Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1515_2 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 142 |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_003290.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1515_2a-0001 ID=EsuBft1515_2a-0001|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1426bp|location=Sequence derived from alignment at Scaffold_228:136668..139432+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTGGCAAGACTTGTTTCCTCCACGGACTCCTACGTTTTGTGAACTCGGG
GCTGCGGCGATGATCAGGAAGAGCAAGACCCGTGAGGCCCGCAAGCGACC
TCCCGCGCTACGAAGGTCCCACCTCCTGGTGGCGACCGTGATGTCAGCCA
CGACCGTGAAGATCGTGGAAAGCAACAGGCTGGTTGAGTTTCCGTCGGTT
TTCAGATGCATGTGGAACGACCTGCCGCACCCGGCTCAGTTCGCGATCAT
ATTTCTGATGCTTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGTAAGC
TTGACGACGCCGCGTACGCTCGACTATCTCGTGCCGTAACTGCTTGGATA
AATGAGAGGCGGCATGCACATCAGGGTTAGTCCAAGCACGAGCGATGGTA
TCGGGGGTTGAACACTACAGCGAGCGCTACTTTGAGACTTCAAGAGAGTT
AGAATTCGATAGATACCAATCTGTCTTTGCTGCGGCGGTGAGGCAGTTTT
CAGGGTATGGTTTCCATGGGTTCGATTCGGTACTGTAGGACTCTTCCGTA
CTGATTGCTGCGAGTGTGCGCGGTACATCGGATGCGGCACTTTGCATAGC
AAGAGAGGTTGCATGGGGAGGCGGTCAATACATGTACATACACTTAAGAA
GGTCAGTCACCGGTCTTTCTTTTGTGTTTGGGTTTTTCCAGCATGCCCCC
CTGTAGTAGTCATGAGCTGTGCACCATAGCCTCTTCAAGAGTTCCAGTGC
AAGCTTGACGGGGCTCAAAGACAGCAGGAAACGGTCCCCAAGGTGAATGT
ATTATGTTTTTGCGTTCCATTTGAACGAAGGTGGCGTCTTTCCAGGGCAA
AATTGGCAAGGTCATAGCTAGGATAGCCGCGCGGGTTTTACGGGTGTTTG
GTGCCGTAAATAATGTTCTCCTCCTTACGTTTCGGCTTCGGTGGGGCAGA
CTCGCAACATCGTTTGCTGCTACCCGCTGGTTTCTTGAATTTCACGGGGT
TGGGTTCGGTGAGGGATATGAAACCATGTGTATCATGCGCTACAAGTAAC
GTATTGAATCCGCTTCACGCGTGATTCTCTTGCCCGGCGTTAAATTCCAC
ACCCTTTTCGGTCTAATCGACGGGGGGTGGTGAGAGAGTAGCACGCTCGC
ATTCCACGTTCTTCGCTTCCAGTGAAGGTGGCAATGGCGCTCCGCGCTGC
TTGTCTACCCGGGGCGGGCAAGGGGAAGCGAATGTCACTTACATGCACAA
AGTATGTGCTACTGTAGTATTGGATCACCATCCGAACTCAGGGCTGTGCG
ATTGCCTCGCTTTCAACAAAGGTGGGAACGGTCCTCCGTTCCGCATATCT
CACCGGGGCGGGAAAGGGGAAGGTTAGAATAAGAATGCCACCATATAGTG
TGCTGACGGATCACTATCCGGACACA back to topprotein sequence of EsuBft1515_2a-0001 >EsuBft1515_2 ID=EsuBft1515_2|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MIRKSKTREARKRPPALRRSHLLVATVMSATTVKIVESNRLVEFPSVFRC
MWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINER
RHAHQG back to topmRNA from alignment at Scaffold_228:136668..139432+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1515_2a-0001 ID=EsuBft1515_2a-0001|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2765bp|location=Sequence derived from alignment at Scaffold_228:136668..139432+ (Ectocarpus subulatus male Bft15b)
GTTGGCAAGACTTGTTTCCTCCACGGACTCCTACGTTTTGTGAACTCGGG
GCTGCGGCGATGATCAGGAAGAGCAAGACCCGTGAGGCCCGCAAGCGACC
TCCCGCGCTACGAAGGTATAAATGACCAAACGTGATGCGAAATACTGGAG
CAACCCACCAACGACTGGCGACCCATCCGCGAACCACCTTATTCATGTGA
TACCTGCGGCATTCGGAATCTTTGGACCCTTGGAAGCGCCGTTGAGTAGT
GTCGGTTGCGCACCTTGGAGCTGTTGTGGCTTGTTGGATGGTAGTTCCGC
ACCGTTTGGTGTCGTTTTCTACAGTAGGTCTACAGGCCCTGAGGCGTTGG
GATAGAGGTTGTAGAACGCATGGTTGGCTGTGGGACGACGGTTGTTTCTC
TCTAGAAGCCAATGTGGAATCACGACGCCTCCGCAAGCGTGTTCCTGTTT
CCAGGGGGGCCATCCCTTGAGGAAGGAGTGGTCCTATTCAGGGCTCCCAT
ACTTACGTATTCGACCTGGTGTGCATGGTTCGAGTATGGTCGCACATGCG
ATGACAGCCATGTGTCACAGCACCGGAGACTCCCGAATCGTCGGCAATTC
GGGGCATAGACACTTTTGGGTGCGCCCGTGGAACGCACACTCCCGCCTTG
GTGCGGCAGGAGACGAGTGGTTTTGGAACTGTCAAGGGCATGACCCTTGT
CATGTGACTGTCGTTTACGTTGCTCGGTAATTCTTGCCTGCTTCACGCAC
ACAAACATGCAGTGACCGCTGACTCTGCCCTGTGTTACTCGTTTCATGTG
ATATTGCCCTACTCCCACTTGTTTGTTACCATTTTACGCCACTGCGGTAG
GTCCCACCTCCTGGTGGCGACCGTGATGTCAGCCACGACCGTGAAGATCG
TGGAAAGCAACAGTGAGTGGCGAACACTCCTGTTGTCGGCGGTGTTGCGT
GCTGGGGGGGGTCTGCCCACGGCGTCGAACTTGGAAACGCTGTGTCCATC
CTGCTCATGACCCCGCGATAGCCTACCGGAAATACCGCATGATACATGAT
ATCGAGTGCAGCTACAGCTTCAAGTGCGGTGGATGTACCTGTCGGGGGGT
ATTCGCTAGTCCTAGTTCATGGCGCGTCAGCTCAAATGCCCGGGACTCCT
AGCGTGTGTCTTGTGGGCTAGCGGAGGGGTGTCATGCGCAAATGGGTTTT
CGATTCCTCCCCCGCACCCGCGACTTTGCTTCTGGTGCATGCCGAGCAGG
GCTGGTTGAGTTTCCGTCGGTTTTCAGATGCATGTGGAACGACCTGCCGC
ACCCGGCTCAGTTCGCGATCATATTTCTGGTGAGTGAGGGCACTGCTGAC
CATACCCTCCACGCTGCAACGTGAGGTGGTTGGGGTAAAAAATTCTGTGT
ACGCAAGTAGTTATATTCTACGGCGTTGCTTAGGCTTGCGCTACTGCCGC
TGTGTGCCTCCAGTACAAAACCAAATGGCAGGATGTTTCGATAGCCGCCA
GTCGAACAAGCTCAAGTTGCCGTGTCGTCATCAAGAACCGAGCTCATTTC
GATTTCGGCGGCGTGGTGCGTGATGGTACTCCGAATCCCCCCACAGATGC
TTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGTAAGCTTGACGACGCC
GCGTACGCTCGACTATCTCGTGCCGTAACTGCTTGGATAAATGAGAGGCG
GCATGCACATCAGGGTTAGTCCAAGCACGAGCGATGGTATCGGGGGTTGA
ACACTACAGCGAGCGCTACTTTGAGACTTCAAGAGAGTTAGAATTCGATA
GATACCAATCTGTCTTTGCTGCGGCGGTGAGGCAGTTTTCAGGGTATGGT
TTCCATGGGTTCGATTCGGTACTGTAGGACTCTTCCGTACTGATTGCTGC
GAGTGTGCGCGGTACATCGGATGCGGCACTTTGCATAGCAAGAGAGGTTG
CATGGGGAGGCGGTCAATACATGTACATACACTTAAGAAGGTCAGTCACC
GGTCTTTCTTTTGTGTTTGGGTTTTTCCAGCATGCCCCCCTGTAGTAGTC
ATGAGCTGTGCACCATAGCCTCTTCAAGAGTTCCAGTGCAAGCTTGACGG
GGCTCAAAGACAGCAGGAAACGGTCCCCAAGGTGAATGTATTATGTTTTT
GCGTTCCATTTGAACGAAGGTGGCGTCTTTCCAGGGCAAAATTGGCAAGG
TCATAGCTAGGATAGCCGCGCGGGTTTTACGGGTGTTTGGTGCCGTAAAT
AATGTTCTCCTCCTTACGTTTCGGCTTCGGTGGGGCAGACTCGCAACATC
GTTTGCTGCTACCCGCTGGTTTCTTGAATTTCACGGGGTTGGGTTCGGTG
AGGGATATGAAACCATGTGTATCATGCGCTACAAGTAACGTATTGAATCC
GCTTCACGCGTGATTCTCTTGCCCGGCGTTAAATTCCACACCCTTTTCGG
TCTAATCGACGGGGGGTGGTGAGAGAGTAGCACGCTCGCATTCCACGTTC
TTCGCTTCCAGTGAAGGTGGCAATGGCGCTCCGCGCTGCTTGTCTACCCG
GGGCGGGCAAGGGGAAGCGAATGTCACTTACATGCACAAAGTATGTGCTA
CTGTAGTATTGGATCACCATCCGAACTCAGGGCTGTGCGATTGCCTCGCT
TTCAACAAAGGTGGGAACGGTCCTCCGTTCCGCATATCTCACCGGGGCGG
GAAAGGGGAAGGTTAGAATAAGAATGCCACCATATAGTGTGCTGACGGAT
CACTATCCGGACACA back to topCoding sequence (CDS) from alignment at Scaffold_228:136668..139432+ >EsuBft1515_2a-0001 ID=EsuBft1515_2a-0001|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_228:136668..139432+ (Ectocarpus subulatus male Bft15b)
ATGATCAGGAAGAGCAAGACCCGTGAGGCCCGCAAGCGACCTCCCGCGCT
ACGAAGGTCCCACCTCCTGGTGGCGACCGTGATGTCAGCCACGACCGTGA
AGATCGTGGAAAGCAACAGGCTGGTTGAGTTTCCGTCGGTTTTCAGATGC
ATGTGGAACGACCTGCCGCACCCGGCTCAGTTCGCGATCATATTTCTGAT
GCTTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGTAAGCTTGACGACG
CCGCGTACGCTCGACTATCTCGTGCCGTAACTGCTTGGATAAATGAGAGG
CGGCATGCACATCAGGGTTAG back to top
|