EsuBft2235_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2235_5a-0001
Unique NameEsuBft2235_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:69057..70835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2235_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length113
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2235_5aEsuBft2235_5aEctocarpus subulatus male Bft15bgeneScaffold_228 69057..70835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2235_5a-0001EsuBft2235_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 70638..70835 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2235_5a-0001-exonEsuBft2235_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 69057..69216 -
EsuBft2235_5a-0001-exonagat-exon-37169Ectocarpus subulatus male Bft15bexonScaffold_228 69504..70137 -
EsuBft2235_5a-0001-exonagat-exon-37168Ectocarpus subulatus male Bft15bexonScaffold_228 70495..70835 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2235_5a-0001-exonagat-three_prime_utr-8888Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 69057..69216 -
EsuBft2235_5a-0001-exonagat-three_prime_utr-8889Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 69504..70137 -
EsuBft2235_5a-0001-exonagat-three_prime_utr-8890Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 70495..70637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2235_5a-0001-cdsEsuBft2235_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 70638..70835 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2235_5a-0001 ID=EsuBft2235_5a-0001|Name=EsuBft2235_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1135bp|location=Sequence derived from alignment at Scaffold_228:69057..70835- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGGTGCAGGAGATGATTGGCATGCTCCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGACCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTCCGCCGAGCAGCCACCGAGAGCTG
TATCCTGCGGTGGTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAG
GCGCAACAAGTGTTTTGTTTACCTGAGTTGTTGCAGAACAAGGGAGGGTG
GAAACGGGCGTGTTTCTTTTGAGAATGTTACGCTTGAAGAGTACGCCCGG
TCTTGGTATTATGCAACTTGACAGGTTGGTGTGTCGGGCAGGTTGTATAT
TTCTCAAAAGCGGGTATCCTTTGGAGAATCGAGTTTGATTGGTTTTTCAG
TTGGAAACAGGTCACGATTTTGAGTTCGTGTGGGATTGCAGATGGTTGAA
CCGAAGGCAGGGAGAACGTACCTGTTCGATGCAGTTTTCGTGTGGAATGC
AGATAGACAGGGAGGGCGTTGCCTGTATGTGTGTGACACCTGAAGAGTCA
GTTGGTGCTGCACAGCAAGGAGTTCGTTCCATCATGTCGGGAGGATTTGT
CAGAGGCGTTGCTCGAGGTAGTAGAGCGTTGCCTAGAATTTGTAATCCGA
GCGTCTGGAGTGGTTTTATCTTTGTCTTCTTGCAGTACGGCCGTTGGAAG
CATCGGTGATATGGACGGCTATTGGAATTTGTTTGAGCCGTTGGAATCTT
TCGTGATATGATCGGCGTGAGGCGTTAAATTTTCTGAGGGGTTTTGATCC
GGTGGCCGGGTTTCCCCTTTCCTTTGGGTTGTCGTCGTGTTTCGGTTTTT
CGGACGTATTTTCGACGCACTAGAGGTTCTTCACTGGCGTAAAGAACCAG
GGAGGGTGTTCGTGCGTACAAGTAGATCGTCGAAAAGTAGCCGTTACGTA
GGACGCAGCTGGGACAACTTGAAGGGGTATGTGCTGAGAGGCTTTGGATG
ATAGTGCGGAGTCCCCGTGTTCTCTCGAGAATTGGGGCCTCTCATCCTTC
TCCCTCTCTCCTCTCTCATGCGAGCTAATACACACAGTTCAATAGCAGCC
CCAAGTCCGCCGGCCCTTAACAGGGCTAGGGCTCA
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protein sequence of EsuBft2235_5a-0001

>EsuBft2235_5 ID=EsuBft2235_5|Name=EsuBft2235_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=66bp
MTEVQEMIGMLPSLLQAESEGQDQEGSAALQEGAAGAAELGVPPSSHREL
YPAVVVXXXXXXXXXX
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mRNA from alignment at Scaffold_228:69057..70835-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2235_5a-0001 ID=EsuBft2235_5a-0001|Name=EsuBft2235_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1779bp|location=Sequence derived from alignment at Scaffold_228:69057..70835- (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATTGGCATGCTCCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGACCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTCCGCCGAGCAGCCACCGAGAGCTG
TATCCTGCGGTGGTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAG
GCGCAACAAGTGTTTTGTTTACCTGAGTTGTTGCAGAACAAGGGAGGGTG
GAAACGGGCGTGTTTCTTTTGAGAATGTTACGCTTGAAGAGTACGCCCGG
TCTTGGTATTATGCAACTTGACAGGTTGGTGTGTCGGGCAGGTATGCAGT
TGTTTGTGGAAGTCGATTTGTTTTCACGTACGGAAGCATGTTGGTTGTGT
CTGTTTTGGGAAGCGACATCTAGGTGATGGCCATGTGCGTGTTCCTCTGG
GCGCCGGTGTTGCGCAAGGGAGGGCACTAGGCTTAGGTTCCTGGTGTGCT
TGTCTATAATGCAGACAGCGTAGATGCTTGGGGTTCGTAGTACAGCGTTA
CCAAGTTGTGGGGGGGCGTTTGTGTTTTTCGTAGTTGTGCTTGAAGGTTC
AGTAGAAAGTTGATGTATCCTTGATTGAAGGAGAACTGAGGATTGATTTG
GTAGTATGCAGATGGTGGACCTTGTTTGAAGCAGGCTACATTCGGCAGGT
TGTATATTTCTCAAAAGCGGGTATCCTTTGGAGAATCGAGTTTGATTGGT
TTTTCAGTTGGAAACAGGTCACGATTTTGAGTTCGTGTGGGATTGCAGAT
GGTTGAACCGAAGGCAGGGAGAACGTACCTGTTCGATGCAGTTTTCGTGT
GGAATGCAGATAGACAGGGAGGGCGTTGCCTGTATGTGTGTGACACCTGA
AGAGTCAGTTGGTGCTGCACAGCAAGGAGTTCGTTCCATCATGTCGGGAG
GATTTGTCAGAGGCGTTGCTCGAGGTAGTAGAGCGTTGCCTAGAATTTGT
AATCCGAGCGTCTGGAGTGGTTTTATCTTTGTCTTCTTGCAGTACGGCCG
TTGGAAGCATCGGTGATATGGACGGCTATTGGAATTTGTTTGAGCCGTTG
GAATCTTTCGTGATATGATCGGCGTGAGGCGTTAAATTTTCTGAGGGGTT
TTGATCCGGTGGCCGGGTTTCCCCTTTCCTTTGGGTTGTCGTCGTGTTTC
GGTTTTTCGGACGTATTTTCGACGCACTAGAGGTTCTTCACTGGCGTAAA
GAACCAGGGAGGGTGTTCGTGCGTACAAGTAGATCGTCGAAAAGTAGCCG
TTACGTAGGACGCAGCTGGGACAACTTGAAGGGTATGTGCTGAGAGGCTT
TGGATGATAGTGCGGAGTCCCCGTGTTCTCTCGAGAATTGGGGCCCTCTC
CTCCTTCTCCCTCTCTCCTCTCTCATGCGAGCTAATACACANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAACTTGAAGGGTATGTGCTGAGAGGCTTTGGATGATAGTG
CGGAGTCCCCGTGTTCTCTCGAGAATTGGGGCCTCTCATCCTTCTCCCTC
TCTCCTCTCTCATGCGAGCTAATACACACAGTTCAATAGCAGCCCCAAGT
CCGCCGGCCCTTAACAGGGCTAGGGCTCA
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Coding sequence (CDS) from alignment at Scaffold_228:69057..70835-

>EsuBft2235_5a-0001 ID=EsuBft2235_5a-0001|Name=EsuBft2235_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_228:69057..70835- (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATTGGCATGCTCCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGACCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTCCGCCGAGCAGCCACCGAGAGCTG
TATCCTGCGGTGGTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
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