTTTGAGTCATCTAGCTGCTGACACGATGACTGTTG
GATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACCACGAT
ATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCT
TTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGTGTAGCTGAGA
TGTGTGTCTACGTGAAAGAAAATGTGAGAGTCGTATTGGCATTCGCATCA
AGCGCATTGCGCATTTTTCGAATTTTGGCCTCCTTCCAGGGACCTTGATT
TTTACCCGCTGGCACTGACGTCTTTTAATTGGTCAGCCGGTTAGCGCGGT
CGATGCTAATAATAAAAACACACACACACATGGTGTCCTCCGCTCTTTGC
ATCAGTGGCTTCCTAGATTCGAGCGAGGGCATGTGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAAAAATAAAGGAGGACGCTTCCCACACCCGCCCAAACA
AAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACGCACCAGGGCATG
GGAGTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGCAGACAGACA
GTCAGACGTACAAAAACAAAGGCAACAGCAGAGCGAGATCATGTTACCCA
ACACAGCAGAGTAGGCAGGGAGGTCATGAAANATTTTTTTTGCGAAAAAA
AAACTCCGCTATCGCTCCGTTTTTATTTTCGCACGCGCGCTTCGCGCGCG
GAAAAAACTCCTAACAAAAACAAAAATAAAGGAGGACGCTTCCCACACCC
GCCCAAACAAAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACGCAC
CAGGGCATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGC
AGACAGACAGTCAGACGTACAAAAACAAAGGCAACAGCAGAGCGAGATCA
TGTTACCCAACACAGCAGAGTAGGCAGGGAGGTCATGAAAAAAGGAAACA
CAGAAACACAGCACAGAGGCCGAAGG back to topCoding sequence (CDS) from alignment at Scaffold_228:199956..201081+ >EsuBft1445_2a-0001 ID=EsuBft1445_2a-0001|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_228:199956..201081+ (Ectocarpus subulatus male Bft15b)
ATGACTGTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGC
ATACCACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGT
CCTCCGCTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGT
GTAGCTGAGATGTGTGTCTACGTGAAAGAAAATGTGAGAGTCGTATTGGC
ATTCGCATCAAGCGCATTGCGCATTTTTCGAATTTTGGCCTCCTTCCAGG
GACCTTGA back to top
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