EsuBft2235_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2235_2a-0001
Unique Name	EsuBft2235_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:82174..85526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIA9
ProteomeId	EsuBft2235_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	316
Evalue	2.24e-80
EggNOG OGs	2D5KK@1\|root,2SYVY@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_2a	EsuBft2235_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 82174..85526 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_2a-0001-exon	EsuBft2235_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 82174..82487 +
EsuBft2235_2a-0001-exon	agat-exon-37167	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 82675..85526 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_2a-0001-exon	agat-five_prime_utr-5736	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_228 82174..82375 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_2a-0001-cds	EsuBft2235_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 82376..82487 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_2a-0001-exon	agat-three_prime_utr-8885	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 83178..85526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2235_2a-0001	EsuBft2235_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 82376..83177 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:82174..85526+
coding sequence from alignment at Scaffold_228:82174..85526+

spliced messenger RNA

>EsuBft2235_2a-0001 ID=EsuBft2235_2a-0001|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3166bp|location=Sequence derived from alignment at Scaffold_228:82174..85526+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGTCCTGTACTACGTGTTAAAGAACGAAAAACTCAACGGCGCGAAAC
TCAGGGGCGCGACCAAGAAGAAGGTTTTCTCCGTCCCGGCTAGGAACAGC
ATCAACAAGGCCACGAAGAGTCAAGGGAGGTCGTCTGCACTCAAGGATTC
CGTCGGTAACGCCTACGCTGGGGGGCAAGAGTGGAAGGCCCTCACGCTGA
ACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGACCAG
ATGCTGGAAATGGTGACGTCCATGGGAGCGGCCACGCCGTACAGCATGGG
CAACGTGACGGGAGGAGCCAAGCACGCCAACAAGGCGGCAGGTCCGCGGA
AATGGGTCAGAGAGCATTGTGCCGACGGGTTCGCAGACGACTCGTTTTAC
GACGCTGACGCTCATGGCATGGATCTTCCCGCGTCAATCCACCAAGGGGT
GCACCCGGAATATCTCGAGAATGGAACTGCGGGAACAATCGACTACTTCA
AGAGGCAGCTGTTGCCGAATTGGCTGCAGTCAACCGAGCTACTCCTGGTG
TGCTACGACCGACAGGAACTGGTGCCGGTGATCAAAGGACAAGAACAGCT
TGGGAGGACCGAGAAATTTGGTGAGTGCTCTCGGACCTCCGACCCGAAGT
CAACGGACCTTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGAT
GGCAAGGCGGCGCGGGACGGAATCGCCGCCTACCTCGCCATGCGCGTGCT
AGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGCAT
TCTATGGCGTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GATTCGAGCGAATCTGGCTCCAGCGATGGGGAACCTGACGGGGTGAGCGA
GAAGAGCGTCGACTCCAACTGGAGTGACGGAGACACAGATGATGGTGTTG
CGGATCTCGTAACCGACATCTGGAACTGAGATCCGGCTACTCCTTCAGGC
AGGTACACATATCGTTCCTTGGGATTGGGATTGGGGATGTCGTGCGGCAT
TATTGCACGTCAGATCTCCACGTCGTACCGAAATTTCGTGTGGTCTGATT
TATTCTAATTCCATGTTTCAATGACATATTTCGCGCGTCCCTGTTAGTGG
TTGAACAGGTCCGTCCGTGCTGCACTTCCGTTGGATGCACCCGTCCACGA
AATACAACGACCCCAAATTACGAGATATCAGACGGATGAACATCGCGCGC
GTTTTCTCCCCTGTATTTCCCTACCCAGTTGCGCAGAGAGGTGGACGGGG
GGGATTATTTTTCGGCCGCGCTGGGTGTCCGTTGTTTATTGGCACAGAAT
ATTGTTAGTCGCAAACTGCCTGAAAGGTACGGGGGTGCTGTGTGCGTTCC
GGGCCTGCCTGTGTCGTTTGTACTGACTGTAAATAACGTGTTTGTTGTTT
CCTTTAGTTCGGGCATGATGTTGATAGGTGTGGGCAACCCGGGGGGGGCA
GTCTTGTGTGCGGTGTTCGTGTGTAAGTATTTCCTCGCGTTTTCGACACA
CCCAATGCTCAGTGCGTACAATGTAGTCGTATGCTTTGAGAAAAAGCACT
TCAACAATTATAATGT

protein sequence of EsuBft2235_2a-0001

>EsuBft2235_2 ID=EsuBft2235_2|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=205bp
MFDAAREGGGVVTQDQMLEMVTSMGAATPYSMGNVTGGAKHANKAAGPRK
WVREHCADGFADDSFYDADAHGMDLPASIHQGVHPEYLENGTAGTIDYFK
RQLLPNWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKFGECSRTSDPKS
TDLVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDTKPNGIVAF
YGVGX

mRNA from alignment at Scaffold_228:82174..85526+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2235_2a-0001 ID=EsuBft2235_2a-0001|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3353bp|location=Sequence derived from alignment at Scaffold_228:82174..85526+ (Ectocarpus subulatus male Bft15b)
GTGTGTCCTGTACTACGTGTTAAAGAACGAAAAACTCAACGGCGCGAAAC
TCAGGGGCGCGACCAAGAAGAAGGTTTTCTCCGTCCCGGCTAGGAACAGC
ATCAACAAGGCCACGAAGAGTCAAGGGAGGTCGTCTGCACTCAAGGATTC
CGTCGGTAACGCCTACGCTGGGGGGCAAGAGTGGAAGGCCCTCACGCTGA
ACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGACCAG
ATGCTGGAAATGGTGACGTCCATGGGAGCGGCCACGCCGTACAGCATGGG
CAACGTGACGGGAGGTGAGGAAGAGAGCGTGCGCAATACAGGTTGTCATA
TCGTGCTTTCGCTCCCAGCCGAAGCTCACCCACTCTCCACACCCGTGTTT
CTGAGTGTTATTATCATTATGCATATCACATCACATTGTGTTCACCCCCA
CCCCCCCATCCCCAAACACCCCTGTTGGAAATCTCTCCCCAAACGTATCA
GGAGCCAAGCACGCCAACAAGGCGGCAGGTCCGCGGAAATGGGTCAGAGA
GCATTGTGCCGACGGGTTCGCAGACGACTCGTTTTACGACGCTGACGCTC
ATGGCATGGATCTTCCCGCGTCAATCCACCAAGGGGTGCACCCGGAATAT
CTCGAGAATGGAACTGCGGGAACAATCGACTACTTCAAGAGGCAGCTGTT
GCCGAATTGGCTGCAGTCAACCGAGCTACTCCTGGTGTGCTACGACCGAC
AGGAACTGGTGCCGGTGATCAAAGGACAAGAACAGCTTGGGAGGACCGAG
AAATTTGGTGAGTGCTCTCGGACCTCCGACCCGAAGTCAACGGACCTTGT
TCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGATGGCAAGGCGGCGC
GGGACGGAATCGCCGCCTACCTCGCCATGCGCGTGCTAGCTGATGAAGTC
TGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATTCTATGGCGTCGG
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CTGGCTCCAGCGATGGGGAACCTGACGGGGTGAGCGAGAAGAGCGTCGAC
TCCAACTGGAGTGACGGAGACACAGATGATGGTGTTGCGGATCTCGTAAC
CGACATCTGGAACTGAGATCCGGCTACTCCTTCAGGCAGGTACACATATC
GTTCCTTGGGATTGGGATTGGGGATGTCGTGCGGCATTATTGCACGTCAG
ATCTCCACGTCGTACCGAAATTTCGTGTGGTCTGATTTATTCTAATTCCA
TGTTTCAATGACATATTTCGCGCGTCCCTGTTAGTGGTTGAACAGGTCCG
TCCGTGCTGCACTTCCGTTGGATGCACCCGTCCACGAAATACAACGACCC
CAAATTACGAGATATCAGACGGATGAACATCGCGCGCGTTTTCTCCCCTG
TATTTCCCTACCCAGTTGCGCAGAGAGGTGGACGGGGGGGATTATTTTTC
GGCCGCGCTGGGTGTCCGTTGTTTATTGGCACAGAATATTGTTAGTCGCA
AACTGCCTGAAAGGTACGGGGGTGCTGTGTGCGTTCCGGGCCTGCCTGTG
TCGTTTGTACTGACTGTAAATAACGTGTTTGTTGTTTCCTTTAGTTCGGG
CATGATGTTGATAGGTGTGGGCAACCCGGGGGGGGCAGTCTTGTGTGCGG
TGTTCGTGTGTAAGTATTTCCTCGCGTTTTCGACACACCCAATGCTCAGT
GCGTACAATGTAGTCGTATGCTTTGAGAAAAAGCACTTCAACAATTATAA
TGT

Coding sequence (CDS) from alignment at Scaffold_228:82174..85526+

>EsuBft2235_2a-0001 ID=EsuBft2235_2a-0001|Name=EsuBft2235_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_228:82174..85526+ (Ectocarpus subulatus male Bft15b)
ATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGACGCAAGACCAGAT
GCTGGAAATGGTGACGTCCATGGGAGCGGCCACGCCGTACAGCATGGGCA
ACGTGACGGGAGGAGCCAAGCACGCCAACAAGGCGGCAGGTCCGCGGAAA
TGGGTCAGAGAGCATTGTGCCGACGGGTTCGCAGACGACTCGTTTTACGA
CGCTGACGCTCATGGCATGGATCTTCCCGCGTCAATCCACCAAGGGGTGC
ACCCGGAATATCTCGAGAATGGAACTGCGGGAACAATCGACTACTTCAAG
AGGCAGCTGTTGCCGAATTGGCTGCAGTCAACCGAGCTACTCCTGGTGTG
CTACGACCGACAGGAACTGGTGCCGGTGATCAAAGGACAAGAACAGCTTG
GGAGGACCGAGAAATTTGGTGAGTGCTCTCGGACCTCCGACCCGAAGTCA
ACGGACCTTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGATGG
CAAGGCGGCGCGGGACGGAATCGCCGCCTACCTCGCCATGCGCGTGCTAG
CTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATTC
TATGGCGTCGGNNNN