EsuBft1002_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1002_8a-0001
Unique NameEsuBft1002_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:7524..9768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1002_8
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length180
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_8aEsuBft1002_8aEctocarpus subulatus male Bft15bgeneScaffold_228 7524..9768 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_8a-0001-exonagat-exon-62796Ectocarpus subulatus male Bft15bexonScaffold_228 7524..9223 -
EsuBft1002_8a-0001-exonEsuBft1002_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 9460..9539 -
EsuBft1002_8a-0001-exonagat-exon-62795Ectocarpus subulatus male Bft15bexonScaffold_228 9747..9768 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_8a-0001-exonagat-three_prime_utr-18Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 7524..8815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_8a-0001-cdsEsuBft1002_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 8816..9223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_8a-0001EsuBft1002_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 8816..9768 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1002_8a-0001 ID=EsuBft1002_8a-0001|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1802bp|location=Sequence derived from alignment at Scaffold_228:7524..9768- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTACTGGAAAGCAAGAGTCTCCTTGATTTTCCTTCCGGGTTCAA
GTGCACGTGGTACGGGCTGCCGCACCCTGTCCAGTTCGCGGTGTTGATTC
TGGCCTTGCGCTCCGCCCGTGCCCCACAGATGCCGGCGCTCCTGTACGGG
GTAAATCGGCTCTTTGACACGCTCGAAAAGGCTTCGCACAATTACCTCTG
CCCCTACACCACCGCCGCTTACATGGACGCGAGAGAAGGCGGGCGTCCCG
AATATGTCGAAGGCACATTGTGTCAACGGAAGCTGGTCGCTTGCGCTAAC
AAGGGGAATCCACGCGCGCCACTGCCCCTACATCACCACCGCTTGGAAGG
TAAAGAGGAGGTCGGGGCGCCCTGCATGTTGTCCGACGCACATGATGTCA
ACGGAAGCTGGGTGCTAGCTCTGGGAAGGGGCTCCAAGAGTTGTCCTTCG
ATGCCAGATGTGCACTGCTGTGTTGGGGATGAGCGGCCATCATCCACGGG
ATGGGCTTGAACGTGCACGATGGTCAAGGGTGCGTATTGGCGCAGCATAT
CGACAACACATCAATGTAGCAACTGCGTGCATAGAGGGTTTGTGGCGGGT
GTGTTATTAATTGCGGCTCCAAGGGAGAGCTTTCGGGGGTGTCTCGGGTG
TCCATTTTACGCCATGCCCGATCCGTTTCAGGGTATCAACGGGAGGTCGA
AACACACATGCAAACTACACGTACGTATAGTTTAGACAACAATATATTCG
ACTACAACATACATAAATGAAGCTAGTCGAGACTACGTGTTCACAGTAGT
TTCATCATTTTCCGGTGTCGTAACGTTCTTTTATTCCTTGATCCAAACGC
GTGTTTTGAAGATGAAGTTGCCAACACAGCCAGTGCAGGCGCTCGTGTTG
TAGCAAGTTTTTGGGCTTGCTAGAAGGATGTGCAATTTCCCCCCTGAGGT
AATTCGGTCTGGTGTGGCACTATATTCGTGAATATATTCTGGATTCTGAG
TGAAGTACCAACCATCGAGTGATCAGGGCACCCGTCCCCTCACGGTAGTT
TTGCTTGGCGTCAGAATACATGTCATATTGTGCTCATCTGTAGGATGCGT
TCGCTCGAGCAGATAGAAAGATGCTCACCCTCGTCGATTTTTGCAATGGG
ATTAGGGTCTGCTTACCGTTTGTGGCGCGCGTGAACGCTTTGGTGGTAAT
GCAAGGCACGCGCTTGGGGTTGTCGTCATCGTAGCGATTGTCGTTACACT
CGTTCGGTATTTTGGTATTTATCGACATGTGGGAACGGGACGTGTTGGTG
AGATCGGCGATTTGGGGTCCGAGCGAATGAATGCGCCAAGGTGTTGATTT
GTAAGTCCCCATCTAACAGCATATATCGTTTCGTTCTCTTGTTTTGTTTT
GGGGGGCGCAAACTTCCATTAGAAGCACATTTTAGACTAGAGGGAACATA
TGGAAATAGCGCGAGTAGATGTACCCATGCATATGTTATTTGTTATGGTT
GATATAGGAAATTTAGGTGCGATGTGGACAATACCTTTAGTCTAGACCTG
TGTGGTTTTCGCGCTTTTTGCGCTTTTCGCGCTGTTCGCGCTTTTCGCGT
CGAAAAACGGCTTGTTATATGTTTCAGCGAAAGTAACATGCACGGGTGTG
GCGCGATTCGAACTCACAGCGCGCCTGCAGTTGGACCGTTGCAACACCAC
TGGGCCGATGTTTTCGAATGTATGTCCGAGATATACTAGACTTTGGTTTC
TGATGCGAATAGAGGAATGATCTGAGCCACATCTGGTCCTGACCATCATT
GG
back to top

protein sequence of EsuBft1002_8a-0001

>EsuBft1002_8 ID=EsuBft1002_8|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MVLLESKSLLDFPSGFKCTWYGLPHPVQFAVLILALRSARAPQMPALLYG
VNRLFDTLEKASHNYLCPYTTAAYMDAREGGRPEYVEGTLCQRKLVACAN
KGNPRAPLPLHHHRLEGKEEVGAPCMLSDAHDVNGSWVLALGRGSKSCPS
MPDVHCCVGDERPSSTGWA
back to top

mRNA from alignment at Scaffold_228:7524..9768-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1002_8a-0001 ID=EsuBft1002_8a-0001|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2245bp|location=Sequence derived from alignment at Scaffold_228:7524..9768- (Ectocarpus subulatus male Bft15b)
ATGGTCCTACTGGAAAGCAAGAGTGAGTGTGGCGTAACCGTGACGATAAC
AGTTGGGGCACATCGTACCACGAGTAGCACGCCTTCTACGGCGAGCACAG
GGCCCTGGTGGGTGTCTTTTGTCTCGAATTGGGGCCGCCGTACATGGATG
AATGTTACCACTCCACCCCACGGACGGCGTTATTGCTGTTGGCGGCATAT
TTTGCTGTGTTCATTGTGAGCCTTTCCAGGTCTCCTTGATTTTCCTTCCG
GGTTCAAGTGCACGTGGTACGGGCTGCCGCACCCTGTCCAGTTCGCGGTG
TTGATTCTGGTGAGTACGCTCTGAGCTGTCTCCATGCTCTTCGCCATACT
TTGTATTGGAGCTCTGTTTGCGTTGAGAACAACACTTCGTTGTTGTTATT
TGCGAGATCGGTTTCTTCCGTGCTTGTTCTTGCCTCGGCGGGTACTTGAT
AAATGACCAAGCGGCGAAAGGACTGGTCTTGGCGCATGATCGAACGTGAT
CAAACTGCGTGTCAAGAAGAATCAAGCCGTTTTTGAAGCCAGCAGGCCTT
GCGCTCCGCCCGTGCCCCACAGATGCCGGCGCTCCTGTACGGGGTAAATC
GGCTCTTTGACACGCTCGAAAAGGCTTCGCACAATTACCTCTGCCCCTAC
ACCACCGCCGCTTACATGGACGCGAGAGAAGGCGGGCGTCCCGAATATGT
CGAAGGCACATTGTGTCAACGGAAGCTGGTCGCTTGCGCTAACAAGGGGA
ATCCACGCGCGCCACTGCCCCTACATCACCACCGCTTGGAAGGTAAAGAG
GAGGTCGGGGCGCCCTGCATGTTGTCCGACGCACATGATGTCAACGGAAG
CTGGGTGCTAGCTCTGGGAAGGGGCTCCAAGAGTTGTCCTTCGATGCCAG
ATGTGCACTGCTGTGTTGGGGATGAGCGGCCATCATCCACGGGATGGGCT
TGAACGTGCACGATGGTCAAGGGTGCGTATTGGCGCAGCATATCGACAAC
ACATCAATGTAGCAACTGCGTGCATAGAGGGTTTGTGGCGGGTGTGTTAT
TAATTGCGGCTCCAAGGGAGAGCTTTCGGGGGTGTCTCGGGTGTCCATTT
TACGCCATGCCCGATCCGTTTCAGGGTATCAACGGGAGGTCGAAACACAC
ATGCAAACTACACGTACGTATAGTTTAGACAACAATATATTCGACTACAA
CATACATAAATGAAGCTAGTCGAGACTACGTGTTCACAGTAGTTTCATCA
TTTTCCGGTGTCGTAACGTTCTTTTATTCCTTGATCCAAACGCGTGTTTT
GAAGATGAAGTTGCCAACACAGCCAGTGCAGGCGCTCGTGTTGTAGCAAG
TTTTTGGGCTTGCTAGAAGGATGTGCAATTTCCCCCCTGAGGTAATTCGG
TCTGGTGTGGCACTATATTCGTGAATATATTCTGGATTCTGAGTGAAGTA
CCAACCATCGAGTGATCAGGGCACCCGTCCCCTCACGGTAGTTTTGCTTG
GCGTCAGAATACATGTCATATTGTGCTCATCTGTAGGATGCGTTCGCTCG
AGCAGATAGAAAGATGCTCACCCTCGTCGATTTTTGCAATGGGATTAGGG
TCTGCTTACCGTTTGTGGCGCGCGTGAACGCTTTGGTGGTAATGCAAGGC
ACGCGCTTGGGGTTGTCGTCATCGTAGCGATTGTCGTTACACTCGTTCGG
TATTTTGGTATTTATCGACATGTGGGAACGGGACGTGTTGGTGAGATCGG
CGATTTGGGGTCCGAGCGAATGAATGCGCCAAGGTGTTGATTTGTAAGTC
CCCATCTAACAGCATATATCGTTTCGTTCTCTTGTTTTGTTTTGGGGGGC
GCAAACTTCCATTAGAAGCACATTTTAGACTAGAGGGAACATATGGAAAT
AGCGCGAGTAGATGTACCCATGCATATGTTATTTGTTATGGTTGATATAG
GAAATTTAGGTGCGATGTGGACAATACCTTTAGTCTAGACCTGTGTGGTT
TTCGCGCTTTTTGCGCTTTTCGCGCTGTTCGCGCTTTTCGCGTCGAAAAA
CGGCTTGTTATATGTTTCAGCGAAAGTAACATGCACGGGTGTGGCGCGAT
TCGAACTCACAGCGCGCCTGCAGTTGGACCGTTGCAACACCACTGGGCCG
ATGTTTTCGAATGTATGTCCGAGATATACTAGACTTTGGTTTCTGATGCG
AATAGAGGAATGATCTGAGCCACATCTGGTCCTGACCATCATTGG
back to top

Coding sequence (CDS) from alignment at Scaffold_228:7524..9768-

>EsuBft1002_8a-0001 ID=EsuBft1002_8a-0001|Name=EsuBft1002_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_228:7524..9768- (Ectocarpus subulatus male Bft15b)
ATGGTCCTACTGGAAAGCAAGAGTCTCCTTGATTTTCCTTCCGGGTTCAA
GTGCACGTGGTACGGGCTGCCGCACCCTGTCCAGTTCGCGGTGTTGATTC
TGGCCTTGCGCTCCGCCCGTGCCCCACAGATGCCGGCGCTCCTGTACGGG
GTAAATCGGCTCTTTGACACGCTCGAAAAGGCTTCGCACAATTACCTCTG
CCCCTACACCACCGCCGCTTACATGGACGCGAGAGAAGGCGGGCGTCCCG
AATATGTCGAAGGCACATTGTGTCAACGGAAGCTGGTCGCTTGCGCTAAC
AAGGGGAATCCACGCGCGCCACTGCCCCTACATCACCACCGCTTGGAAGG
TAAAGAGGAGGTCGGGGCGCCCTGCATGTTGTCCGACGCACATGATGTCA
ACGGAAGCTGGGTGCTAGCTCTGGGAAGGGGCTCCAAGAGTTGTCCTTCG
ATGCCAGATGTGCACTGCTGTGTTGGGGATGAGCGGCCATCATCCACGGG
ATGGGCTTGA
back to top