Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LN28 |
| ProteomeId | EsuBft1002_4 |
| Protein domains | PTHR19303 |
| Protein domains | IPR004875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 195 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.13e-40 |
| EggNOG OGs | 2CZS4@1|root,2SBGG@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | DDE superfamily endonuclease |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1002_4a-0001 ID=EsuBft1002_4a-0001|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1950bp|location=Sequence derived from alignment at Scaffold_228:49532..52186+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGAGGCACCCGGGGTTGTCGGAGCGAGCCACCCACATCTACGAAGC
AAACCGGATCAACGAAGACGACGAGCCTCGCCTTGAAGCCTTCCACGAGA
CATGGGAAGCGTACCTCGCGGAGACCAAGCTCACGCCGGACCGCATCATC
AACACGGACGAGACAAGGCTCATGTTCCACTCCGCAAGGTACAAAGTCGG
GGAAGGCTATCGTGTCAACAGGCACCAAGGTACCCGGCGCGAGGCGCTCC
AACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCA
CACCTACAACCCTATCATCATCTACAAAGGCCAGCGCATGCAACCCGCTT
GGATCCAGGACAGAACAGCGTCCCCGATGCGAAGTACACCGTCACGGGGT
CATCCTTCGTCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGC
GAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGGTGCCCTTGTGCTCGA
CGGCCACGCCTCGCACACGACCTTCGACGCCATCAGCTTGGCCATCTCTC
TGGACATCGACCTCTTCCAGCTCCCGTCCCACACATCGCACATCACCCAG
CCCTTGGAGGTTGGTACCTTCGGAACCTTCAAGAAGGAGCTCACCAGGGT
GCTCACGGCCTACCCACTGAAAATCGGGGGAAGGAGTCCGGTGAAGCGCG
ACATGGCTGGCGTGATTGCGGAGGCATGGAGAAGGAGCTTCACGCCTGCG
AACAACATGGCGGCGTTCAAAGGGGCGGGTTTGTGGCCGGTGAACATGGA
AAAGGCCATCAGCCGACTACACAGCAAGAGGAAGCAATGGGAGAATGACC
GCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGTTCGAA
GAAGATCTCAGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGAT
GATCGAGGGGCTCCGCGTGAACAGCGTGTTCCTCGGCGGGCTCACCCGCC
TCACCGAGCACTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGGAGAAA
GCCCGAGGGCGGTCTCCAGTCCGCCGAAGAACACCTTGCTAAGGCCAGGA
AGGACAAAGAAGAGAAGGAGGCAGCTGAGAAAGTAAAGGCGGACAACGCC
AAGGCCCGTACAGATGCAAGGGCAGCGGGGGAGGCCAATCTTGGGCAGGG
CGGCGGGCGGAGCGGCGGGCGGGGAGGCGGGTGCGGCGGGCGGGGAGCTG
GAGGGCGAGGCGCAGGGAGGAGNCGGAGGTTGGGGGGCGCGGCTGTGGTG
GGGGTCAGGAAGGGCGAGACGGGCGCGGCCAGGGACAGGGTGGCCGGGGC
CGCCCCGCTGGAGCTCGCGGAGAGGGAAGGGGGGCTGGTCGGCGAGTGGG
GGCCGGTGCTCGCGTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGTGG
TTCCCTTGGTTCAGCCGCCGCCGCCGGCGGCCCCTTCGTCCTCTCGAGGA
CGGAAACAAACCCCGACACCAATCGTTGATGTGTAGACTAGATGCTGTAC
GGTTATCGTTTTTTTATTCGAGTGAAGGATCAATTATTCGAGTGAGACAT
ACAGAAAAGGTCAGTTGAGTGTCGAGGTGCCGATATGCATTCCAGGTTTG
TGCTTCAACAGCTCTTGGGGGTAGTTTTCGAGCGTCCCACGGGGGGGAGG
GGGGATGGGGGGTGTAGAGGTGTTCTCCGGAGCCCCGGGACGTTGAAATG
CTGTCCCCGGGCCTGAAGGGCTATTGTTTTCTTTTTGCTGCGTCGCGACT
TGAGCTGATCGTCTTGAACGAACCTTTCGACGGGGCATTCGAGTGGTGGG
AAACAGGTGCGGTTTTCTGCGAGAAGTCTCACCGCAGTGCCAAACTGCTT
TTTGCCTGGCCCAGTTTACGTGCTTGAATGTATGTAGTCTATGTAAAGAG back to topprotein sequence of EsuBft1002_4a-0001 >EsuBft1002_4 ID=EsuBft1002_4|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=363bp
MARHPGLSERATHIYEANRINEDDEPRLEAFHETWEAYLAETKLTPDRII
NTDETRLMFHSARYKVGEGYRVNRHQGTRREALQLARKYDGGRQHRRRRP
HLQPYHHLQRPAHATRLDPGQNSVPDAKYTVTGSSFVQSHVFLDYLRDLR
EQLDARGLQGKGALVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQ
PLEVGTFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRRSFTPA
NNMAAFKGAGLWPVNMEKAISRLHSKRKQWENDRPIPEDLAVVASKKQFE
EDLSHAALLELKRQGVMIEGLRVNSVFLGGLTRLTEHSKSFATVRAGGEK
ARGRSPVRRRTPC back to topmRNA from alignment at Scaffold_228:49532..52186+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1002_4a-0001 ID=EsuBft1002_4a-0001|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2655bp|location=Sequence derived from alignment at Scaffold_228:49532..52186+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGGCACCCGGGGTTGTCGGAGCGAGCCACCCACATCTACGAAGC
AAACCGGATCAACGAAGACGACGAGCCTCGCCTTGAAGCCTTCCACGAGA
CATGGGAAGCGTACCTCGCGGAGACCAAGCTCACGCCGGACCGCATCATC
AACACGGACGAGACAAGTGAGTTAGGGCAAGGGCTGAGGTGTCAGTGGTG
TCAGTATCGACTGCTGTGGGTTCGTAGGCGAAGTACCAGCAGCACTGCGA
TGTGCGATGTTTGTCACAACAAAGCGGAGCTGCTGCTGCTGCAAAAAAAA
AAAACAGCAGTTGTTCCGCATATCTTTCCGAGGCCGCTGCTGCTGGCCAC
GCTTGTAGCACACAACGCGCATATGATGCTGGGTCCGGTTGAGGGTTCAG
CATGCAACAATCCCTGTGGTCATCTCAGTTATACTCTAGCACAGAAATGG
TAGGGCTCATGTACGATATTCTACACGGTGTTTTTGTTGTGTGCCACACG
CGACAGCGGGCGTGGGCGGTGTTGGTCCGCATGCACGTGCGTTGCTAATG
CTGTGCAAAGTGCAGTCAGGCCGAGACTTGAGTAGGACGCTTTGCTTTTG
TAAACCCACCTTGGTTTCGAGCTCAATGTAAACTTTCATGGGTGTGGGGT
TGTTGATTCACACCCAAAGTCTAAACGAATCCGACTGCTGTTTAAGAAAA
AAAATGGTCCCGTCACCACCGCTGTGTGCCACCGCCCGGTGCGAGCTGCG
CTCATTTGCGTGTGTGCGCGCGCTTTTTTGTGTGTGCGAGCGCTGCTGCT
GCGAAAGTGTGTGTACTCTACTGATTGTTCGACTGCCTCCACCCCCGATG
CACGCGCGTTCTCCGGTGTGTATTGTAGGTTCCACTCCGCAAGGTACAAA
GTCGGGGAAGGCTATCGTGTCAACAGGCACCAAGGTACCCGGCGCGAGGC
GCTCCAACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGAC
GGCCACACCTACAACCCTATCATCATCTACAAAGGCCAGCGCATGCAACC
CGCTTGGATCCAGGACAGAACAGCGTCCCCGATGCGAAGTACACCGTCAC
GGGGTCATCCTTCGTCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACC
TCCGCGAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGGTGCCCTTGTG
CTCGACGGCCACGCCTCGCACACGACCTTCGACGCCATCAGCTTGGCCAT
CTCTCTGGACATCGACCTCTTCCAGCTCCCGTCCCACACATCGCACATCA
CCCAGCCCTTGGAGGTTGGTACCTTCGGAACCTTCAAGAAGGAGCTCACC
AGGGTGCTCACGGCCTACCCACTGAAAATCGGGGGAAGGAGTCCGGTGAA
GCGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAAGGAGCTTCACGC
CTGCGAACAACATGGCGGCGTTCAAAGGGGCGGGTTTGTGGCCGGTGAAC
ATGGAAAAGGCCATCAGCCGACTACACAGCAAGAGGAAGCAATGGGAGAA
TGACCGCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGT
TCGAAGAAGATCTCAGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGA
GTGATGATCGAGGGGCTCCGCGTGAACAGCGTGTTCCTCGGCGGGCTCAC
CCGCCTCACCGAGCACTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGG
AGAAAGCCCGAGGGCGGTCTCCAGTCCGCCGAAGAACACCTTGCTAAGGC
CAGGAAGGACAAAGAAGAGAAGGAGGCAGCTGAGAAAGTAAAGGCGGACA
ACGCCAAGGCCCGTACAGATGCAAGGGCAGCGGGGGAGGCCAATCTTGGG
CAGGGCGGCGGGCGGAGCGGCGGGCGGGGAGGCGGGTGCGGCGGGCGGGG
AGCTGGAGGGCGAGGCGCAGGGAGGAGNCGGAGGTTGGGGGGCGCGGCTG
TGGTGGGGGTCAGGAAGGGCGAGACGGGCGCGGCCAGGGACAGGGTGGCC
GGGGCCGCCCCGCTGGAGCTCGCGGAGAGGGAAGGGGGGCTGGTCGGCGA
GTGGGGGCCGGTGCTCGCGTCCAAGGAGGAGCGGGACGGCCGAGAGGGGC
GGTGGTTCCCTTGGTTCAGCCGCCGCCGCCGGCGGCCCCTTCGTCCTCTC
GAGGACGGAAACAAACCCCGACACCAATCGTTGATGTGTAGACTAGATGC
TGTACGGTTATCGTTTTTTTATTCGAGTGAAGGATCAATTATTCGAGTGA
GACATACAGAAAAGGTCAGTTGAGTGTCGAGGTGCCGATATGCATTCCAG
GTTTGTGCTTCAACAGCTCTTGGGGGTAGTTTTCGAGCGTCCCACGGGGG
GGAGGGGGGATGGGGGGTGTAGAGGTGTTCTCCGGAGCCCCGGGACGTTG
AAATGCTGTCCCCGGGCCTGAAGGGCTATTGTTTTCTTTTTGCTGCGTCG
CGACTTGAGCTGATCGTCTTGAACGAACCTTTCGACGGGGCATTCGAGTG
GTGGGAAACAGGTGCGGTTTTCTGCGAGAAGTCTCACCGCAGTGCCAAAC
TGCTTTTTGCCTGGCCCAGTTTACGTGCTTGAATGTATGTAGTCTATGTA
AAGAG back to topCoding sequence (CDS) from alignment at Scaffold_228:49532..52186+ >EsuBft1002_4a-0001 ID=EsuBft1002_4a-0001|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1092bp|location=Sequence derived from alignment at Scaffold_228:49532..52186+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGGCACCCGGGGTTGTCGGAGCGAGCCACCCACATCTACGAAGC
AAACCGGATCAACGAAGACGACGAGCCTCGCCTTGAAGCCTTCCACGAGA
CATGGGAAGCGTACCTCGCGGAGACCAAGCTCACGCCGGACCGCATCATC
AACACGGACGAGACAAGGCTCATGTTCCACTCCGCAAGGTACAAAGTCGG
GGAAGGCTATCGTGTCAACAGGCACCAAGGTACCCGGCGCGAGGCGCTCC
AACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCA
CACCTACAACCCTATCATCATCTACAAAGGCCAGCGCATGCAACCCGCTT
GGATCCAGGACAGAACAGCGTCCCCGATGCGAAGTACACCGTCACGGGGT
CATCCTTCGTCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGC
GAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGGTGCCCTTGTGCTCGA
CGGCCACGCCTCGCACACGACCTTCGACGCCATCAGCTTGGCCATCTCTC
TGGACATCGACCTCTTCCAGCTCCCGTCCCACACATCGCACATCACCCAG
CCCTTGGAGGTTGGTACCTTCGGAACCTTCAAGAAGGAGCTCACCAGGGT
GCTCACGGCCTACCCACTGAAAATCGGGGGAAGGAGTCCGGTGAAGCGCG
ACATGGCTGGCGTGATTGCGGAGGCATGGAGAAGGAGCTTCACGCCTGCG
AACAACATGGCGGCGTTCAAAGGGGCGGGTTTGTGGCCGGTGAACATGGA
AAAGGCCATCAGCCGACTACACAGCAAGAGGAAGCAATGGGAGAATGACC
GCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGTTCGAA
GAAGATCTCAGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGAT
GATCGAGGGGCTCCGCGTGAACAGCGTGTTCCTCGGCGGGCTCACCCGCC
TCACCGAGCACTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGGAGAAA
GCCCGAGGGCGGTCTCCAGTCCGCCGAAGAACACCTTGCTAA back to top
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