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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7FGX1 |
| ProteomeId | EsuBft1180_7 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 99 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.32e-40 |
| EggNOG OGs | KOG2800@1|root,KOG4341@1|root,KOG2800@2759|Eukaryota,KOG4341@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | C2orf69 |
| GOs | GO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869 |
| Description | modulation by host of viral RNA genome replication |
| COG category | KLT |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1180_7a-0001 ID=EsuBft1180_7a-0001|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=994bp|location=Sequence derived from alignment at Scaffold_106:201054..203134+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTGCCCGATACTTTTGCGACCAGCTTTGCGATCGGTATCGTATGTACGA
AGAAGGTCAATTGGATGCCAAGGGGAAGAGGCTACTCTTGGAGGCCTTGG
CTTCAGGGGACAGTGCCCTTAAGATGTCGTCAGCCGTCGCTTCGGCACGA
ACGGTGTTCCGCGAGAGGGAACTTCAGGAGAATGCCGAGCTGCAGGCGGC
GATATCGTTGGGCAAGTACATGCAGGAGCTGAAGGTGTGGGCTCAGGAGG
AGATGGACGCTTCCGTTTCGCAAAAGGCTCGTTACCTCAAGGGCGGCTCG
GAGTCTTCCAAAGGCGGCAGATCTTCTACGTCGTCCCGTGTAGGACTGCT
GCAGATGCAAGATCAAGACCAGACAGATTTCTCCGCATCCGTCGACGAGA
ATTTGGAGTGGCACCCCAGCACAAACAACGGCAGCACGACACAAGATGAC
ACGGCCGACGAGTACAACAGACAATACATGCGGGGAGGAGAGTACGGGGA
ACAGTACGTCGTGCAAGCTTACAATCAGGCGGCAGTGAACGACGAATACA
CCGGTCAAGACGGCTATGCCCAACAAGAACAACCTCGGGAGGATCACGGC
CATTATAAATAATAGTCTCAATGGCGAGCGGTCTGCTCTTCTTTCACGTT
GATCATCATCATGAATCAGAGAGCTTTACCTCGCGGCCATGATAGGGTGA
ACAATTTTGCCGTCATCGCTGTATCTATCGCCGTAACAGCGCCAGGAATG
CGCGCGTTTCTGTGTTGCGTTGGTTGGTCCTCATGAGGTGCACAGAACGA
GGCTTAGGCTCAACGGCGGTCGCCGACGGCTAGGTTTGTTTTCCCTTTAA
ATATCCTGTAGACAGATACGCCATGTAGCCCAGACACTGTTTCAACAAGT
TAACGGATACGATTGTTCTATTCTACGACGTGATACGTTTTGTTTATTTA
TTTCTCGTTGGCTGCTCCCTCCCCCGTCGCAAAGAATGGAATTG back to topprotein sequence of EsuBft1180_7a-0001 >EsuBft1180_7 ID=EsuBft1180_7|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MYEEGQLDAKGKRLLLEALASGDSALKMSSAVASARTVFRERELQENAEL
QAAISLGKYMQELKVWAQEEMDASVSQKARYLKGGSESSKGGRSSTSSRV
GLLQMQDQDQTDFSASVDENLEWHPSTNNGSTTQDDTADEYNRQYMRGGE
YGEQYVVQAYNQAAVNDEYTGQDGYAQQEQPREDHGHYK back to topmRNA from alignment at Scaffold_106:201054..203134+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1180_7a-0001 ID=EsuBft1180_7a-0001|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2081bp|location=Sequence derived from alignment at Scaffold_106:201054..203134+ (Ectocarpus subulatus male Bft15b)
TTTGCCCGATACTTTTGCGACCAGCTTTGCGATCGGTATCGTATGTACGA
AGAAGGTCAATTGGATGCCAAGGTACGATGAGGATGCGATGCGATAAGAT
ACAGCGGTAGCTCGTGTTCCTGTTCGCGAAGCAATGCACCACTGGCCAAC
GTAGACAGGAAGCGCTAGTTCTTAAGATTTTTGGGGTTGTGGATGTCAAA
AAAAAGAGGATGCGAGCAACGGCAATGAGCTGCCCATCAATAATTCGGAG
TGTTCATTCATCGCAACGCTTGGTTGGCTGGATTTGTTCGCGTCATTGTG
CGCGACGTTGCAGGGGAAGAGGCTACTCTTGGAGGCCTTGGCTTCAGGGG
ACAGTGCCCTTAAGATGTCGTCAGCCGTCGCTTCGGCACGAACGGTGTTC
CGCGAGAGGGAACTTCAGGAGAATGCCGAGCTGCAGGTGATAGGGAACAA
CCTTGCAACTTCGCGCCAATCGCCGAAAACGCTGAGCTCGTGCGGATCGA
GGTGGTCTCAATAAATCACTTTCCGCATCGGGGTCTCTCAATTTCGTCGT
GCGTGATGGTGCAACGATAAGTTCGGCGTGTTGGGCTGCACCAACAGTGG
CAGTTTCAAGAGCTTTTTTGGTGATAATGAAGCATCGCATGCGTGGTTTC
GACCGTTCCACCGAGAACCTGAAAACTAGTTCGCGGAGGTTGGGTGCCAC
AAGACGATGCGTGCTGTAGATAGACTGCAGATCGAGCGTCGTCAGGCCCC
ATCGCTTGTCAACATTGATGATATCGTTTCATCACGACTTTGGTAACCAC
ACGGACCTGTCTGACATCTTGTTCGACGTCCGCGCGCGGGTGCCCTGCCG
TTCGCGAAACGGTGACACGGTCTAGGCGGCGATATCGTTGGGCAAGTACA
TGCAGGAGCTGAAGGTGTGGGCTCAGGAGGAGATGGACGCTTCCGTTTCG
CAAAAGGCTCGTTACCTCAAGGGCGGCTCGGAGTCTTCCAAAGGTGAGAA
GAAACCGTTGCTGAAGCGCACGCGCCAACCCAATTGGCCACGTGGCTAAC
ACAGCGCTCGCGTTTAAGTCCTGAATGTATGACGATTCGACAAGAGTACT
GTACCTTTGCTGCCGCAAGACGAGCAAAATCACAGTTGAGGCAGAATGGT
GTTGTTTAGTGCATGTTTTGTAGACTCTGGTCGTTTGTTTGCTCTCAAGC
AGCATGGTCTTCGCCTGTGTTTCATCAAACGACCCCGGCAAGTGCTTGGC
ATCTCCGGTAGACTCCCTCTCAAGCCTGATGTCTAGACTACATGAGATTG
CCAAAATGGCCAGAAACAATATGGCGGAGTATATTGGCATCTCTCGCGCG
TCCTACCTCCAACAACGAAGCCCTTATCCGCTGGCCCGATCCGGAGGCAG
GCGGCAGATCTTCTACGTCGTCCCGTGTAGGACTGCTGCAGATGCAAGAT
CAAGACCAGACAGATTTCTCCGCATCCGTCGACGAGAATTTGGAGTGGCA
CCCCAGCACAAACAACGGCAGCACGACACAAGATGACACGGCCGACGAGT
ACAACAGACAATACATGCGGGGAGGAGAGTACGGGGAACAGTACGTCGTG
CAAGCTTACAATCAGGCGGCAGTGAACGACGAATACACCGGTCAAGACGG
CTATGCCCAACAAGAACAACCTCGGGAGGATCACGGCCATTATAAATAAT
AGTCTCAATGGCGAGCGGTCTGCTCTTCTTTCACGTTGATCATCATCATG
AATCAGAGAGCTTTACCTCGCGGCCATGATAGGGTGAACAATTTTGCCGT
CATCGCTGTATCTATCGCCGTAACAGCGCCAGGAATGCGCGCGTTTCTGT
GTTGCGTTGGTTGGTCCTCATGAGGTGCACAGAACGAGGCTTAGGCTCAA
CGGCGGTCGCCGACGGCTAGGTTTGTTTTCCCTTTAAATATCCTGTAGAC
AGATACGCCATGTAGCCCAGACACTGTTTCAACAAGTTAACGGATACGAT
TGTTCTATTCTACGACGTGATACGTTTTGTTTATTTATTTCTCGTTGGCT
GCTCCCTCCCCCGTCGCAAAGAATGGAATTG back to topCoding sequence (CDS) from alignment at Scaffold_106:201054..203134+ >EsuBft1180_7a-0001 ID=EsuBft1180_7a-0001|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_106:201054..203134+ (Ectocarpus subulatus male Bft15b)
ATGTACGAAGAAGGTCAATTGGATGCCAAGGGGAAGAGGCTACTCTTGGA
GGCCTTGGCTTCAGGGGACAGTGCCCTTAAGATGTCGTCAGCCGTCGCTT
CGGCACGAACGGTGTTCCGCGAGAGGGAACTTCAGGAGAATGCCGAGCTG
CAGGCGGCGATATCGTTGGGCAAGTACATGCAGGAGCTGAAGGTGTGGGC
TCAGGAGGAGATGGACGCTTCCGTTTCGCAAAAGGCTCGTTACCTCAAGG
GCGGCTCGGAGTCTTCCAAAGGCGGCAGATCTTCTACGTCGTCCCGTGTA
GGACTGCTGCAGATGCAAGATCAAGACCAGACAGATTTCTCCGCATCCGT
CGACGAGAATTTGGAGTGGCACCCCAGCACAAACAACGGCAGCACGACAC
AAGATGACACGGCCGACGAGTACAACAGACAATACATGCGGGGAGGAGAG
TACGGGGAACAGTACGTCGTGCAAGCTTACAATCAGGCGGCAGTGAACGA
CGAATACACCGGTCAAGACGGCTATGCCCAACAAGAACAACCTCGGGAGG
ATCACGGCCATTATAAATAA back to top
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