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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FGX1 |
| ProteomeId | EsuBft1180_6 |
| Protein domains | IPR000048 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 77 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.3e-119 |
| EggNOG OGs | KOG2800@1|root,KOG4341@1|root,KOG2800@2759|Eukaryota,KOG4341@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | C2orf69 |
| GOs | GO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869 |
| Description | modulation by host of viral RNA genome replication |
| COG category | KLT |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1180_6a-0001 ID=EsuBft1180_6a-0001|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=770bp|location=Sequence derived from alignment at Scaffold_106:196585..199439+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AAAAAGAGATCGAGCGAAGAGCCGCTGTTCAACTCCAGTCGTTCTGGAGG
GGTTGCATTGGCAAGCATATGGGTGCCCAGGTTAAGAGCCAGATGGCGAG
AGTCAAGCGAGCAAGGCACCGCACCGCAATCAAGCTTCAGGCGGCGTTCA
GGGGGCACCGTGGGCGAGGAGAGTGGAGAAGAGTGCACCAAGAGTGGAAG
AAGAATAGCAGGGCGGCTCGAAAGATCCAGAAGGTGTTTAGAGGCAGTCG
CGTGATGAGTTGGCGAGATGTTCGTCTGAACAAGGTGGCGCAGCACGTGT
TTATGAGGCAAGAGATGGAGTTCCAGGAGAGGTTGGACGGCGGTCGTGCT
CGCTACCAGCATCTCGTTGACGAGGCCGGCAGGGACTCATGCAGCGAGGA
TGACGACGAAGCAGATGCCACCGACCACTGGGAGGAGATCTGGGACGAGG
GCGCGGACCATAGTTATTGGTGGAACGCTGCGTTACGGGAGTCGTCGCCC
GTGAAGCCCTTGGCCTTCGAGGAAGGTCTCGTGGGAATGCGAGTATGGCT
GACTCGTCCGACGTCCGCAGGCCTGGCGGGGGAGGGTCAACTCACACGGT
TGTCCTTCGAGGACGTCATGATGGTGCGGAGCAACGGGGCATGGGTGCAG
CTGAGAAATTTCATCGAGCCTGCCGTCGCCAAGGCCCGAGCGAGAAAAGA
GATGCTAAGCAGGAGGCGAAGAGCCAACCAGCACCTATTCGACAGGGAGC
AAAGGCACGAGCGAACCTGA back to topprotein sequence of EsuBft1180_6a-0001 >EsuBft1180_6 ID=EsuBft1180_6|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=233bp
MGAQVKSQMARVKRARHRTAIKLQAAFRGHRGRGEWRRVHQEWKKNSRAA
RKIQKVFRGSRVMSWRDVRLNKVAQHVFMRQEMEFQERLDGGRARYQHLV
DEAGRDSCSEDDDEADATDHWEEIWDEGADHSYWWNAALRESSPVKPLAF
EEGLVGMRVWLTRPTSAGLAGEGQLTRLSFEDVMMVRSNGAWVQLRNFIE
PAVAKARARKEMLSRRRRANQHLFDREQRHERT back to topmRNA from alignment at Scaffold_106:196585..199439+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1180_6a-0001 ID=EsuBft1180_6a-0001|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2855bp|location=Sequence derived from alignment at Scaffold_106:196585..199439+ (Ectocarpus subulatus male Bft15b)
AAAAAGAGATCGAGCGAAGAGCCGCTGTTCAACTCCAGGTAAGAGTTTGT
GCCACAGGAGATGACTCGTCGGTGGCCCGTCTCCAACGACACAGTGCACG
AGGCATTGCTCACGAAAGGACATTCTTCTGCTCAAGAGGTCCAGCATGTT
TTGCCATGCGTTAGGTTGTTTGTCTACCTACTCGGTAGCTCCCCCAATCC
CCCCACCCCTCCATTTCGTGGATGCCGTGTAGTTTTCCTACTCGTTCTTC
GTCCTCTACGGCGGTTTAATGTGTCCGGCAGTCGTTCTGGAGGGGTTGCA
TTGGCAAGCATATGGGTGCCCAGGTTAAGAGCCAGATGGCGAGAGTCAAG
CGAGCAAGGCACCGCACCGGTGGGTTCAGACACTTTTGCTATTCGTTCTT
GTGGCCCTGCGTGTGCGGGCAGGACCGAAGTATAATGAGCAATGCCGGTG
GCATCCGAAGCACCGTAGAAGGAGCGCTTTAGGCATTCTTGATGCGGCTA
GATACGGGTACCCGATGAAATTCGGTGGAATCGTTCGTCAGCACACATAA
CCTGTGTCCAACAGTGTCGGGTATGTATGTATGTCGCCCCCCGTTGGTGG
GAAGTTGCTCGTGACACTCGTTCTCCGTTCGCGTCGGGAACAAATAATGA
ACGCTCGATAAAATCAAAACTCAAACACCAAACACAGCAATCAAGCTTCA
GGCGGCGTTCAGGGGGCACCGTGGGCGAGGAGAGTGGAGAAGAGTGCACC
AAGAGTGGAAGAAGAATAGCAGGGCGGCTCGAAAGATCCAGAAGGTGATC
GAAAAGCAGGAGCCCCGGCAAAACGGCAGCGTTTTACGTACACTTCCACG
CCACGCGTGATTGTTCTTTACTTCACCTATTCACGCATCCTTTGCGCTGA
GCCTCCCTCCCACCTCCCACCTCTCCGTATCACTCGCGTGTCTTATGCGC
AGGTGTTTAGAGGCAGTCGCGTGATGAGTTGGCGAGATGTTCGTCTGAAC
AAGGTGGCGCAGCACGTGTTTATGAGGCAAGAGATGGAGTTCCAGGAGAG
GTTGGACGGCGGTCGTGCTCGCTACCAGCATCTCGTTGACGAGGCCGGCA
GGTATTGCGTGTTTTCTGTTTCACAAGTGTAGAGATGTGGTTGGTGTAAT
GGTATACTCTGTGTGGAAGACGAGGGTGGGTTCTGTGTGGGTGTGTACGT
TGAGATTTGATGTGTACAGATGAACCATGGCAGCAGCACCACAGCCTAAG
GCAACTTGTGAGGATATGAGGCACATTTTCTCTTGGATGTCTCACCCCAG
AGCGCGTGTTATATCTGCTGCGGAGATAGCTGACTGCCGCAGTTCCCAAT
GTGCAGTTCTATAAAGATCGAGAGTGACAAGACTTGCCGAGCCTCGGATG
TCGGTCAACGATGAACACTTCGGTTGAGCACTTGGAAGTCCCCATGTTTT
ATTGGTGAACCTGCCCGTCCTTATACACCTCGGATGGACTCCATGGTTGC
AGGGACTCATGCAGCGAGGATGACGACGAAGCAGATGCCACCGACCACTG
GGAGGAGGTAGGGAAACCCTGGCATGCACAGGATTTACATTGTGGCAACG
ATTTGAATATTGCCTCAACGCCGTCGATGGGAGAGAGAAAGCTGCGCTCT
ACGAAAACATGGTCACACGTGGACGTCTAACCTCGCGTCACTAGTTCGTC
TCCCCCCCCACACTATCAGGGGCCCCCGTGCCGAACCTATCCCTATTGAC
ACTCTCACCTGTTATTCGTTCGTCACCGTGCAAACACCCTCGATTTGATA
ACGATGCTGGTCATTTGTGTGCGTCCTTGGTTTCCTTCAAGCTACACTGC
TGCGTGAGACACATTTGTCTGGGGTTTGTTCCTGTGCTTTCTTTTCTCCC
TTCCTGCCGTACTGTCATACGATCGTACCCATCGACCACTTGACCTTGCC
CACCATTGTTCGTTAGATCTGGGACGAGGGCGCGGACCATAGTTATTGGT
GGAACGCTGCGTTACGGGAGTCGTCGCCCGTGAAGCCCTTGGCCTTCGAG
GAAGGTCTCGTGGGAATGCGAGTATGGCTGACTCGTCCGACGTCCGCAGG
CCTGGCGGGGGAGGGTCAACTCACACGGTGAGAGTTGTCGTCACCGCACG
GCGAATGCTAGGTAGAAATGTGTCATCAGCTGCGCGGTGCCTACCGGTGT
CCATTCAGTCAGGTCGATCACTGACCAAAGAACTAATATTTGCGTTCTTC
AGGCCAGAAAAGGTACAAACACGAACAAAACAACACATAGTATAATGTGT
TCTTGCCATGTGTGAATTGCAGTTCGGTTCCGTCTGCTTATCCGCTCCGT
GTTTTGAATGGATGGGCAAAACAGGCTCAACCGCAAGAGGGTCAAACACC
GCCTAGAATTCGACAGTGGGGGGCGGAAATGGATCAACCTCGACGACGAG
CAAGTGAGAGTAACATTCTCCTCACGTAAACCAGGGGGGTGAAAGAGATG
AGTCATGATGTTTTGGGGGGCGAATTGCGGGGCGCAGGTTGTCCTTCGAG
GTACGTTTGAAGTACCTTATTAGTACTTGAAGTTTTAACGAAGGGATTGG
GGGACCTCACGAAAAATATGCCCCCGTCAATATGTGAGATGGAAGCGCCA
TGCAAATCCCTGTGCCCCCCTGTACACAATATACCTCCTGTGCAAGGACG
TCATGATGGTGCGGAGCAACGGGGCATGGGTGCAGCTGAGAAATTTCATC
GAGCCTGCCGTCGCCAAGGCCCGAGCGAGAAAAGAGATGCTAAGCAGGAG
GCGAAGAGCCAACCAGCACCTATTCGACAGGGAGCAAAGGCACGAGCGAA
CCTGA back to topCoding sequence (CDS) from alignment at Scaffold_106:196585..199439+ >EsuBft1180_6a-0001 ID=EsuBft1180_6a-0001|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_106:196585..199439+ (Ectocarpus subulatus male Bft15b)
ATGGGTGCCCAGGTTAAGAGCCAGATGGCGAGAGTCAAGCGAGCAAGGCA
CCGCACCGCAATCAAGCTTCAGGCGGCGTTCAGGGGGCACCGTGGGCGAG
GAGAGTGGAGAAGAGTGCACCAAGAGTGGAAGAAGAATAGCAGGGCGGCT
CGAAAGATCCAGAAGGTGTTTAGAGGCAGTCGCGTGATGAGTTGGCGAGA
TGTTCGTCTGAACAAGGTGGCGCAGCACGTGTTTATGAGGCAAGAGATGG
AGTTCCAGGAGAGGTTGGACGGCGGTCGTGCTCGCTACCAGCATCTCGTT
GACGAGGCCGGCAGGGACTCATGCAGCGAGGATGACGACGAAGCAGATGC
CACCGACCACTGGGAGGAGATCTGGGACGAGGGCGCGGACCATAGTTATT
GGTGGAACGCTGCGTTACGGGAGTCGTCGCCCGTGAAGCCCTTGGCCTTC
GAGGAAGGTCTCGTGGGAATGCGAGTATGGCTGACTCGTCCGACGTCCGC
AGGCCTGGCGGGGGAGGGTCAACTCACACGGTTGTCCTTCGAGGACGTCA
TGATGGTGCGGAGCAACGGGGCATGGGTGCAGCTGAGAAATTTCATCGAG
CCTGCCGTCGCCAAGGCCCGAGCGAGAAAAGAGATGCTAAGCAGGAGGCG
AAGAGCCAACCAGCACCTATTCGACAGGGAGCAAAGGCACGAGCGAACCT
GA back to top
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