Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 44056.XP_009041040.1 |
| ProteomeId | EsuBft1456_3 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | Coil |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | PTHR22930 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 75 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 4.03e-28 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Plant transposon protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1456_3a-0001 ID=EsuBft1456_3a-0001|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=759bp|location=Sequence derived from alignment at Scaffold_228:89649..91110- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGCGCCTCGTAGAGTTGAGGGCGGTGTTGACCGTGCTCTCGTTGGC
GCTTGCCGCGCTGCATCATCAACAGCAGCTTCTGGTCGCGTTGCTGCGAC
AATTGCACCGGGAGGAAGATGAAGAGGACGACGAAGAACCGCGACCCAAG
CGCCGCCGCACGGTTCGGCCGAGAGCGGACTACCGCACCTTGCCTTGGGC
AAGGATGCTTGAGAAGGCCGACCTATTGCAGGACCCTTCGACGAGAGAGG
CAAAGCAGTTTCGGCGAAGGTTCCGCGTACCCTACCCTTTCTTCCTCTCC
CTTGTAGACGAAGTGAAGGCGGGGAACTGGCCTGGATTCACGACAGACGA
GTTCGAGCTTGGCGGGAGAGGCACCAGGCGCTGCATCCCCGTGGAAACAA
AGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGACGAT
GTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGTTCCA
CAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGAGGA
TGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATGACGAGGTT
GGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGTGGAC
GTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGAAGGCTACG
CTACCCTCGTGTTCAATGTTGCCGTCAGCCACTGTTAGCGTGTTTTGTCG
TGTACGCGG back to topprotein sequence of EsuBft1456_3a-0001 >EsuBft1456_3 ID=EsuBft1456_3|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MVRLVELRAVLTVLSLALAALHHQQQLLVALLRQLHREEDEEDDEEPRPK
RRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLS
LVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDD
VSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIMKTYDEV
GMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHC back to topmRNA from alignment at Scaffold_228:89649..91110- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1456_3a-0001 ID=EsuBft1456_3a-0001|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1462bp|location=Sequence derived from alignment at Scaffold_228:89649..91110- (Ectocarpus subulatus male Bft15b)
ATGGTGCGCCTCGTAGAGTTGAGGGCGGTGTTGACCGTGCTCTCGTTGGC
GCTTGCCGCGCTGCATCATCAACAGCAGCTTCTGGTCGCGTTGCTGCGAC
AATTGCACCGGGAGGAAGATGAAGAGGACGACGAAGAACCGCGACCCAAG
CGCCGCCGCACGGTTCGGCCGAGAGCGGACTACCGCACCTTGCCTTGGGC
AAGGATGCTTGAGAAGGCCGACCTATTGCAGGACCCTTCGACGAGAGAGG
CAAAGCAGTTTCGGCGAAGGTTCCGCGTACCCTACCCTTTCTTCCTCTCC
CTTGTAGACGAAGTGAAGGCGGGGAACTGGCCTGGATTCACGACAGACGA
GTTCGAGCTTGGCGGGAGAGGCACCAGGCGCTGCATCCCCGTGGAAACAA
AGGTGAGCAAACACGCGCTGCACCCTAAAGGTGGGCGTGGGGGTTTGCAG
CATGTATGTTGTGTTGCTCTCCAAGACCAGATGTCGATCAACAAACGAGC
ACGTACATTCCCCCCGTACATCCGTATCTCGGCACACAGAGAGGAGAGAG
CGCAGTCCTCTCCGAGGGTTTGCCGGCGGTGAAGGTTAGCTCTCATCACA
CACACTCGTCCACACTTACCATCACCAGGAATTCCACGCAGTCCTCTAGG
GGCGTGTAAGGTGCTCCTATGATATAGAGATTGCCAGCCTTATCTTACGA
AACAACGAGAGTCGTCCACGGAAGGATCGGCGTACCTCAACAGCAAGCTG
CTCTCCCGACAAACCAAGCTGGAGTCCATCCCTCCGAAACACAAACATCT
TTTTTGTGTTGTTTCTTCCGCACCGTAGCTCTCTAGTCCAAAACATCGAT
GGGAGCACATCGATGGGAGCTCGTAGTCATGTATGCTCTTCTTGCCAGTG
TCGGACATCAACTCTGCTACTGCTGCTCGTCGCTCACTATCAGAGTTGCT
CCTAAACTGGACGAAAATCTATCGTCGCTACTTGCACTGAAGCACACACC
GCCGTACCGTTGACGTATTTATGTTGACTCTGGCTATCACACAACATGAA
GTCCGCAAACGAATCGTGTCCCTGGCCGCCGTTGTCTGGTGATTTATTCG
AACAGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGAC
GATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGTT
CCACAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGA
GGATGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATGACGAG
GTTGGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGTG
GACGTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGAAGGCT
ACGCTACCCTCGTGTTCAATGTTGCCGTCAGCCACTGTTAGCGTGTTTTG
TCGTGTACGCGG back to topCoding sequence (CDS) from alignment at Scaffold_228:89649..91110- >EsuBft1456_3a-0001 ID=EsuBft1456_3a-0001|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_228:89649..91110- (Ectocarpus subulatus male Bft15b)
ATGGTGCGCCTCGTAGAGTTGAGGGCGGTGTTGACCGTGCTCTCGTTGGC
GCTTGCCGCGCTGCATCATCAACAGCAGCTTCTGGTCGCGTTGCTGCGAC
AATTGCACCGGGAGGAAGATGAAGAGGACGACGAAGAACCGCGACCCAAG
CGCCGCCGCACGGTTCGGCCGAGAGCGGACTACCGCACCTTGCCTTGGGC
AAGGATGCTTGAGAAGGCCGACCTATTGCAGGACCCTTCGACGAGAGAGG
CAAAGCAGTTTCGGCGAAGGTTCCGCGTACCCTACCCTTTCTTCCTCTCC
CTTGTAGACGAAGTGAAGGCGGGGAACTGGCCTGGATTCACGACAGACGA
GTTCGAGCTTGGCGGGAGAGGCACCAGGCGCTGCATCCCCGTGGAAACAA
AGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGACGAT
GTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGTTCCA
CAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGAGGA
TGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATGACGAGGTT
GGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGTGGAC
GTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGAAGGCTACG
CTACCCTCGTGTTCAATGTTGCCGTCAGCCACTGTTAG back to top
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