Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1515_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 34 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1515_3a-0001 ID=EsuBft1515_3a-0001|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=345bp|location=Sequence derived from alignment at Scaffold_228:164505..167051+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCGAACTCACCAACGTTGGTCCTACAGCAGTAGTGTACCTGGTGAATACG
GTCACGGATAGCCGGATGGCTCATCTAGGCCGAACGTAATACCAACTAAG
GAGGCTAGCGCACGGTGGAGCAGCGCTGGGGGTCCGCCTTTTCCTGCGGC
GTTCACGGGAACAAATTGAGGAGGGAGATGAGACCACAATTCGGGCGGAT
ATTGGATTCTCTTTTGACGAAGCTGGCGGGGAAGAGCCCGCCGGGGGAGA
TGGGGGGCACGATGAACAAACACCCGGAGATGGCGGCCGAGAGACCACAC
CGGATGGCGAGGAGGAAACTCGCACTCAGGAGAGGGGGGGGGTGA back to topprotein sequence of EsuBft1515_3a-0001 >EsuBft1515_3 ID=EsuBft1515_3|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MRPQFGRILDSLLTKLAGKSPPGEMGGTMNKHPEMAAERPHRMARRKLAL
RRGGG back to topmRNA from alignment at Scaffold_228:164505..167051+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1515_3a-0001 ID=EsuBft1515_3a-0001|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2547bp|location=Sequence derived from alignment at Scaffold_228:164505..167051+ (Ectocarpus subulatus male Bft15b)
TCGAACTCACCAACGTTGGTCCTACAGCAGTAGTGTACCTGGTGAATACG
GTCACGGATAGCCGGATGGCTCATCTAGGCCGAACGTAATACCAACTAAG
GAGGCTAGCGCACGGTGGAGCAGGTGTGTGAGTACCCATTGACAGTGCTT
TGGGGTGAAAGTGTCTACGGTTTCACTATAATCTGGCCATCTAAAGTGTG
GCCTTCAAAGGACACGTCATGGTTGAACTTGGCCGGTGCGCTGCACGAAG
ACACTCTGCCTCTGAGATCAAGCTGCTCGCCTGTGCCCCTCTCTGCGAAG
GGGGGAGTCTTCGTGGTCGAAGCCAACGCTTGGCTACCGGAGCTATTGCT
GCTGTAGCGATGCAAGGTAGGCAGAGCAGTTTGGAGCGTGTGTGTCGGCG
CCAACATGCTTCTATGCGGTGTTCTGTGTGTACCAGTTGGTGACACCAGA
TTCCGCACCCCCTGCACCGATGTTCAAAGCTCGAGTACTCCACCACGAAA
AGGATGGAACATTGTACATAAAACCAGTGATACATCTTCAGAAAGCTCTC
GGCGAGCCGTTTCAGCGCCGCCATTTTCGGCGCCATCATGTTTTGCTTTA
GGAATATTCGGGTTTCGAAATTTAGTCCAGGGGGTGTGATATCTTGTGCA
ATCAATAGCACACATTGTATACGATGTACGCGACCACAAGAAGAGTTGTT
AGCGCCCCCTGCCTGCGGACGGAATGGGTTTTCGCACTCAAGAACGAAGT
GGATCTGGTGTAGAAGGGTCGGCCTATGTTGCAGTTTGGTTTTGCAACAG
CACTGTACAAGACCGCGCGTCTGTTTTTTTCTTTTTTTTTAATTTGAGAC
ACTCCACGTTGACCCCTTGGGTGCACGGAGTTCGCATGTTCACCGCCCAC
TCACAGCAATAATGGCAGAGTAGGTCTTGCCCTNGTCTTCAGAAAGCTCT
CGGCGAGCCGTTTCCAGCGCCGCCATTTTCGGCGCCATCATGTTGTTTTG
CTTAAGGAATATTCGGGTTTCGAAATTTGGTCCAGGGGGTGTGATATCTT
GTGCAATCAATGGCACACATTGTATACGATGTACGCGACCACAAGAAGAG
TTGTTAGCGCCCCCTGCCTGCGGACGGAATGGGTTTTCGCACTCAAGAAC
GAAGTGGATCTGGTGTAGAAGGGTCGGCCTATGTTGCAGTTTGGTTTTGC
AACAGCACTGTACAAGGCCGCGCGTCTGTTTTTTTCTTTTTTTTTGAGTT
TGAGACACTCCACGTTGACCCCTTGGGTGCACGGAGTTTGCATGTTCACC
GCCCACTCACAGCAATAATGGCAGAGTAGGTCTTGCCCTTGCTTGCTCAA
GTCTAGTACGGCAGTTGACAACGGAAAAAAATGAAACACGGTAGGTGCAA
TGCGTTGTGTATCCAGCAGACGGAAAGGTGTGGGTGTGCATTAGACACCA
AACTTCCCCTTCCCAGTTGTTTGTTCGGCATTGAACCACATGCTCCACCG
TTCACGCCAACCTGCGCGATGTCCTAACCTAGCCATTAAAATTTGTATCT
TAATGTTGGTGTTGTGCAGCATCCCGGTACGTGGTACAGTAGAGGTCCCT
ATTTAGTGCCGGGATGTGCGCCGAAATTTCACCGGCCTTAACTGGACACC
GGCACTATTTTATTATTTATTTATTTATTTTTGCCTTCCGACAATTGCAG
ATGTACCTCAGAAAACTTTCACTTAATGTCTCATACTCTACATGAATATT
CTAAGTACAGAACGACTTGGTTTTCCAGTGTGTGAGCCGAAAACACCGGG
CACTGTAACGGCAACCGTCACTTTTCAACCGGCACTAAACCGGGACCCCT
ACTGTATTGGTGGGTGTGATACGAGTTTGTTGCTGTAGCTGCAGTGAATC
CCCACCCCCTCACCCTTGTCAAGGAGCTCGCATCGATTGGCCCTGGTCGN
AGCCGAAAACACCGGGCACTGTAACGGCAACCGTCACTTTTCAACCGTCA
CTAAACCGGGACCCCTACTGTATTGGTGGGTGTGATAGGAGTTTGTTGCT
GTAGCTGCAGTGAATCCCCACCCCCTCACCCTTGTCAAGGAGCTCGCATC
GATTGGCCCTGGTCGGAAGGCACGCCACCAGCACCACCGGGGTGGTCGTT
CTGTGTGAATTATTGTTACCCGGCGGAGCCGACAGACTACGTGCGCATCC
GCGTTGCAACATCCTCCCATGGTCACAGTAGGCGATGTCAAAAATACGCA
AGCATTTTTCGATACTTTTTCATCGACGACACCCCGTCCTCGTCTGAAAC
TTCGTATGGTTCACGGACCGAGCAGCGCTGGGGGTCCGCCTTTTCCTGCG
GCGTTCACGGGAACAAATTGAGGAGGGAGATGAGACCACAATTCGGGCGG
ATATTGGATTCTCTTTTGACGAAGCTGGCGGGGAAGAGCCCGCCGGGGGA
GATGGGGGGCACGATGAACAAACACCCGGAGATGGCGGCCGAGAGACCAC
ACCGGATGGCGAGGAGGAAACTCGCACTCAGGAGAGGGGGGGGGTGA back to topCoding sequence (CDS) from alignment at Scaffold_228:164505..167051+ >EsuBft1515_3a-0001 ID=EsuBft1515_3a-0001|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_228:164505..167051+ (Ectocarpus subulatus male Bft15b)
ATGAGACCACAATTCGGGCGGATATTGGATTCTCTTTTGACGAAGCTGGC
GGGGAAGAGCCCGCCGGGGGAGATGGGGGGCACGATGAACAAACACCCGG
AGATGGCGGCCGAGAGACCACACCGGATGGCGAGGAGGAAACTCGCACTC
AGGAGAGGGGGGGGGTGA back to top
|