Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1002_8 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 180 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1002_8a-0001 ID=EsuBft1002_8a-0001|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1802bp|location=Sequence derived from alignment at Scaffold_228:7524..9768- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCCTACTGGAAAGCAAGAGTCTCCTTGATTTTCCTTCCGGGTTCAA
GTGCACGTGGTACGGGCTGCCGCACCCTGTCCAGTTCGCGGTGTTGATTC
TGGCCTTGCGCTCCGCCCGTGCCCCACAGATGCCGGCGCTCCTGTACGGG
GTAAATCGGCTCTTTGACACGCTCGAAAAGGCTTCGCACAATTACCTCTG
CCCCTACACCACCGCCGCTTACATGGACGCGAGAGAAGGCGGGCGTCCCG
AATATGTCGAAGGCACATTGTGTCAACGGAAGCTGGTCGCTTGCGCTAAC
AAGGGGAATCCACGCGCGCCACTGCCCCTACATCACCACCGCTTGGAAGG
TAAAGAGGAGGTCGGGGCGCCCTGCATGTTGTCCGACGCACATGATGTCA
ACGGAAGCTGGGTGCTAGCTCTGGGAAGGGGCTCCAAGAGTTGTCCTTCG
ATGCCAGATGTGCACTGCTGTGTTGGGGATGAGCGGCCATCATCCACGGG
ATGGGCTTGAACGTGCACGATGGTCAAGGGTGCGTATTGGCGCAGCATAT
CGACAACACATCAATGTAGCAACTGCGTGCATAGAGGGTTTGTGGCGGGT
GTGTTATTAATTGCGGCTCCAAGGGAGAGCTTTCGGGGGTGTCTCGGGTG
TCCATTTTACGCCATGCCCGATCCGTTTCAGGGTATCAACGGGAGGTCGA
AACACACATGCAAACTACACGTACGTATAGTTTAGACAACAATATATTCG
ACTACAACATACATAAATGAAGCTAGTCGAGACTACGTGTTCACAGTAGT
TTCATCATTTTCCGGTGTCGTAACGTTCTTTTATTCCTTGATCCAAACGC
GTGTTTTGAAGATGAAGTTGCCAACACAGCCAGTGCAGGCGCTCGTGTTG
TAGCAAGTTTTTGGGCTTGCTAGAAGGATGTGCAATTTCCCCCCTGAGGT
AATTCGGTCTGGTGTGGCACTATATTCGTGAATATATTCTGGATTCTGAG
TGAAGTACCAACCATCGAGTGATCAGGGCACCCGTCCCCTCACGGTAGTT
TTGCTTGGCGTCAGAATACATGTCATATTGTGCTCATCTGTAGGATGCGT
TCGCTCGAGCAGATAGAAAGATGCTCACCCTCGTCGATTTTTGCAATGGG
ATTAGGGTCTGCTTACCGTTTGTGGCGCGCGTGAACGCTTTGGTGGTAAT
GCAAGGCACGCGCTTGGGGTTGTCGTCATCGTAGCGATTGTCGTTACACT
CGTTCGGTATTTTGGTATTTATCGACATGTGGGAACGGGACGTGTTGGTG
AGATCGGCGATTTGGGGTCCGAGCGAATGAATGCGCCAAGGTGTTGATTT
GTAAGTCCCCATCTAACAGCATATATCGTTTCGTTCTCTTGTTTTGTTTT
GGGGGGCGCAAACTTCCATTAGAAGCACATTTTAGACTAGAGGGAACATA
TGGAAATAGCGCGAGTAGATGTACCCATGCATATGTTATTTGTTATGGTT
GATATAGGAAATTTAGGTGCGATGTGGACAATACCTTTAGTCTAGACCTG
TGTGGTTTTCGCGCTTTTTGCGCTTTTCGCGCTGTTCGCGCTTTTCGCGT
CGAAAAACGGCTTGTTATATGTTTCAGCGAAAGTAACATGCACGGGTGTG
GCGCGATTCGAACTCACAGCGCGCCTGCAGTTGGACCGTTGCAACACCAC
TGGGCCGATGTTTTCGAATGTATGTCCGAGATATACTAGACTTTGGTTTC
TGATGCGAATAGAGGAATGATCTGAGCCACATCTGGTCCTGACCATCATT
GG back to topprotein sequence of EsuBft1002_8a-0001 >EsuBft1002_8 ID=EsuBft1002_8|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MVLLESKSLLDFPSGFKCTWYGLPHPVQFAVLILALRSARAPQMPALLYG
VNRLFDTLEKASHNYLCPYTTAAYMDAREGGRPEYVEGTLCQRKLVACAN
KGNPRAPLPLHHHRLEGKEEVGAPCMLSDAHDVNGSWVLALGRGSKSCPS
MPDVHCCVGDERPSSTGWA back to topmRNA from alignment at Scaffold_228:7524..9768- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1002_8a-0001 ID=EsuBft1002_8a-0001|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2245bp|location=Sequence derived from alignment at Scaffold_228:7524..9768- (Ectocarpus subulatus male Bft15b)
ATGGTCCTACTGGAAAGCAAGAGTGAGTGTGGCGTAACCGTGACGATAAC
AGTTGGGGCACATCGTACCACGAGTAGCACGCCTTCTACGGCGAGCACAG
GGCCCTGGTGGGTGTCTTTTGTCTCGAATTGGGGCCGCCGTACATGGATG
AATGTTACCACTCCACCCCACGGACGGCGTTATTGCTGTTGGCGGCATAT
TTTGCTGTGTTCATTGTGAGCCTTTCCAGGTCTCCTTGATTTTCCTTCCG
GGTTCAAGTGCACGTGGTACGGGCTGCCGCACCCTGTCCAGTTCGCGGTG
TTGATTCTGGTGAGTACGCTCTGAGCTGTCTCCATGCTCTTCGCCATACT
TTGTATTGGAGCTCTGTTTGCGTTGAGAACAACACTTCGTTGTTGTTATT
TGCGAGATCGGTTTCTTCCGTGCTTGTTCTTGCCTCGGCGGGTACTTGAT
AAATGACCAAGCGGCGAAAGGACTGGTCTTGGCGCATGATCGAACGTGAT
CAAACTGCGTGTCAAGAAGAATCAAGCCGTTTTTGAAGCCAGCAGGCCTT
GCGCTCCGCCCGTGCCCCACAGATGCCGGCGCTCCTGTACGGGGTAAATC
GGCTCTTTGACACGCTCGAAAAGGCTTCGCACAATTACCTCTGCCCCTAC
ACCACCGCCGCTTACATGGACGCGAGAGAAGGCGGGCGTCCCGAATATGT
CGAAGGCACATTGTGTCAACGGAAGCTGGTCGCTTGCGCTAACAAGGGGA
ATCCACGCGCGCCACTGCCCCTACATCACCACCGCTTGGAAGGTAAAGAG
GAGGTCGGGGCGCCCTGCATGTTGTCCGACGCACATGATGTCAACGGAAG
CTGGGTGCTAGCTCTGGGAAGGGGCTCCAAGAGTTGTCCTTCGATGCCAG
ATGTGCACTGCTGTGTTGGGGATGAGCGGCCATCATCCACGGGATGGGCT
TGAACGTGCACGATGGTCAAGGGTGCGTATTGGCGCAGCATATCGACAAC
ACATCAATGTAGCAACTGCGTGCATAGAGGGTTTGTGGCGGGTGTGTTAT
TAATTGCGGCTCCAAGGGAGAGCTTTCGGGGGTGTCTCGGGTGTCCATTT
TACGCCATGCCCGATCCGTTTCAGGGTATCAACGGGAGGTCGAAACACAC
ATGCAAACTACACGTACGTATAGTTTAGACAACAATATATTCGACTACAA
CATACATAAATGAAGCTAGTCGAGACTACGTGTTCACAGTAGTTTCATCA
TTTTCCGGTGTCGTAACGTTCTTTTATTCCTTGATCCAAACGCGTGTTTT
GAAGATGAAGTTGCCAACACAGCCAGTGCAGGCGCTCGTGTTGTAGCAAG
TTTTTGGGCTTGCTAGAAGGATGTGCAATTTCCCCCCTGAGGTAATTCGG
TCTGGTGTGGCACTATATTCGTGAATATATTCTGGATTCTGAGTGAAGTA
CCAACCATCGAGTGATCAGGGCACCCGTCCCCTCACGGTAGTTTTGCTTG
GCGTCAGAATACATGTCATATTGTGCTCATCTGTAGGATGCGTTCGCTCG
AGCAGATAGAAAGATGCTCACCCTCGTCGATTTTTGCAATGGGATTAGGG
TCTGCTTACCGTTTGTGGCGCGCGTGAACGCTTTGGTGGTAATGCAAGGC
ACGCGCTTGGGGTTGTCGTCATCGTAGCGATTGTCGTTACACTCGTTCGG
TATTTTGGTATTTATCGACATGTGGGAACGGGACGTGTTGGTGAGATCGG
CGATTTGGGGTCCGAGCGAATGAATGCGCCAAGGTGTTGATTTGTAAGTC
CCCATCTAACAGCATATATCGTTTCGTTCTCTTGTTTTGTTTTGGGGGGC
GCAAACTTCCATTAGAAGCACATTTTAGACTAGAGGGAACATATGGAAAT
AGCGCGAGTAGATGTACCCATGCATATGTTATTTGTTATGGTTGATATAG
GAAATTTAGGTGCGATGTGGACAATACCTTTAGTCTAGACCTGTGTGGTT
TTCGCGCTTTTTGCGCTTTTCGCGCTGTTCGCGCTTTTCGCGTCGAAAAA
CGGCTTGTTATATGTTTCAGCGAAAGTAACATGCACGGGTGTGGCGCGAT
TCGAACTCACAGCGCGCCTGCAGTTGGACCGTTGCAACACCACTGGGCCG
ATGTTTTCGAATGTATGTCCGAGATATACTAGACTTTGGTTTCTGATGCG
AATAGAGGAATGATCTGAGCCACATCTGGTCCTGACCATCATTGG back to topCoding sequence (CDS) from alignment at Scaffold_228:7524..9768- >EsuBft1002_8a-0001 ID=EsuBft1002_8a-0001|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_228:7524..9768- (Ectocarpus subulatus male Bft15b)
ATGGTCCTACTGGAAAGCAAGAGTCTCCTTGATTTTCCTTCCGGGTTCAA
GTGCACGTGGTACGGGCTGCCGCACCCTGTCCAGTTCGCGGTGTTGATTC
TGGCCTTGCGCTCCGCCCGTGCCCCACAGATGCCGGCGCTCCTGTACGGG
GTAAATCGGCTCTTTGACACGCTCGAAAAGGCTTCGCACAATTACCTCTG
CCCCTACACCACCGCCGCTTACATGGACGCGAGAGAAGGCGGGCGTCCCG
AATATGTCGAAGGCACATTGTGTCAACGGAAGCTGGTCGCTTGCGCTAAC
AAGGGGAATCCACGCGCGCCACTGCCCCTACATCACCACCGCTTGGAAGG
TAAAGAGGAGGTCGGGGCGCCCTGCATGTTGTCCGACGCACATGATGTCA
ACGGAAGCTGGGTGCTAGCTCTGGGAAGGGGCTCCAAGAGTTGTCCTTCG
ATGCCAGATGTGCACTGCTGTGTTGGGGATGAGCGGCCATCATCCACGGG
ATGGGCTTGA back to top
|